Gchil1209.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1209.t1
Unique Name	Gchil1209.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	424

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:160789..162060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702863.1
PFAMs	KH_1,STAR_dimer
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14945
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048577,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048587,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0097159,GO:1901363,GO:2000026,GO:2000028,GO:2000241,GO:2000242
Evalue	4.19e-58
EggNOG OGs	COG5176@1\|root,KOG1588@2759\|Eukaryota
Description	RNA binding
COG category	A
BRITE	ko00000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1209	Gchil1209	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 160789..162060 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1209.t1.start1	Gchil1209.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 160789..160791 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1209.t1.CDS1	Gchil1209.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 160789..162060 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1209.t1.exon1	Gchil1209.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 160789..162060 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1209.t1.stop1	Gchil1209.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 162058..162060 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1209.t1	Gchil1209.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 160789..162060 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:160789..162060+
coding sequence from alignment at tig00004437_pilon:160789..162060+

mRNA sequence

>Gchil1209.t1 ID=Gchil1209.t1|Name=Gchil1209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=424bp
MAARALFLTSPASSPPPPSASPSASRASPSPSSPSASPSGRAPGRLLQQL
LRERDAIAPLRPALPNLCALLDAEIARCRAASSSAPPRRRTKIPVPADKF
PDYNFVGRLLGPRGTTLKTLERDTGCRIMIRGRGSIRKDKEPDVRGKPGW
EHVFHEPLHVVIEAPDSLHEPAASVALARASDAVETLLIPVPEERDALKR
HQLRALAIMNGTFRGALPMSCEADTLPPLPSLPSPTMAPYHSPLSLFRAA
SSPLSQQRASAAVAAAASAPPPPPPQQQQPQPHHHKSPPASALSPLSAKL
LRSSALDDLAATSSVGEDSAESSQTSEHDDTAPASRVALCAPTALGAGGF
IGREFYNGAFSNAAASGCSVARSAWEEGTTCSSPLVSDSTNACGGNSAFE
TPSPHILTCSSTVTALNAADDLY*

spliced messenger RNA

>Gchil1209.t1 ID=Gchil1209.t1|Name=Gchil1209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00004437_pilon:160789..162060+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGCGCGCTCTCTTCCTCACCTCGcccgcgtcgtcgccgccgcc
gccgtctgcgtcgccgtctgcgtcgcgcgcgtcgccgtcgccgtcgtcgc
catcggcgtcgccgtcgGGCCGCGCCCCGGGCCGTTTGCTACAACAGCTT
CTTCGCGAGCGCGATGCTATCGCGCCGCTGCGCCCCGCGCTGCCCAACCT
GTGCGCGCTGTTGGACGCCGAGATCGCCCGCTGTCGCGCCGCCTCCTCAT
CGGCGCCGCCGCGCCGTCGCACCAAGATCCCGGTGCCCGCCGACAAGTTT
CCCGACTACAACTTTGTCGGCCGTCTCCTCGGTCCGCGCGGCACCACCCT
CAAGACGCTGGAGCGCGACACGGGCTGTCGCATCATGATTCGCGGCCGCG
GCAGCATCCGCAAGGACAAGGAGCCCGACGTGCGCGGCAAGCCCGGCTGG
GAGCACGTCTTTCACGAACCGCTCCACGTCGTCATTGAGGCGCCCGACTC
GCTGCACGAGCCTGCTGCCTCCGTCGCTCTGGCGCGTGCGTCGGATGCTG
TGGAAACTTTGCTCATTCCCGTGCCTGAGGAACGAGATGCTCTCAAACGT
CACCAGCTCAGGGCGCTTGCTATCATGAACGGTACTTTTCGTGGCGCGCT
TCCCATGTCGTGTGAGGCCGATACGCTGCCGCCGCTGCCCTCGTTGCCGT
CGCCAACCATGGCACCGTACCACTCGCCGCTGTCGCTGTTTCGCGCCGCG
TCTTCGCCGCTGTCGCAGCAGCGCGCGTccgcggccgtcgccgccgccgc
aagcgcgccgccgccgccgccgccgcagcagcagcagccgcagccgcatc
accaCAAGTCGCCTCCTGCGTCAGCGCTGTCGCCGCTCAGTGCAAAGCTG
CTGCGCTCCAGTGCACTCGATGATTTGGCAGCCACCAGCTCGGTCGGCGA
GGACAGCGCCGAATCGTCGCAAACTTCCGAACACGATGACACGGCGCCcg
cgtcgcgcgtggcgctctgcgcgcccaccgcgctcggcgccggcgGCTTC
ATAGGACGCGAATTTTACAACGGCGCCTTTTCTAACGCCGCCGCCTCTGG
CTGCAGTGTCGCACGCTCCGCGTGGGAAGAAGGTACCACCTGTTCGTCGC
CGCTCGTGTCCGACTCCACCAACGCGTGTGGCGGAAACTCGGCGTTTGAA
ACCCCGTCGCCTCATATTCTAACGTGCTCCTCAACTGTAACTGCTCTCAA
CGCTGCTGATGATTTGTACTAA

protein sequence of Gchil1209.t1

>Gchil1209.t1 ID=Gchil1209.t1|Name=Gchil1209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=424bp
MAARALFLTSPASSPPPPSASPSASRASPSPSSPSASPSGRAPGRLLQQL
LRERDAIAPLRPALPNLCALLDAEIARCRAASSSAPPRRRTKIPVPADKF
PDYNFVGRLLGPRGTTLKTLERDTGCRIMIRGRGSIRKDKEPDVRGKPGW
EHVFHEPLHVVIEAPDSLHEPAASVALARASDAVETLLIPVPEERDALKR
HQLRALAIMNGTFRGALPMSCEADTLPPLPSLPSPTMAPYHSPLSLFRAA
SSPLSQQRASAAVAAAASAPPPPPPQQQQPQPHHHKSPPASALSPLSAKL
LRSSALDDLAATSSVGEDSAESSQTSEHDDTAPASRVALCAPTALGAGGF
IGREFYNGAFSNAAASGCSVARSAWEEGTTCSSPLVSDSTNACGGNSAFE
TPSPHILTCSSTVTALNAADDLY*

mRNA from alignment at tig00004437_pilon:160789..162060+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1209.t1 ID=Gchil1209.t1|Name=Gchil1209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00004437_pilon:160789..162060+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCGCGCGCTCTCTTCCTCACCTCGcccgcgtcgtcgccgccgcc
gccgtctgcgtcgccgtctgcgtcgcgcgcgtcgccgtcgccgtcgtcgc
catcggcgtcgccgtcgGGCCGCGCCCCGGGCCGTTTGCTACAACAGCTT
CTTCGCGAGCGCGATGCTATCGCGCCGCTGCGCCCCGCGCTGCCCAACCT
GTGCGCGCTGTTGGACGCCGAGATCGCCCGCTGTCGCGCCGCCTCCTCAT
CGGCGCCGCCGCGCCGTCGCACCAAGATCCCGGTGCCCGCCGACAAGTTT
CCCGACTACAACTTTGTCGGCCGTCTCCTCGGTCCGCGCGGCACCACCCT
CAAGACGCTGGAGCGCGACACGGGCTGTCGCATCATGATTCGCGGCCGCG
GCAGCATCCGCAAGGACAAGGAGCCCGACGTGCGCGGCAAGCCCGGCTGG
GAGCACGTCTTTCACGAACCGCTCCACGTCGTCATTGAGGCGCCCGACTC
GCTGCACGAGCCTGCTGCCTCCGTCGCTCTGGCGCGTGCGTCGGATGCTG
TGGAAACTTTGCTCATTCCCGTGCCTGAGGAACGAGATGCTCTCAAACGT
CACCAGCTCAGGGCGCTTGCTATCATGAACGGTACTTTTCGTGGCGCGCT
TCCCATGTCGTGTGAGGCCGATACGCTGCCGCCGCTGCCCTCGTTGCCGT
CGCCAACCATGGCACCGTACCACTCGCCGCTGTCGCTGTTTCGCGCCGCG
TCTTCGCCGCTGTCGCAGCAGCGCGCGTccgcggccgtcgccgccgccgc
aagcgcgccgccgccgccgccgccgcagcagcagcagccgcagccgcatc
accaCAAGTCGCCTCCTGCGTCAGCGCTGTCGCCGCTCAGTGCAAAGCTG
CTGCGCTCCAGTGCACTCGATGATTTGGCAGCCACCAGCTCGGTCGGCGA
GGACAGCGCCGAATCGTCGCAAACTTCCGAACACGATGACACGGCGCCcg
cgtcgcgcgtggcgctctgcgcgcccaccgcgctcggcgccggcgGCTTC
ATAGGACGCGAATTTTACAACGGCGCCTTTTCTAACGCCGCCGCCTCTGG
CTGCAGTGTCGCACGCTCCGCGTGGGAAGAAGGTACCACCTGTTCGTCGC
CGCTCGTGTCCGACTCCACCAACGCGTGTGGCGGAAACTCGGCGTTTGAA
ACCCCGTCGCCTCATATTCTAACGTGCTCCTCAACTGTAACTGCTCTCAA
CGCTGCTGATGATTTGTACTAA

Coding sequence (CDS) from alignment at tig00004437_pilon:160789..162060+

>Gchil1209.t1 ID=Gchil1209.t1|Name=Gchil1209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00004437_pilon:160789..162060+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCGCGCGCTCTCTTCCTCACCTCGcccgcgtcgtcgccgccgcc
gccgtctgcgtcgccgtctgcgtcgcgcgcgtcgccgtcgccgtcgtcgc
catcggcgtcgccgtcgGGCCGCGCCCCGGGCCGTTTGCTACAACAGCTT
CTTCGCGAGCGCGATGCTATCGCGCCGCTGCGCCCCGCGCTGCCCAACCT
GTGCGCGCTGTTGGACGCCGAGATCGCCCGCTGTCGCGCCGCCTCCTCAT
CGGCGCCGCCGCGCCGTCGCACCAAGATCCCGGTGCCCGCCGACAAGTTT
CCCGACTACAACTTTGTCGGCCGTCTCCTCGGTCCGCGCGGCACCACCCT
CAAGACGCTGGAGCGCGACACGGGCTGTCGCATCATGATTCGCGGCCGCG
GCAGCATCCGCAAGGACAAGGAGCCCGACGTGCGCGGCAAGCCCGGCTGG
GAGCACGTCTTTCACGAACCGCTCCACGTCGTCATTGAGGCGCCCGACTC
GCTGCACGAGCCTGCTGCCTCCGTCGCTCTGGCGCGTGCGTCGGATGCTG
TGGAAACTTTGCTCATTCCCGTGCCTGAGGAACGAGATGCTCTCAAACGT
CACCAGCTCAGGGCGCTTGCTATCATGAACGGTACTTTTCGTGGCGCGCT
TCCCATGTCGTGTGAGGCCGATACGCTGCCGCCGCTGCCCTCGTTGCCGT
CGCCAACCATGGCACCGTACCACTCGCCGCTGTCGCTGTTTCGCGCCGCG
TCTTCGCCGCTGTCGCAGCAGCGCGCGTccgcggccgtcgccgccgccgc
aagcgcgccgccgccgccgccgccgcagcagcagcagccgcagccgcatc
accaCAAGTCGCCTCCTGCGTCAGCGCTGTCGCCGCTCAGTGCAAAGCTG
CTGCGCTCCAGTGCACTCGATGATTTGGCAGCCACCAGCTCGGTCGGCGA
GGACAGCGCCGAATCGTCGCAAACTTCCGAACACGATGACACGGCGCCcg
cgtcgcgcgtggcgctctgcgcgcccaccgcgctcggcgccggcgGCTTC
ATAGGACGCGAATTTTACAACGGCGCCTTTTCTAACGCCGCCGCCTCTGG
CTGCAGTGTCGCACGCTCCGCGTGGGAAGAAGGTACCACCTGTTCGTCGC
CGCTCGTGTCCGACTCCACCAACGCGTGTGGCGGAAACTCGGCGTTTGAA
ACCCCGTCGCCTCATATTCTAACGTGCTCCTCAACTGTAACTGCTCTCAA
CGCTGCTGATGATTTGTACTAA