Gchil1272.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1272.t1
Unique NameGchil1272.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:943072..943590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707481.1
Preferred namePRPL17
PFAMsRibosomal_L17
Max annot lvl2759|Eukaryota
KEGG koko:K02879
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015934,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Evalue1.97e-63
EggNOG OGsCOG0203@1|root,KOG3280@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1272Gchil1272Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 943072..943590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1272.t1.stop1Gchil1272.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 943072..943074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1272.t1.CDS1Gchil1272.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 943072..943590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1272.t1.exon1Gchil1272.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 943072..943590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1272.t1.start1Gchil1272.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 943588..943590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1272.t1Gchil1272.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 943072..943590 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1272.t1 ID=Gchil1272.t1|Name=Gchil1272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=173bp
MNFTGFVPAAAAAPLAPSASRPNRCARSPFLGVSVSVPGNAPQNAAALPL
IPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAV
RKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGY
TRVLRTMPRRGDNAPMGIIELV*
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spliced messenger RNA

>Gchil1272.t1 ID=Gchil1272.t1|Name=Gchil1272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004437_pilon:943072..943590- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTTACAGGATTCGTACCTGCCGCCGCGGCTGCGCCGCTGGCGCC
TTCGGCGAGCCGCCCCAATCGATGCGCGCGCTCGCCGTTTCTCGGCGTTT
CTGTCAGCGTGCCTGGTAATGCTCCACAAAACGCTGCTGCTTTGCCTCTC
ATTCCGAATATCGTCGCAATTCGCCATGGAAAACGCATTCCAAAACTGAA
CAAGCCAGCTGATCAACGCAAGGCTCTACTCCGTGCACTTACCACGGAAT
TAATTCGTCACGGGCGTATTAAAACTACGCATGCGCGTGCACAGGCTGTC
AGAAAGACTGCTGACCATATGATTACATTGGCAAAAAATGGATCTTTACA
TGCTAGACGACAGGCGCTTGGATACATTTACGACAAGCAGCTTGTTCATG
CTTTGTTTGACCAGGCACCTGAGAGATATGGAGATCGAAATGGTGGTTAT
ACTCGCGTTTTGCGTACTATGCCGAGAAGGGGGGATAATGCTCCAATGGG
TATTATTGAGCTTGTTTAG
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protein sequence of Gchil1272.t1

>Gchil1272.t1 ID=Gchil1272.t1|Name=Gchil1272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=173bp
MNFTGFVPAAAAAPLAPSASRPNRCARSPFLGVSVSVPGNAPQNAAALPL
IPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAV
RKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGY
TRVLRTMPRRGDNAPMGIIELV*
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mRNA from alignment at tig00004437_pilon:943072..943590-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1272.t1 ID=Gchil1272.t1|Name=Gchil1272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004437_pilon:943072..943590- (Gracilaria chilensis NLEC103_M9 male)
ATGAACTTTACAGGATTCGTACCTGCCGCCGCGGCTGCGCCGCTGGCGCC
TTCGGCGAGCCGCCCCAATCGATGCGCGCGCTCGCCGTTTCTCGGCGTTT
CTGTCAGCGTGCCTGGTAATGCTCCACAAAACGCTGCTGCTTTGCCTCTC
ATTCCGAATATCGTCGCAATTCGCCATGGAAAACGCATTCCAAAACTGAA
CAAGCCAGCTGATCAACGCAAGGCTCTACTCCGTGCACTTACCACGGAAT
TAATTCGTCACGGGCGTATTAAAACTACGCATGCGCGTGCACAGGCTGTC
AGAAAGACTGCTGACCATATGATTACATTGGCAAAAAATGGATCTTTACA
TGCTAGACGACAGGCGCTTGGATACATTTACGACAAGCAGCTTGTTCATG
CTTTGTTTGACCAGGCACCTGAGAGATATGGAGATCGAAATGGTGGTTAT
ACTCGCGTTTTGCGTACTATGCCGAGAAGGGGGGATAATGCTCCAATGGG
TATTATTGAGCTTGTTTAG
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Coding sequence (CDS) from alignment at tig00004437_pilon:943072..943590-

>Gchil1272.t1 ID=Gchil1272.t1|Name=Gchil1272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00004437_pilon:943072..943590- (Gracilaria chilensis NLEC103_M9 male)
ATGAACTTTACAGGATTCGTACCTGCCGCCGCGGCTGCGCCGCTGGCGCC
TTCGGCGAGCCGCCCCAATCGATGCGCGCGCTCGCCGTTTCTCGGCGTTT
CTGTCAGCGTGCCTGGTAATGCTCCACAAAACGCTGCTGCTTTGCCTCTC
ATTCCGAATATCGTCGCAATTCGCCATGGAAAACGCATTCCAAAACTGAA
CAAGCCAGCTGATCAACGCAAGGCTCTACTCCGTGCACTTACCACGGAAT
TAATTCGTCACGGGCGTATTAAAACTACGCATGCGCGTGCACAGGCTGTC
AGAAAGACTGCTGACCATATGATTACATTGGCAAAAAATGGATCTTTACA
TGCTAGACGACAGGCGCTTGGATACATTTACGACAAGCAGCTTGTTCATG
CTTTGTTTGACCAGGCACCTGAGAGATATGGAGATCGAAATGGTGGTTAT
ACTCGCGTTTTGCGTACTATGCCGAGAAGGGGGGATAATGCTCCAATGGG
TATTATTGAGCTTGTTTAG
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