Gchil1271.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1271.t1
Unique NameGchil1271.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length118
Homology
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A2V3IJF7_9FLOR (Succinate dehydrogenase assembly factor 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJF7_9FLOR)

HSP 1 Score: 188 bits (478), Expect = 6.030e-60
Identity = 89/117 (76.07%), Postives = 110/117 (94.02%), Query Frame = 0
Query:    1 MYANHRLSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVSVGVQERTEAGENPYKEK 117
            M A HRLSLYRRI+RLHRLKLPD+QRS+GDQYVRQEFRAHRDVKPEQ+ QFL QWEDYAAHL++EADFFGLGRDL++ +VE+L+DDQKAQL+RL++SA S+G+QE+ EAG+NPY+++
Sbjct:    1 MSARHRLSLYRRILRLHRLKLPDLQRSVGDQYVRQEFRAHRDVKPEQEKQFLHQWEDYAAHLSLEADFFGLGRDLSKADVESLSDDQKAQLQRLQSSAASIGIQEKAEAGDNPYEKQ 117          
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A1X6P4M6_PORUM (Succinate dehydrogenase assembly factor 3 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4M6_PORUM)

HSP 1 Score: 81.3 bits (199), Expect = 3.250e-17
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASA 98
            L LYR ++R+H   LP  QR++GD+YVR+EF+AH++V+P Q + F+Q W++Y  HL   A    +GRDL     EAL+++Q A+L+ L A+A
Sbjct:   28 LGLYRSLLRIHAAVLPAAQRALGDRYVREEFKAHKEVEPAQADAFMQTWQEYWVHLAR-ARGGPVGRDLDGGTSEALSEEQTAKLDELAAAA 118          
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A836CAZ4_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.580e-16
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRA 96
            L LYR I+ LHR  LP   R++GD+Y++ EF+AH+D KPE    F++ WE Y   L M+   FG  RDL   E ++L  +Q+ +LE LR+
Sbjct:   11 LKLYRSILHLHRTVLPASHRAVGDKYIKAEFKAHKDAKPEHVPPFMRGWETYKERLRMQQSQFG--RDLRTDEQQSLTAEQQQKLEELRS 98          
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 2.720e-15
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 0
Query:    2 YANHRLSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASA 98
            + +H L LYRRI+ LH+ KL    R +GD YVR EFR H+D   +    FLQ+WE YA  L+ + D FG  RDLAE +   LND+Q+ +L+ L+ +A
Sbjct:   14 HKSHVLGLYRRILSLHKRKLDPRMRVLGDAYVRDEFRRHKDAAAKFVPLFLQEWEQYANMLSQKHDQFG--RDLAESDRVLLNDEQREKLQSLKDAA 108          
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A6G0W660_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W660_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.960e-15
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVSVG 102
            L+LYR I+RLHR KL  + R +GD+YVR+EF+ H++ KPE    FL +W+ Y   L  +   FG  +DL+      L+D+QK +L+ L  +A   G
Sbjct:    7 LALYRGILRLHRQKLEPVMRVLGDRYVREEFKLHKNAKPEFVKGFLTEWQGYHDMLLTKETHFG--QDLSVDHRRLLDDEQKKKLQDLHTAATKAG 100          
BLAST of Gchil1271.t1 vs. uniprot
Match: K3XC72_GLOUD (Succinate dehydrogenase assembly factor 3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC72_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 8.600e-15
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVSVG 102
            L LYRRI+ LH+ KL    R +GDQYVR EF+ H+D  P+    F+++W+ Y A ++ + D FG  ++L+  E   L+D+Q+ +L+ L+ +A  VG
Sbjct:    8 LRLYRRILTLHKKKLAPHMRILGDQYVRDEFKRHKDAAPKFVPLFMKEWQQYEAFMSQKQDTFG--KELSADEKALLDDEQQEKLKSLKDAAKLVG 101          
BLAST of Gchil1271.t1 vs. uniprot
Match: L1JE82_GUITC (Succinate dehydrogenase assembly factor 3 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JE82_GUITC)

HSP 1 Score: 73.9 bits (180), Expect = 9.050e-15
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVSVG 102
            +SLYR+I+RLH+  LP+  + +GD YVR EF+ H+  K  +   F +QW++Y   +  +A     GR+L E+E   LN +QK  L+RL   A   G
Sbjct:   11 ISLYRKILRLHKRVLPNEMKELGDSYVRSEFKQHKKAKVGEVKVFARQWKEYLYTIEAQAASGTFGRNLREEEAAHLNQEQKENLKRLEEEAKRAG 106          
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A812NPN2_9DINO (Succinate dehydrogenase assembly factor 3 n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NPN2_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-14
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHR--DVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVSVGVQ 104
            ++LYR +MRLHRLKL    RS+GD Y R+EFR H    V   Q+  F+Q+W+ Y   ++M+     +G++L  ++   LND QK QL+ L  SA S+  Q
Sbjct:   10 MTLYRSVMRLHRLKLDPQMRSLGDTYARKEFRLHGKPQVTDSQRQMFVQEWKKYVDMISMQETV--VGQELTAEQKGKLNDQQKVQLDNLEQSAKSLASQ 107          
BLAST of Gchil1271.t1 vs. uniprot
Match: A0A225WH31_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WH31_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.680e-14
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 0
Query:    7 LSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVSVG 102
            L+LYRRI+ LHR KL    R +GDQYVR EF+ H+D   +    FLQ+W+ YAA ++ +   FG   +L+  + + L+ +QK +L+ L+ +A  VG
Sbjct:    8 LALYRRILTLHRQKLEPHMRVLGDQYVRDEFKRHKDAAAKFVPLFLQEWQQYAAAMSQKQSRFG--EELSSADKQLLDGEQKLKLQSLQDAAKKVG 101          
BLAST of Gchil1271.t1 vs. uniprot
Match: UPI001C4CFA84 (succinate dehydrogenase assembly factor 3, mitochondrial n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4CFA84)

HSP 1 Score: 73.6 bits (179), Expect = 2.110e-14
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 0
Query:    8 SLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQFLQQWEDYAAHLTMEADFFG--------LGRDLAEKEVEALNDDQKAQLERLRASA 98
            SLY++I++LHR  LP   +++GDQYV+ EFR H+ V PE+  +FLQ+WE+YAA L  +              G DL+E+++ AL D+Q  QL+ L   A
Sbjct:   14 SLYKKILQLHRA-LPLELKALGDQYVKDEFRRHKSVNPEEAQRFLQEWENYAAILWQQTSQHVRGSTGRPCFGSDLSEEKLNALRDEQIGQLQELMDEA 111          
The following BLAST results are available for this feature:
BLAST of Gchil1271.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJF7_9FLOR6.030e-6076.07Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A1X6P4M6_PORUM3.250e-1745.65Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A836CAZ4_9STRA3.580e-1644.44Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A2D4BKK1_PYTIN2.720e-1546.39Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A6G0W660_9STRA7.960e-1541.67Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
K3XC72_GLOUD8.600e-1540.63Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
L1JE82_GUITC9.050e-1539.58Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A812NPN2_9DINO1.310e-1442.00Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A225WH31_9STRA1.680e-1441.67Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
UPI001C4CFA842.110e-1442.42succinate dehydrogenase assembly factor 3, mitocho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 73..97
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 7..103
e-value: 6.0E-15
score: 55.7
NoneNo IPR availableCDDcd20270Complex1_LYR_SDHAF3_LYRM10coord: 7..62
e-value: 3.56602E-24
score: 85.3221
IPR008381Succinate dehydrogenase assembly factor 3, mitochondrialPANTHERPTHR13137DC11 ACN9 HOMOLOGcoord: 6..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:942134..942652 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1Gchil1271.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004437_pilon 942134..942652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1271.t1 ID=Gchil1271.t1|Name=Gchil1271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=118bp
MYANHRLSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQ
FLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVS
VGVQERTEAGENPYKEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008381SDHAF3/Sdh7