Gchil1271.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1271.t1
Unique NameGchil1271.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:942134..942652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008609945.1
Preferred nameACN9
PFAMsComplex1_LYR_2
Max annot lvl2759|Eukaryota
KEGG koko:K08827,ko:K19950
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006082,GO:0006105,GO:0006109,GO:0006111,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009628,GO:0009889,GO:0009987,GO:0010675,GO:0010906,GO:0015976,GO:0016043,GO:0017144,GO:0019222,GO:0019752,GO:0022607,GO:0031323,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0033108,GO:0034552,GO:0034553,GO:0034622,GO:0036296,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050879,GO:0050881,GO:0050896,GO:0055093,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0071704,GO:0071840,GO:0080090
Evalue1.67e-16
EggNOG OGsKOG4100@1|root,KOG4100@2759|Eukaryota
EC2.7.11.1
Descriptionmitochondrial respiratory chain complex II assembly
COG categoryS
BRITEko00000,ko01000,ko01001,ko03041,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1271Gchil1271Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 942134..942652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1Gchil1271.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 942134..942652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1.stop1Gchil1271.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 942134..942136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1.CDS1Gchil1271.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 942134..942289 -
Gchil1271.t1.CDS2Gchil1271.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 942376..942480 -
Gchil1271.t1.CDS3Gchil1271.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 942560..942652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1.exon1Gchil1271.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 942134..942289 -
Gchil1271.t1.exon2Gchil1271.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 942376..942480 -
Gchil1271.t1.exon3Gchil1271.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 942560..942652 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1.intron1Gchil1271.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 942290..942375 -
Gchil1271.t1.intron2Gchil1271.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 942481..942559 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1271.t1.start1Gchil1271.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 942650..942652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1271.t1 ID=Gchil1271.t1|Name=Gchil1271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=118bp
MYANHRLSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQ
FLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVS
VGVQERTEAGENPYKEK*
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spliced messenger RNA

>Gchil1271.t1 ID=Gchil1271.t1|Name=Gchil1271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00004437_pilon:942134..942652- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGCAAATCATCGTTTGTCCCTGTACCGACGTATCATGCGATTGCA
TCGACTCAAACTTCCAGACATTCAGAGATCAATCGGCGACCAGTACGTCC
GTCAGGAATTTCGAGCACATCGTGATGTGAAACCGGAGCAGCAAAATCAA
TTCCTCCAGCAGTGGGAGGACTATGCTGCCCATCTCACCATGGAGGCTGA
TTTCTTTGGACTGGGACGCGATTTAGCAGAAAAAGAAGTTGAAGCCTTGA
ATGACGATCAAAAAGCACAGCTCGAACGATTGAGGGCGTCTGCAGTCAGC
GTTGGGGTGCAAGAAAGAACAGAAGCTGGAGAAAACCCGTACAAAGAAAA
GTAA
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protein sequence of Gchil1271.t1

>Gchil1271.t1 ID=Gchil1271.t1|Name=Gchil1271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=118bp
MYANHRLSLYRRIMRLHRLKLPDIQRSIGDQYVRQEFRAHRDVKPEQQNQ
FLQQWEDYAAHLTMEADFFGLGRDLAEKEVEALNDDQKAQLERLRASAVS
VGVQERTEAGENPYKEK*
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mRNA from alignment at tig00004437_pilon:942134..942652-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1271.t1 ID=Gchil1271.t1|Name=Gchil1271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004437_pilon:942134..942652- (Gracilaria chilensis NLEC103_M9 male)
ATGTATGCAAATCATCGTTTGTCCCTGTACCGACGTATCATGCGATTGCA
TCGACTCAAACTTCCAGACATTCAGAGATCAATCGGCGACCAGGTACATT
GAAGATCATCGCAAACATTTCTTTTCCCATACTGAACCCCTTCTGACCAT
CTCATGAAACCCTTGTTCACAGTACGTCCGTCAGGAATTTCGAGCACATC
GTGATGTGAAACCGGAGCAGCAAAATCAATTCCTCCAGCAGTGGGAGGAC
TATGCTGCCCATCTCACCATGGAGGCTGTATGTTCACTACTTACGGTTCA
CCGCTTCCCCAATACAGTCATTCAGAACTGACTTGCCTTCCAATGTTCCC
GCTGATTTTACAGGATTTCTTTGGACTGGGACGCGATTTAGCAGAAAAAG
AAGTTGAAGCCTTGAATGACGATCAAAAAGCACAGCTCGAACGATTGAGG
GCGTCTGCAGTCAGCGTTGGGGTGCAAGAAAGAACAGAAGCTGGAGAAAA
CCCGTACAAAGAAAAGTAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:942134..942652-

>Gchil1271.t1 ID=Gchil1271.t1|Name=Gchil1271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00004437_pilon:942134..942652- (Gracilaria chilensis NLEC103_M9 male)
ATGTATGCAAATCATCGTTTGTCCCTGTACCGACGTATCATGCGATTGCA
TCGACTCAAACTTCCAGACATTCAGAGATCAATCGGCGACCAGTACGTCC
GTCAGGAATTTCGAGCACATCGTGATGTGAAACCGGAGCAGCAAAATCAA
TTCCTCCAGCAGTGGGAGGACTATGCTGCCCATCTCACCATGGAGGCTGA
TTTCTTTGGACTGGGACGCGATTTAGCAGAAAAAGAAGTTGAAGCCTTGA
ATGACGATCAAAAAGCACAGCTCGAACGATTGAGGGCGTCTGCAGTCAGC
GTTGGGGTGCAAGAAAGAACAGAAGCTGGAGAAAACCCGTACAAAGAAAA
GTAA
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