Gchil1210.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1210.t1
Unique NameGchil1210.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length640
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:163220..165428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702863.1
PFAMsKH_1,STAR_dimer
Max annot lvl2759|Eukaryota
KEGG koko:K14945
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048577,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048587,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0097159,GO:1901363,GO:2000026,GO:2000028,GO:2000241,GO:2000242
Evalue1.87e-53
EggNOG OGsCOG5176@1|root,KOG1588@2759|Eukaryota
DescriptionRNA binding
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1210Gchil1210Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 163220..165428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1210.t1Gchil1210.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 163220..165428 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1210.t1.stop1Gchil1210.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 163220..163222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1210.t1.CDS1Gchil1210.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 163220..163287 -
Gchil1210.t1.CDS2Gchil1210.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 163406..163418 -
Gchil1210.t1.CDS3Gchil1210.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 163590..165428 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1210.t1.exon1Gchil1210.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 163220..163287 -
Gchil1210.t1.exon2Gchil1210.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 163406..163418 -
Gchil1210.t1.exon3Gchil1210.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 163590..165428 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1210.t1.intron1Gchil1210.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 163288..163405 -
Gchil1210.t1.intron2Gchil1210.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 163419..163589 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1210.t1.start1Gchil1210.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 165426..165428 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1210.t1 ID=Gchil1210.t1|Name=Gchil1210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=640bp
MARVSSLLEQLVREAEVLSTIKNDVPHAWKILEHEIGRARAAVHADLTVP
PVSSVPSVSTSSAAHDSMFAPSPPAPAPAPSPPPPPPPPPPPPPPPLSEA
CAAALHEHAPRHSVRKRVKLRVPADQYPEYNFVGRLLGPRGATLKRLERD
TGCRIMIRGKGSIRKDKEPDVRGKPGWEHVFNEPLHVVIEVVDSPDDASA
TRILAHAKQLVDILLIPVPEERDSLKRAQLRDLAILNGTHRSVSDLLAPS
SHNMALPAVHRSSNPLVTSPPPLRRAQSHHTKPSQKMYANDYANMFEPLL
PFARHNSFSPPAPHRALHSLPPYSQPPAFASTSHDSLLSELEKLRIPALD
FDHLNEPHLPHNNYNYNNYNNNNNNNNPNNPNNNPNNNNNNNNMNNFNNN
NSINSNFPLPAPSPTIVDPEIYPYPSTPGLLTSDQQLSAFASPTWTPSRP
AVASTMSSSSLPPRSPPATSDKSNNGNQPTCSFLLGRTLGDFSRHTQPHG
AHDSATSSMDAMSFEQCFGAHFGDVDGRDAVATQKHPFSAMRNSSGDAIV
LANLFPASASASSNCKPFEQRRELLSASSSSSSSASSAHVEHGESHGGGV
KPHHVGLQCSPQQLLREGVLLHFPPSSTHKHHDVRIMGW*
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spliced messenger RNA

>Gchil1210.t1 ID=Gchil1210.t1|Name=Gchil1210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00004437_pilon:163220..165428- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCGTCTCCTCGTTGTTGGAGCAGCTGGTGCGCGAGGCCGAGGT
CTTGTCCACCATCAAGAACGACGTGCCACACGCGTGGAAGATCCTTGAAC
ATGAGATCGGTCGCGCGCGCGCCGCCGTGCACGCCGACCTCACCGTACCC
CCCGTGTCTTCCGTACCCTCCGTGTCCACATCCTCTGCGGCTCACGACTC
CATGTTCGCGCCGTCGCCGCCTGCGCCTGCGCCTGCGCCGTCACCACCGC
CGCCACCGCCACCGCCACCGCCGCCACCGCCACCACCTTTGTCCGAGGCG
TGTGCGGCTGCGCTGCACGAGCATGCGCCGCGTCACTCGGTGCGCAAGCG
AGTCAAGCTGCGCGTGCCCGCAGACCAGTACCCCGAGTACAACTTTGTTG
GTCGTTTGCTCGGGCCACGCGGCGCCACCCTCAAGCGTTTGGAACGCGAC
ACGGGCTGTCGCATCATGATTCGTGGCAAGGGTAGCATCCGCAAGGACAA
GGAGCCCGACGTGCGCGGAAAGCCCGGCTGGGAACACGTCTTCAACGAGC
CGTTGCACGTCGTGATTGAGGTAGTCGATTCTCCCGACGACGCCTCCGCC
ACACGCATTCTGGCGCACGCCAAACAACTCGTCGATATTCTGCTCATCCC
CGTGCCGGAGGAGCGTGACTCTCTTAAACGTGCTCAGTTGCGCGATTTGG
CCATTCTCAATGGTACGCATCGCAGCGTGTCCGATTTGTTGGCGCCGTCG
TCGCATAACATGGCGCTTCCTGCCGTGCACCGCTCGTCCAACCCGTTGGT
CACGTCGCCTCCGCCGTTGCGTCGTGCGCAGTCGCATCATACCAAACCGT
CGCAAAAGATGTATGCCAATGACTATGCAAACATGTTTGAGCCGCTGTTG
CCGTTTGCTCGCCACAACTCCTTCTCGCCGCCGGCGCCGCATCGTGCGCT
GCATAGTCTCCCCCCGTACTCGCAGCCGCCCGCGTTTGCCTCCACCTCGC
ATGATTCACTGCTTTCTGAGCTTGAGAAGCTGCGCATCCCGGCCTTGGAT
TTTGATCACCTAAACGAGCCACACTTGCCCCACAACAACTACAACTACAA
CAACTACAACAACAACAACAACAACAACAACCCCAACAACCCCAACAATA
ATCCCAACAACAACAACAACAACAACAACATGAACAACTTTAATAATAAT
AATAGTATCAACAGCAACTTTCCTCTGCCCGCGCCCTCGCCAACCATTGT
GGACCCCGAGATCTACCCGTACCCTTCCACGCCGGGCCTGCTCACGTCTG
ACCAGCAGCTGAGCGCGTTTGCGTCGCCAACGTGGACGCCCTCGCGCCCG
GCGGTCGCAAGCACCATGTCGTCCAGCTCGCTGCCGCCGCGTTCACCGCC
GGCCACGTCCGACAAGAGCAACAACGGCAATCAGCCGACGTGCTCGTTCC
TGCTTGGGCGCACACTCGGGGACTTTTCTCGGCACACGCAGCCGCACGGG
GCGCACGACTCGGCCACCAGCTCCATGGACGCAATGTCGTTTGAGCAGTG
CTTTGGGGCGCACTTTGGCGACGTGGACGGGCGCGACGCCGTGGCGACGC
AGAAGCATCCGTTTTCTGCAATGAGGAATTCTAGTGGCGATGCAATTGTG
CTTGCCAATCTGTTCCCTGCCAGTGCTTCGGCGTCGTCCAACTGCAAGCC
GTTTGAGCAGCGTCGGGAGTTGTTGTCGGCGTCGTCGTCATCGTCGTCGT
CGGCGTCGTCGGCGCACGTTGAGCATGGCGAGTCGCACGGCGGCGGCGTG
AAGCCGCACCACGTTGGGCTGCAGTGCTCTCCGCAGCAGCTACTGAGAGA
AGGCGTGTTGCTTCATTTTCCTCCCTCGAGCACACACAAGCATCACGACG
TGAGAATAATGGGTTGGTGA
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protein sequence of Gchil1210.t1

>Gchil1210.t1 ID=Gchil1210.t1|Name=Gchil1210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=640bp
MARVSSLLEQLVREAEVLSTIKNDVPHAWKILEHEIGRARAAVHADLTVP
PVSSVPSVSTSSAAHDSMFAPSPPAPAPAPSPPPPPPPPPPPPPPPLSEA
CAAALHEHAPRHSVRKRVKLRVPADQYPEYNFVGRLLGPRGATLKRLERD
TGCRIMIRGKGSIRKDKEPDVRGKPGWEHVFNEPLHVVIEVVDSPDDASA
TRILAHAKQLVDILLIPVPEERDSLKRAQLRDLAILNGTHRSVSDLLAPS
SHNMALPAVHRSSNPLVTSPPPLRRAQSHHTKPSQKMYANDYANMFEPLL
PFARHNSFSPPAPHRALHSLPPYSQPPAFASTSHDSLLSELEKLRIPALD
FDHLNEPHLPHNNYNYNNYNNNNNNNNPNNPNNNPNNNNNNNNMNNFNNN
NSINSNFPLPAPSPTIVDPEIYPYPSTPGLLTSDQQLSAFASPTWTPSRP
AVASTMSSSSLPPRSPPATSDKSNNGNQPTCSFLLGRTLGDFSRHTQPHG
AHDSATSSMDAMSFEQCFGAHFGDVDGRDAVATQKHPFSAMRNSSGDAIV
LANLFPASASASSNCKPFEQRRELLSASSSSSSSASSAHVEHGESHGGGV
KPHHVGLQCSPQQLLREGVLLHFPPSSTHKHHDVRIMGW*
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mRNA from alignment at tig00004437_pilon:163220..165428-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1210.t1 ID=Gchil1210.t1|Name=Gchil1210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2209bp|location=Sequence derived from alignment at tig00004437_pilon:163220..165428- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGCGTCTCCTCGTTGTTGGAGCAGCTGGTGCGCGAGGCCGAGGT
CTTGTCCACCATCAAGAACGACGTGCCACACGCGTGGAAGATCCTTGAAC
ATGAGATCGGTCGCGCGCGCGCCGCCGTGCACGCCGACCTCACCGTACCC
CCCGTGTCTTCCGTACCCTCCGTGTCCACATCCTCTGCGGCTCACGACTC
CATGTTCGCGCCGTCGCCGCCTGCGCCTGCGCCTGCGCCGTCACCACCGC
CGCCACCGCCACCGCCACCGCCGCCACCGCCACCACCTTTGTCCGAGGCG
TGTGCGGCTGCGCTGCACGAGCATGCGCCGCGTCACTCGGTGCGCAAGCG
AGTCAAGCTGCGCGTGCCCGCAGACCAGTACCCCGAGTACAACTTTGTTG
GTCGTTTGCTCGGGCCACGCGGCGCCACCCTCAAGCGTTTGGAACGCGAC
ACGGGCTGTCGCATCATGATTCGTGGCAAGGGTAGCATCCGCAAGGACAA
GGAGCCCGACGTGCGCGGAAAGCCCGGCTGGGAACACGTCTTCAACGAGC
CGTTGCACGTCGTGATTGAGGTAGTCGATTCTCCCGACGACGCCTCCGCC
ACACGCATTCTGGCGCACGCCAAACAACTCGTCGATATTCTGCTCATCCC
CGTGCCGGAGGAGCGTGACTCTCTTAAACGTGCTCAGTTGCGCGATTTGG
CCATTCTCAATGGTACGCATCGCAGCGTGTCCGATTTGTTGGCGCCGTCG
TCGCATAACATGGCGCTTCCTGCCGTGCACCGCTCGTCCAACCCGTTGGT
CACGTCGCCTCCGCCGTTGCGTCGTGCGCAGTCGCATCATACCAAACCGT
CGCAAAAGATGTATGCCAATGACTATGCAAACATGTTTGAGCCGCTGTTG
CCGTTTGCTCGCCACAACTCCTTCTCGCCGCCGGCGCCGCATCGTGCGCT
GCATAGTCTCCCCCCGTACTCGCAGCCGCCCGCGTTTGCCTCCACCTCGC
ATGATTCACTGCTTTCTGAGCTTGAGAAGCTGCGCATCCCGGCCTTGGAT
TTTGATCACCTAAACGAGCCACACTTGCCCCACAACAACTACAACTACAA
CAACTACAACAACAACAACAACAACAACAACCCCAACAACCCCAACAATA
ATCCCAACAACAACAACAACAACAACAACATGAACAACTTTAATAATAAT
AATAGTATCAACAGCAACTTTCCTCTGCCCGCGCCCTCGCCAACCATTGT
GGACCCCGAGATCTACCCGTACCCTTCCACGCCGGGCCTGCTCACGTCTG
ACCAGCAGCTGAGCGCGTTTGCGTCGCCAACGTGGACGCCCTCGCGCCCG
GCGGTCGCAAGCACCATGTCGTCCAGCTCGCTGCCGCCGCGTTCACCGCC
GGCCACGTCCGACAAGAGCAACAACGGCAATCAGCCGACGTGCTCGTTCC
TGCTTGGGCGCACACTCGGGGACTTTTCTCGGCACACGCAGCCGCACGGG
GCGCACGACTCGGCCACCAGCTCCATGGACGCAATGTCGTTTGAGCAGTG
CTTTGGGGCGCACTTTGGCGACGTGGACGGGCGCGACGCCGTGGCGACGC
AGAAGCATCCGTTTTCTGCAATGAGGAATTCTAGTGGCGATGCAATTGTG
CTTGCCAATCTGTTCCCTGCCAGTGCTTCGGCGTCGTCCAACTGCAAGCC
GTTTGAGCAGCGTCGGGAGTTGTTGTCGGCGTCGTCGTCATCGTCGTCGT
CGGCGTCGTCGGCGCACGTTGAGCATGGCGAGTCGCACGGCGGCGGCGTG
AAGCCGCACCACGTTGGGCTGCAGTGCTCTCCGCAGCAGGTGCGGCAGCA
GCAGGTGCGGCAGCAGCAACACATGCTTGGGGCTCACAACATCACCAACA
GCAGCAGCAGCAGCAGCAGCAACAAGAACAGCAACAAGAACAGCAACAAG
AACAGATCGGGACGGTCGTCGCCGCAGCGGGATGAGCGCAAGGCGGCGCG
GGAGTGCTAGCTACTGAGAGAAGGTAAGCTTTTTCCCTCCCTGTGCTTTT
TTTTTTGTTTTTTCTGGGCGGCGTGTTGTGAAAGTGTTTTGTTTGTTTGT
ACTAACTGGCTTGTTATGATGCGTGCGGAAATGGTGAACAGGCGTGTTGC
TTCATTTTCCTCCCTCGAGCACACACAAGCATCACGACGTGAGAATAATG
GGTTGGTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:163220..165428-

>Gchil1210.t1 ID=Gchil1210.t1|Name=Gchil1210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1920bp|location=Sequence derived from alignment at tig00004437_pilon:163220..165428- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGCGTCTCCTCGTTGTTGGAGCAGCTGGTGCGCGAGGCCGAGGT
CTTGTCCACCATCAAGAACGACGTGCCACACGCGTGGAAGATCCTTGAAC
ATGAGATCGGTCGCGCGCGCGCCGCCGTGCACGCCGACCTCACCGTACCC
CCCGTGTCTTCCGTACCCTCCGTGTCCACATCCTCTGCGGCTCACGACTC
CATGTTCGCGCCGTCGCCGCCTGCGCCTGCGCCTGCGCCGTCACCACCGC
CGCCACCGCCACCGCCACCGCCGCCACCGCCACCACCTTTGTCCGAGGCG
TGTGCGGCTGCGCTGCACGAGCATGCGCCGCGTCACTCGGTGCGCAAGCG
AGTCAAGCTGCGCGTGCCCGCAGACCAGTACCCCGAGTACAACTTTGTTG
GTCGTTTGCTCGGGCCACGCGGCGCCACCCTCAAGCGTTTGGAACGCGAC
ACGGGCTGTCGCATCATGATTCGTGGCAAGGGTAGCATCCGCAAGGACAA
GGAGCCCGACGTGCGCGGAAAGCCCGGCTGGGAACACGTCTTCAACGAGC
CGTTGCACGTCGTGATTGAGGTAGTCGATTCTCCCGACGACGCCTCCGCC
ACACGCATTCTGGCGCACGCCAAACAACTCGTCGATATTCTGCTCATCCC
CGTGCCGGAGGAGCGTGACTCTCTTAAACGTGCTCAGTTGCGCGATTTGG
CCATTCTCAATGGTACGCATCGCAGCGTGTCCGATTTGTTGGCGCCGTCG
TCGCATAACATGGCGCTTCCTGCCGTGCACCGCTCGTCCAACCCGTTGGT
CACGTCGCCTCCGCCGTTGCGTCGTGCGCAGTCGCATCATACCAAACCGT
CGCAAAAGATGTATGCCAATGACTATGCAAACATGTTTGAGCCGCTGTTG
CCGTTTGCTCGCCACAACTCCTTCTCGCCGCCGGCGCCGCATCGTGCGCT
GCATAGTCTCCCCCCGTACTCGCAGCCGCCCGCGTTTGCCTCCACCTCGC
ATGATTCACTGCTTTCTGAGCTTGAGAAGCTGCGCATCCCGGCCTTGGAT
TTTGATCACCTAAACGAGCCACACTTGCCCCACAACAACTACAACTACAA
CAACTACAACAACAACAACAACAACAACAACCCCAACAACCCCAACAATA
ATCCCAACAACAACAACAACAACAACAACATGAACAACTTTAATAATAAT
AATAGTATCAACAGCAACTTTCCTCTGCCCGCGCCCTCGCCAACCATTGT
GGACCCCGAGATCTACCCGTACCCTTCCACGCCGGGCCTGCTCACGTCTG
ACCAGCAGCTGAGCGCGTTTGCGTCGCCAACGTGGACGCCCTCGCGCCCG
GCGGTCGCAAGCACCATGTCGTCCAGCTCGCTGCCGCCGCGTTCACCGCC
GGCCACGTCCGACAAGAGCAACAACGGCAATCAGCCGACGTGCTCGTTCC
TGCTTGGGCGCACACTCGGGGACTTTTCTCGGCACACGCAGCCGCACGGG
GCGCACGACTCGGCCACCAGCTCCATGGACGCAATGTCGTTTGAGCAGTG
CTTTGGGGCGCACTTTGGCGACGTGGACGGGCGCGACGCCGTGGCGACGC
AGAAGCATCCGTTTTCTGCAATGAGGAATTCTAGTGGCGATGCAATTGTG
CTTGCCAATCTGTTCCCTGCCAGTGCTTCGGCGTCGTCCAACTGCAAGCC
GTTTGAGCAGCGTCGGGAGTTGTTGTCGGCGTCGTCGTCATCGTCGTCGT
CGGCGTCGTCGGCGCACGTTGAGCATGGCGAGTCGCACGGCGGCGGCGTG
AAGCCGCACCACGTTGGGCTGCAGTGCTCTCCGCAGCAGCTACTGAGAGA
AGGCGTGTTGCTTCATTTTCCTCCCTCGAGCACACACAAGCATCACGACG
TGAGAATAATGGGTTGGTGA
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