Gchil8065.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8065.t1
Unique NameGchil8065.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length390
Homology
BLAST of Gchil8065.t1 vs. uniprot
Match: A0A2V3IJL6_9FLOR (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJL6_9FLOR)

HSP 1 Score: 303 bits (777), Expect = 1.490e-99
Identity = 150/219 (68.49%), Postives = 170/219 (77.63%), Query Frame = 0
Query:  178 MDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHA-------HAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNYC 389
            MDLF +S YTFG K  Q +SK +Q+ S  +LA  LR  Y  RG+RR+VAAV+LVH+HRFPH+LLLQRRDGRGEFVLPGGRLRPGES E+GLQRKL SK+TP +                        +AR DVGEKLCSWYAIDFDRRY PYVPAHVTKPKEELH+YAVSLPS FTFAVP NL LLAVPI ++FNN+ATYGD+ISAIPSVLS+YHFNYC
Sbjct:    1 MDLFHISNYTFGTKDEQARSKAMQSLSKTQLAQILRDNYKQRGIRRSVAAVILVHEHRFPHILLLQRRDGRGEFVLPGGRLRPGESNEEGLQRKLTSKLTPVSPXXXXXXXXXXXDQMLELDDQLQQSARPDVGEKLCSWYAIDFDRRYFPYVPAHVTKPKEELHVYAVSLPSKFTFAVPKNLHLLAVPICDVFNNSATYGDIISAIPSVLSRYHFNYC 219          
BLAST of Gchil8065.t1 vs. uniprot
Match: R7QCN0_CHOCR (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCN0_CHOCR)

HSP 1 Score: 277 bits (708), Expect = 7.260e-87
Identity = 130/228 (57.02%), Postives = 167/228 (73.25%), Query Frame = 0
Query:  162 SSSGDDAFGALDVLCTMDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNYC 389
            + S +D F  L+ L +MD++D+S YTFG K  +++SK++Q     E+A  L K Y  RG+RR+V  V+LVH H FPH+LLLQR DG+GE+ LPGG+LRPGES E+GLQRKL +K+ P+     DE +            LDVGE++C+WYA DF RRY PYVPAHVTK KEELH+Y V LP+ F F+VP NLQL+AVP+FELF N+ATYGDVISAIP +LS++H NYC
Sbjct:  163 TDSDEDPFAGLNELASMDIYDLSNYTFGKKNQESKSKVMQLMPRAEMAKVLEKNYEERGMRRSVGGVILVHSHNFPHILLLQRSDGKGEYALPGGKLRPGESDEEGLQRKLNTKLKPEGQADTDEEQE-----------LDVGERICNWYATDFHRRYYPYVPAHVTKVKEELHVYIVLLPNKFMFSVPKNLQLVAVPLFELFKNSATYGDVISAIPPLLSRWHINYC 379          
BLAST of Gchil8065.t1 vs. uniprot
Match: A0A7S0G5F4_9RHOD (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5F4_9RHOD)

HSP 1 Score: 206 bits (524), Expect = 1.930e-60
Identity = 105/213 (49.30%), Postives = 142/213 (66.67%), Query Frame = 0
Query:  177 TMDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDAS-ETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNY 388
            T++L+DVSKYTFG K  ++Q    +++S  E    L + Y  RG+RR+V AV+L+ +HRFPH+LLLQ       FVLPGGRLRPGE+  DGL RKL SK++P     TP E E              +GE++ +WY+ DF  R  PY+PAHVTKPKE   ++ V LP S TFAVP + QLLAVP+FE+++N   YG VI+A+PS+LS++H N+
Sbjct:   92 TLNLYDVSKYTFGTK-GESQKDSKKSSSAEERQKDLEEKYKKRGMRRSVGAVLLLQNHRFPHILLLQSSKRTKNFVLPGGRLRPGENDVDGLLRKLQSKLSPPPDVATPPEFE--------------IGEQIATWYSPDFSERRYPYIPAHVTKPKESHAVFTVQLPDSCTFAVPKSYQLLAVPLFEVYDNMEQYGPVITAVPSLLSRFHMNF 289          
BLAST of Gchil8065.t1 vs. uniprot
Match: M2XR30_GALSU (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XR30_GALSU)

HSP 1 Score: 192 bits (488), Expect = 6.170e-56
Identity = 100/212 (47.17%), Postives = 138/212 (65.09%), Query Frame = 0
Query:  177 TMDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNY 388
            T++L+ V  YTFG K+A   S+     +P      L++ Y  RGLR +VA V+LVH HR PHVL+LQR    G F LPGGRLRPGE   +GL RKL +++         +S S+   H       +VG+ L +W+  DF     PY+P HVTKPKE+L++Y V LP S  F+VP++LQLLA+P+F++FNNA  YG+VIS++P++LS+YH NY
Sbjct:   36 TVNLYKVDNYTFGTKQA---SQKQHERNP----QRLKEKYQERGLRHSVAGVLLVHHHRHPHVLVLQRTKDAGSFWLPGGRLRPGEGDLEGLSRKLDNRL---------KSPSQERSH------WEVGDFLATWWYPDFSDNRYPYIPPHVTKPKEKLNLYLVQLPESCAFSVPSDLQLLAIPLFQVFNNAEQYGEVISSLPTLLSRYHVNY 225          
BLAST of Gchil8065.t1 vs. uniprot
Match: L8GVB5_ACACA (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVB5_ACACA)

HSP 1 Score: 178 bits (452), Expect = 1.090e-50
Identity = 93/212 (43.87%), Postives = 129/212 (60.85%), Query Frame = 0
Query:  177 TMDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNY 388
            T++L+++ KYTFG K AQ +     AA    + D     Y   G+RR V AV+LVH H  PHVLLLQ   G   F LPGGRL+PGE+  DGL+RKL  K+ P              ++++     +VGE LC W+  +F+    PY+P H+T+PKE   I+ V LP    FAVP NL+LLAVPIF+L++NA+ YG +IS++P  L +++F Y
Sbjct:   25 TINLYNLEKYTFGKKEAQMEKDTSVAARLLRMKD----MYEREGMRRTVDAVLLVHQHNHPHVLLLQI--GNTFFKLPGGRLKPGENEVDGLKRKLTKKLAP--------------NYSNYQLDWEVGELLCQWWRPNFETLQYPYIPPHITRPKECKKIFLVQLPERCVFAVPKNLKLLAVPIFDLYDNASQYGPIISSLPQTLGRFNFTY 216          
BLAST of Gchil8065.t1 vs. uniprot
Match: A4S1X4_OSTLU (Pre-mRNA cleavage factor Im 25 kDa subunit n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S1X4_OSTLU)

HSP 1 Score: 165 bits (418), Expect = 8.460e-46
Identity = 86/210 (40.95%), Postives = 124/210 (59.05%), Query Frame = 0
Query:  178 MDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFN 387
            +D++ +S YTFG KRA+ +      A+  E    +R  Y   G RR+V A+ +V  HR PHVLLLQ       F LPGGRLR GE   +GL RK+ +K+ P+  +  ++ E             D+G+++ +WY   ++ +  PY+PAH+TKPKEE  ++   LP    FAVP NL+LLAVP+FEL+ N   YG  I++IP +LS+Y  N
Sbjct:   12 VDVYSLSNYTFGTKRARGEKD----ATAAERLLRMRAQYEKEGKRRSVGAICMVSQHRTPHVLLLQITPT--SFKLPGGRLRAGEGDVEGLARKMRNKLQPERDDGLEQYE------------FDIGDQVATWYRTSYEPQMYPYLPAHITKPKEEYRMFVAHLPEKCYFAVPKNLKLLAVPLFELYGNPGKYGAEIASIPHLLSRYRLN 203          
BLAST of Gchil8065.t1 vs. uniprot
Match: A0A5J4Z888_PORPP (Pre-mRNA cleavage factor Im 25 kDa subunit 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z888_PORPP)

HSP 1 Score: 169 bits (429), Expect = 8.850e-46
Identity = 91/226 (40.27%), Postives = 130/226 (57.52%), Query Frame = 0
Query:  177 TMDLFDVSKYTFGIKRAQTQ------------SKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRD---GRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFN 387
            T++++++  Y+FG+K AQ               +L    SP + A   R+ Y  RG RR+VAA + VH+H FPH+LLL+ R    G   + LPGGRLRPGE+  DG+ RKL S +    +         H+    A +  +VG ++  WY  DF     PY+  HV  P+EELH+YAV LPSS TF VP +L+L+AVP+F++F   A YG +I+++P  LS  H N
Sbjct:  123 TLNIYNLEAYSFGVKPAQINLPPRTGGGAPFGMRLEYRQSP-QYALKKRQRYEERGTRRSVAAALFVHEHFFPHILLLRERAALAGVPAYFLPGGRLRPGETDADGVSRKLESALGHGVA-------GSHSETGSAGSSWEVGPQMSVWYGPDFSNNLYPYIAPHVDTPREELHVYAVYLPSSRTFVVPKHLELIAVPLFDIFQQPARYGAIIASLPVSLSNLHMN 340          
BLAST of Gchil8065.t1 vs. uniprot
Match: A0A8J4Q5E7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q5E7_9MYCE)

HSP 1 Score: 164 bits (415), Expect = 2.220e-45
Identity = 88/216 (40.74%), Postives = 127/216 (58.80%), Query Frame = 0
Query:  177 TMDLFDVS-KYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITP---DASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNY 388
            T+ L++ +  Y+FGIK    +       S       ++ TY   G+R+ V A+++VHDH  PH+LLLQ   G   F LPGG+L+PGES  DGLQRKL  K+ P   + SETP                 ++G+ + +W+  +F+    PY+  H TKPKE   +Y V+LP   TFAVP+NL L AVP+FE++NNA  YG +IS +P ++S+Y+F Y
Sbjct:    6 TLTLYNFNTSYSFGIKDPVVEKD----PSVTSRLARMKDTYEKEGIRKTVEAIIIVHDHGHPHILLLQI--GNSFFKLPGGKLKPGESEIDGLQRKLTKKLLPIGSNESETP----------------WEIGDHVSTWWRPNFEPSIYPYITPHTTKPKECKKLYVVTLPEKCTFAVPSNLTLRAVPLFEIYNNATRYGSIISCVPQLISRYNFVY 199          
BLAST of Gchil8065.t1 vs. uniprot
Match: A0A7S1PJ78_9EUKA (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1PJ78_9EUKA)

HSP 1 Score: 164 bits (415), Expect = 2.290e-45
Identity = 83/212 (39.15%), Postives = 124/212 (58.49%), Query Frame = 0
Query:  178 MDLFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQ-RRDGRGEFVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNY 388
            +DL+D+S Y FG K  Q +       S  E  + +R+ +  +G++R V AV++VH H  PH+LLLQ   + +G F LPGG+ +P E+ E+ + RK+  K+ PD  +   E +              VG+ L  WY  +FD +  PY PAH+TKPKE   ++ V+LP    F +P N   LAVP FE+++N   YG +I++IP +LSK+HFNY
Sbjct:   10 IDLYDISNYQFGNKARQLEKD----RSVTERMERMRREFPEKGVKRTVDAVVVVHKHNHPHLLLLQIGNEKKGFFKLPGGKAQPNETDEEAMLRKVKRKLAPDEEQFQSEWK--------------VGDCLSVWYRPNFDTQMYPYKPAHITKPKEIKKLFLVTLPDQCMFQIPQNFNFLAVPFFEIYDNTKRYGPIIASIPQMLSKFHFNY 203          
BLAST of Gchil8065.t1 vs. uniprot
Match: A0A7S4IQ56_9EUKA (Cleavage and polyadenylation specificity factor subunit 5 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQ56_9EUKA)

HSP 1 Score: 163 bits (412), Expect = 1.020e-44
Identity = 86/210 (40.95%), Postives = 124/210 (59.05%), Query Frame = 0
Query:  180 LFDVSKYTFGIKRAQTQSKLLQAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGEFVLPGGRLRPGESYEDGLQRKLASKI-TPDASETPDESESRHAHHAHAAARLDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVPNNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNY 388
            L+ ++ YTFG+K  Q +      A        +++ Y   G+RR V  V++VH H  PHVLLL  + G   F LPGGRLRPGES  DGL+RKL SK+ +P A   PD                ++G+ LC W+  +F +   PY+P H+TKPKE   I+ V L     F++P NL+L+AVP+F+L++N+A +G VIS+IP +L ++ F Y
Sbjct:   17 LYQLTNYTFGVKDPQLEKDTSVDAR----LQRMKQKYEKEGIRRTVEGVLVVHRHGHPHVLLL--KIGNSFFKLPGGRLRPGESAVDGLKRKLTSKLASPIADYHPD---------------WEIGDVLCEWHRPNFTKSMYPYIPCHITKPKERKTIFLVQLQEKCLFSIPKNLKLIAVPLFDLYDNSARFGPVISSIPQLLGRFTFIY 205          
The following BLAST results are available for this feature:
BLAST of Gchil8065.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJL6_9FLOR1.490e-9968.49Cleavage and polyadenylation specificity factor su... [more]
R7QCN0_CHOCR7.260e-8757.02Cleavage and polyadenylation specificity factor su... [more]
A0A7S0G5F4_9RHOD1.930e-6049.30Cleavage and polyadenylation specificity factor su... [more]
M2XR30_GALSU6.170e-5647.17Cleavage and polyadenylation specificity factor su... [more]
L8GVB5_ACACA1.090e-5043.87Cleavage and polyadenylation specificity factor su... [more]
A4S1X4_OSTLU8.460e-4640.95Pre-mRNA cleavage factor Im 25 kDa subunit n=2 Tax... [more]
A0A5J4Z888_PORPP8.850e-4640.27Pre-mRNA cleavage factor Im 25 kDa subunit 2 n=1 T... [more]
A0A8J4Q5E7_9MYCE2.220e-4540.74Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A7S1PJ78_9EUKA2.290e-4539.15Cleavage and polyadenylation specificity factor su... [more]
A0A7S4IQ56_9EUKA1.020e-4440.95Cleavage and polyadenylation specificity factor su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016706Cleavage/polyadenylation specificity factor subunit 5PFAMPF13869NUDIX_2coord: 177..384
e-value: 1.8E-56
score: 190.5
IPR016706Cleavage/polyadenylation specificity factor subunit 5PANTHERPTHR13047PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNITcoord: 177..389
NoneNo IPR availableGENE3D3.90.79.10Nucleoside Triphosphate Pyrophosphohydrolasecoord: 176..389
e-value: 4.2E-61
score: 207.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 275..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..95
NoneNo IPR availableCDDcd02883Nudix_Hydrolasecoord: 223..270
e-value: 2.31491E-6
score: 44.4218
IPR000086NUDIX hydrolase domainPROSITEPS51462NUDIXcoord: 221..381
score: 9.258817
IPR015797NUDIX hydrolase-like domain superfamilySUPERFAMILY55811Nudixcoord: 212..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:933770..935028 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8065.t1Gchil8065.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004435_pilon 933770..935028 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8065.t1 ID=Gchil8065.t1|Name=Gchil8065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=390bp
MEQGVDAVAERGSAGGADALPPALPDAAASPDAAASPDAAASPDAPASPD
ATAANGERSPRPLSPREMSPPAADGDERGDGGGDGGGDGGGDNDRHVSGD
AIGSSSGNGTGNGNGNGEALVEEQRAEAPHSAAEERSPASPASSARSTPR
PQSPRASSPASSSSGDDAFGALDVLCTMDLFDVSKYTFGIKRAQTQSKLL
QAASPRELADHLRKTYAARGLRRAVAAVMLVHDHRFPHVLLLQRRDGRGE
FVLPGGRLRPGESYEDGLQRKLASKITPDASETPDESESRHAHHAHAAAR
LDVGEKLCSWYAIDFDRRYLPYVPAHVTKPKEELHIYAVSLPSSFTFAVP
NNLQLLAVPIFELFNNAATYGDVISAIPSVLSKYHFNYC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016706Cleav_polyA_spec_factor_su5
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase-like_dom_sf