Gchil1272.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1272.t1
Unique NameGchil1272.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length173
Homology
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A2V3IJG3_9FLOR (50S ribosomal protein L17, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJG3_9FLOR)

HSP 1 Score: 246 bits (628), Expect = 1.360e-80
Identity = 136/177 (76.84%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MNFTGFVPAAAAAPLAPSAS--RPNRCARSP--FLGVSVSVPGNAPQNAAALPLIP-NIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            MN   F P+A   PL PS+S  R + C  +P  FLG  V+         A LP  P  IVAIRHGKR+PKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRK ADHMITLAKNGSLHARRQALGYIYDKQLVHALF+QAPERY DRNGGYTRVLRTMPRRGDNAPMGIIELV
Sbjct:   31 MNRPAFSPSA---PLLPSSSPIRAHTCLAAPPFFLGARVAANRTPSTRHATLPTAPAQIVAIRHGKRVPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKHADHMITLAKNGSLHARRQALGYIYDKQLVHALFEQAPERYADRNGGYTRVLRTMPRRGDNAPMGIIELV 204          
BLAST of Gchil1272.t1 vs. uniprot
Match: R7QA11_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA11_CHOCR)

HSP 1 Score: 233 bits (595), Expect = 8.490e-75
Identity = 121/154 (78.57%), Postives = 131/154 (85.06%), Query Frame = 0
Query:   25 CARSPFLGVSVSV------PGNAPQNAAALPLIPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            C+R  F G +++V      P + P   A LP +P I A+RHGKRI KLNKPADQRKALLRALTTELIRHGRI+TTHARAQAVRK ADHMITLAK+GSLHARRQALGYIYDK LVHALF+Q PERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV
Sbjct:  107 CSRHQFRGTAIAVSNRVVLPSSMPI-VAPLPAMPTIEAMRHGKRIAKLNKPADQRKALLRALTTELIRHGRIQTTHARAQAVRKPADHMITLAKDGSLHARRQALGYIYDKALVHALFEQVPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 259          
BLAST of Gchil1272.t1 vs. uniprot
Match: M2W5B3_GALSU (50S ribosomal protein L17 (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W5B3_GALSU)

HSP 1 Score: 201 bits (512), Expect = 2.790e-63
Identity = 103/155 (66.45%), Postives = 123/155 (79.35%), Query Frame = 0
Query:   24 RCARSPFLGVSVSVPGNAPQNAAA------LPLIPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            RC +S F+GV+V+      +  A+      LP +  +VAIRHG R+ KL KPADQRKAL+RALTTEL+RHGRIKTT ARA+ VR  AD MI+L+K GSLHARRQA+ +IYDKQLVHALF+QAPERY DRNGGYTR+L TMPR+GDNA MG+IELV
Sbjct:   27 RCLQSQFMGVAVNSKKVQQRQRASSFTPCLLPRLEPLVAIRHGDRLKKLGKPADQRKALIRALTTELLRHGRIKTTLARAKVVRSFADKMISLSKEGSLHARRQAMAFIYDKQLVHALFEQAPERYADRNGGYTRILHTMPRKGDNAEMGVIELV 181          
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A5N6NAD5_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NAD5_9ASTR)

HSP 1 Score: 194 bits (492), Expect = 1.600e-60
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = 0
Query:   54 IVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            I A+RHG+R+PKLN+P DQRKALLRALTT+L++HGRIKTT ARA AVRK  D MITLAK+GSLH RRQALG+IY+KQ+VHALF + PERYG+RNGGYTR++RT+PRRGDNAPM  IELV
Sbjct:   43 ISAMRHGRRVPKLNRPPDQRKALLRALTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 161          
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A1X6PCU2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCU2_PORUM)

HSP 1 Score: 194 bits (493), Expect = 1.830e-60
Identity = 110/174 (63.22%), Postives = 127/174 (72.99%), Query Frame = 0
Query:    6 FVPAAAAAPLAPSASRPNRCAR--SPFLGVSVSVP-----GNAPQNAAALPLIPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            FV AA AA L P A R   C    S F G ++  P        P  A  LP++P I A+RH K++ KL KPADQRKAL+R+LTTE+IRHGRI TT  RA+AVRK  D MI LAK+GSLH+RRQALGYI+DK LVH+LF+ APERYG+RNGGY RVLRTMPRRGDNA M IIELV
Sbjct:    4 FVSAAGAA-LTPRAPRAAACTARSSSFAGAAIVAPLPRAAVGPPAVAPVLPVMPVIEAMRHRKKVDKLGKPADQRKALMRSLTTEVIRHGRITTTLVRARAVRKHVDAMIGLAKDGSLHSRRQALGYIFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176          
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A7S0ZIV9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIV9_9RHOD)

HSP 1 Score: 192 bits (487), Expect = 9.200e-60
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 0
Query:   51 IPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            +  +  IRHG ++  LN PADQRKALLRALTTELIRHGRI TT AR + VRKTAD MITLAK+ SLHARRQALGY+YDK LVHALF+  P+RY DRNGGYTRVLRTMPR+GDNAPMGIIELV
Sbjct:   40 VSTLTMIRHGNKVKHLNLPADQRKALLRALTTELIRHGRITTTLARCKEVRKTADKMITLAKDNSLHARRQALGYVYDKDLVHALFEGVPDRYADRNGGYTRVLRTMPRKGDNAPMGIIELV 161          
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A2G3CBW8_CAPCH (50S ribosomal protein L17, chloroplastic n=3 Tax=Capsicum TaxID=4071 RepID=A0A2G3CBW8_CAPCH)

HSP 1 Score: 191 bits (484), Expect = 2.030e-59
Identity = 87/119 (73.11%), Postives = 108/119 (90.76%), Query Frame = 0
Query:   54 IVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            + A+RHG+++PKLN+P DQR+ALLR LTT+L++HGRIKTT ARA+AVRK AD MIT+AK+GSLH RRQALG+IY+KQ+VHALF + PERYG+RNGGYTR++RT+PRRGDNAPM  IELV
Sbjct:   35 VFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYADKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 153          
BLAST of Gchil1272.t1 vs. uniprot
Match: D8RD40_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RD40_SELML)

HSP 1 Score: 189 bits (481), Expect = 2.350e-59
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 0
Query:   56 AIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            A+RHG+++PKLN+P DQR+ALLR L T+L+RHGRIKTT ARA+A+R   DHMITLAK GSLH RRQALGYIYDKQLVHALF + PERY +R+GGYTRV+RTMPRRGDNAPM  IELV
Sbjct:    9 AMRHGRKVPKLNRPPDQRRALLRGLATQLLRHGRIKTTRARAKAMRPHVDHMITLAKGGSLHQRRQALGYIYDKQLVHALFAEVPERYSERSGGYTRVIRTMPRRGDNAPMAYIELV 125          
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A6P3YQJ8_ZIZJJ (50S ribosomal protein L17, chloroplastic n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3YQJ8_ZIZJJ)

HSP 1 Score: 192 bits (488), Expect = 4.360e-59
Identity = 90/119 (75.63%), Postives = 105/119 (88.24%), Query Frame = 0
Query:   54 IVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            I A+RHGKR+PKLN+P DQRKALLR LTT+L++HGRIKTT ARA A+RK  D MITLAK GSLH RRQALG+IY+KQ+VHALF + PERYG+RNGGYTR++RT+PRRGDNAPM  IELV
Sbjct:  103 IYAMRHGKRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 221          
BLAST of Gchil1272.t1 vs. uniprot
Match: A0A6J1I1G7_CUCMA (50S ribosomal protein L17, chloroplastic n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1I1G7_CUCMA)

HSP 1 Score: 192 bits (487), Expect = 4.390e-59
Identity = 93/148 (62.84%), Postives = 115/148 (77.70%), Query Frame = 0
Query:   25 CARSPFLGVSVSVPGNAPQNAAALPLIPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAVRKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGYTRVLRTMPRRGDNAPMGIIELV 172
            C  +P + +  S   +  QN   +     + A+RHGKR+PKLN+P DQR+ALLR LTT+L++HGRIKTT ARA AVRK  D MITLAK+GSLH RRQALG+IY+KQ+VHALF +  +RYG+RNGGYTR+LRT+PRRGDNAPM  IELV
Sbjct:   63 CPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPMAFIELV 210          
The following BLAST results are available for this feature:
BLAST of Gchil1272.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJG3_9FLOR1.360e-8076.8450S ribosomal protein L17, chloroplastic n=1 Tax=G... [more]
R7QA11_CHOCR8.490e-7578.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2W5B3_GALSU2.790e-6366.4550S ribosomal protein L17 (Plastid) n=1 Tax=Galdie... [more]
A0A5N6NAD5_9ASTR1.600e-6076.47Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A1X6PCU2_PORUM1.830e-6063.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZIV9_9RHOD9.200e-6077.05Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2G3CBW8_CAPCH2.030e-5973.1150S ribosomal protein L17, chloroplastic n=3 Tax=C... [more]
D8RD40_SELML2.350e-5976.07Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A6P3YQJ8_ZIZJJ4.360e-5975.6350S ribosomal protein L17, chloroplastic n=1 Tax=Z... [more]
A0A6J1I1G7_CUCMA4.390e-5962.8450S ribosomal protein L17, chloroplastic n=3 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 63..172
e-value: 3.4E-43
score: 144.5
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 76..172
e-value: 1.4E-35
score: 122.1
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 54..172
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 61..172
score: 25.95064
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10Ribosomal protein L17coord: 51..172
e-value: 9.1E-48
score: 163.4
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 57..172
NoneNo IPR availablePANTHERPTHR14413:SF23SUBFAMILY NOT NAMEDcoord: 54..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:943072..943590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1272.t1Gchil1272.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004437_pilon 943072..943590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1272.t1 ID=Gchil1272.t1|Name=Gchil1272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=173bp
MNFTGFVPAAAAAPLAPSASRPNRCARSPFLGVSVSVPGNAPQNAAALPL
IPNIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAQAV
RKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQAPERYGDRNGGY
TRVLRTMPRRGDNAPMGIIELV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_L17
IPR036373Ribosomal_L17_sf