Gchil893.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil893.t1
Unique NameGchil893.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:943167..944555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51337.XP_004660096.1
Preferred nameALG11
PFAMsALG11_N,Glycos_transf_1
Max annot lvl33208|Metazoa
KEGG koko:K03844
KEGG ReactionR06127,R06128
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue3.56e-84
EggNOG OGsCOG0438@1|root,KOG1387@2759|Eukaryota,38HCD@33154|Opisthokonta,3BBAG@33208|Metazoa,3CZP5@33213|Bilateria,480CA@7711|Chordata,48WNG@7742|Vertebrata,3J29F@40674|Mammalia,35A5B@314146|Euarchontoglires,4PUUX@9989|Rodentia
EC2.4.1.131
DescriptionGDP-Man Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
COG categoryM
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil893Gchil893Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 943167..944555 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil893.t1.start1Gchil893.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 943167..943169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil893.t1.CDS1Gchil893.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 943167..944555 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil893.t1.exon1Gchil893.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 943167..944555 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil893.t1.stop1Gchil893.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 944553..944555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil893.t1Gchil893.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 943167..944555 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=463bp
MVSHYALVGYTVLLLLLALLGFRKNVRRKRKDLIKFRRRSRSIGFLHPLS
LDGGGGERVLWCAVLAVKKLWPHSHIVLYSAWKRAGLSVSNAVVASRERV
GSQFGLDLSGIEFEPVDISELAPLIDGERYTRFTLLLQAFGALRVGAKAY
AKQPVELLIDTANQSFSLIIPKLLGAETMAYVHYPTISTDMLSVVQSRKK
QFNNDASICSSRVKTYAKVGYYKLFACLYGLTARFVDIKVANSSWTASHL
RALWKGKIHRIFPPCNLDVETEIVDRERGLIVSVGQFRAEKNHQLQLEMM
RVLRDKYPGIKCRLEMIGGARNEKDRARATKLLESAEKESLPVCVRMNVS
SEELRNTLRRAWVGVHTMRDEHFGISVVELQSYGLVVIAHRSGGVEADIV
RNGRSGFLVRSAEGYADAVAMVLHDDELAARVRDESRKSCVRFSDNVFCM
RFSQVVDEYFRL*
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spliced messenger RNA

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000017_pilon:943167..944555+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCTCACTACGCGTTGGTTGGATATACTGTGCTTCTGCTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTGCGTCGCAAGCGCAAGGATCTTA
TCAAGTTTCGACGCCGATCACGCTCCATTGGCTTTCTTCACCCACTTAGT
CTGGACGGTGGCGGCGGCGAGCGCGTTCTGTGGTGTGCCGTGCTTGCGGT
GAAGAAATTGTGGCCCCACAGTCACATCGTGCTTTACTCGGCTTGGAAGC
GCGCGGGGTTGAGTGTTTCTAACGCAGTTGTCGCATCTCGTGAGCGAGTT
GGTTCGCAGTTCGGGCTGGATTTGTCTGGAATTGAGTTTGAACCGGTGGA
TATATCAGAGCTTGCTCCTCTGATTGACGGTGAACGGTACACTCGCTTCA
CATTGTTACTTCAGGCTTTCGGTGCTCTGCGTGTGGGGGCAAAGGCTTAT
GCGAAACAACCGGTGGAACTTTTGATTGACACTGCTAACCAAAGCTTTTC
GTTAATCATACCCAAGCTGCTTGGCGCTGAAACAATGGCATATGTGCATT
ACCCTACGATTTCAACGGATATGCTGAGCGTAGTTCAGTCAAGAAAGAAG
CAGTTCAACAACGATGCTAGTATTTGTTCTTCGCGCGTGAAAACGTATGC
GAAGGTAGGCTACTACAAATTATTCGCATGTTTGTACGGGTTGACGGCGC
GATTTGTAGACATCAAGGTGGCAAATTCGAGCTGGACTGCTTCACATTTA
CGCGCTCTATGGAAAGGAAAGATTCACCGTATCTTTCCACCGTGCAACTT
GGATGTAGAGACGGAGATTGTTGATCGCGAACGCGGTTTGATTGTGTCGG
TGGGTCAGTTTCGGGCCGAAAAGAATCACCAACTGCAGCTGGAGATGATG
CGAGTGTTAAGGGACAAATACCCGGGGATAAAATGCAGGCTTGAGATGAT
TGGAGGGGCGCGCAACGAAAAAGATCGTGCTCGAGCGACAAAACTGCTTG
AAAGCGCCGAGAAGGAATCATTGCCAGTTTGTGTGCGAATGAACGTCTCA
AGTGAGGAGTTGAGAAACACGTTGCGGCGCGCATGGGTAGGAGTGCACAC
TATGCGCGACGAGCATTTCGGTATCTCTGTGGTGGAGCTGCAGTCTTACG
GACTGGTGGTGATCGCGCATCGAAGCGGCGGGGTGGAGGCAGACATTGTG
CGGAACGGACGCAGCGGGTTCTTGGTGCGCTCGGCAGAGGGGTATGCTGA
TGCGGTTGCGATGGTATTGCACGACGATGAACTGGCAGCGCGGGTGCGCG
ATGAAAGCAGAAAGAGCTGCGTACGCTTCTCAGACAACGTTTTCTGTATG
CGCTTCAGTCAGGTGGTCGACGAGTACTTCCGGTTATAG
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protein sequence of Gchil893.t1

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=463bp
MVSHYALVGYTVLLLLLALLGFRKNVRRKRKDLIKFRRRSRSIGFLHPLS
LDGGGGERVLWCAVLAVKKLWPHSHIVLYSAWKRAGLSVSNAVVASRERV
GSQFGLDLSGIEFEPVDISELAPLIDGERYTRFTLLLQAFGALRVGAKAY
AKQPVELLIDTANQSFSLIIPKLLGAETMAYVHYPTISTDMLSVVQSRKK
QFNNDASICSSRVKTYAKVGYYKLFACLYGLTARFVDIKVANSSWTASHL
RALWKGKIHRIFPPCNLDVETEIVDRERGLIVSVGQFRAEKNHQLQLEMM
RVLRDKYPGIKCRLEMIGGARNEKDRARATKLLESAEKESLPVCVRMNVS
SEELRNTLRRAWVGVHTMRDEHFGISVVELQSYGLVVIAHRSGGVEADIV
RNGRSGFLVRSAEGYADAVAMVLHDDELAARVRDESRKSCVRFSDNVFCM
RFSQVVDEYFRL*
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mRNA from alignment at tig00000017_pilon:943167..944555+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000017_pilon:943167..944555+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCTCACTACGCGTTGGTTGGATATACTGTGCTTCTGCTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTGCGTCGCAAGCGCAAGGATCTTA
TCAAGTTTCGACGCCGATCACGCTCCATTGGCTTTCTTCACCCACTTAGT
CTGGACGGTGGCGGCGGCGAGCGCGTTCTGTGGTGTGCCGTGCTTGCGGT
GAAGAAATTGTGGCCCCACAGTCACATCGTGCTTTACTCGGCTTGGAAGC
GCGCGGGGTTGAGTGTTTCTAACGCAGTTGTCGCATCTCGTGAGCGAGTT
GGTTCGCAGTTCGGGCTGGATTTGTCTGGAATTGAGTTTGAACCGGTGGA
TATATCAGAGCTTGCTCCTCTGATTGACGGTGAACGGTACACTCGCTTCA
CATTGTTACTTCAGGCTTTCGGTGCTCTGCGTGTGGGGGCAAAGGCTTAT
GCGAAACAACCGGTGGAACTTTTGATTGACACTGCTAACCAAAGCTTTTC
GTTAATCATACCCAAGCTGCTTGGCGCTGAAACAATGGCATATGTGCATT
ACCCTACGATTTCAACGGATATGCTGAGCGTAGTTCAGTCAAGAAAGAAG
CAGTTCAACAACGATGCTAGTATTTGTTCTTCGCGCGTGAAAACGTATGC
GAAGGTAGGCTACTACAAATTATTCGCATGTTTGTACGGGTTGACGGCGC
GATTTGTAGACATCAAGGTGGCAAATTCGAGCTGGACTGCTTCACATTTA
CGCGCTCTATGGAAAGGAAAGATTCACCGTATCTTTCCACCGTGCAACTT
GGATGTAGAGACGGAGATTGTTGATCGCGAACGCGGTTTGATTGTGTCGG
TGGGTCAGTTTCGGGCCGAAAAGAATCACCAACTGCAGCTGGAGATGATG
CGAGTGTTAAGGGACAAATACCCGGGGATAAAATGCAGGCTTGAGATGAT
TGGAGGGGCGCGCAACGAAAAAGATCGTGCTCGAGCGACAAAACTGCTTG
AAAGCGCCGAGAAGGAATCATTGCCAGTTTGTGTGCGAATGAACGTCTCA
AGTGAGGAGTTGAGAAACACGTTGCGGCGCGCATGGGTAGGAGTGCACAC
TATGCGCGACGAGCATTTCGGTATCTCTGTGGTGGAGCTGCAGTCTTACG
GACTGGTGGTGATCGCGCATCGAAGCGGCGGGGTGGAGGCAGACATTGTG
CGGAACGGACGCAGCGGGTTCTTGGTGCGCTCGGCAGAGGGGTATGCTGA
TGCGGTTGCGATGGTATTGCACGACGATGAACTGGCAGCGCGGGTGCGCG
ATGAAAGCAGAAAGAGCTGCGTACGCTTCTCAGACAACGTTTTCTGTATG
CGCTTCAGTCAGGTGGTCGACGAGTACTTCCGGTTATAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:943167..944555+

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000017_pilon:943167..944555+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCTCACTACGCGTTGGTTGGATATACTGTGCTTCTGCTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTGCGTCGCAAGCGCAAGGATCTTA
TCAAGTTTCGACGCCGATCACGCTCCATTGGCTTTCTTCACCCACTTAGT
CTGGACGGTGGCGGCGGCGAGCGCGTTCTGTGGTGTGCCGTGCTTGCGGT
GAAGAAATTGTGGCCCCACAGTCACATCGTGCTTTACTCGGCTTGGAAGC
GCGCGGGGTTGAGTGTTTCTAACGCAGTTGTCGCATCTCGTGAGCGAGTT
GGTTCGCAGTTCGGGCTGGATTTGTCTGGAATTGAGTTTGAACCGGTGGA
TATATCAGAGCTTGCTCCTCTGATTGACGGTGAACGGTACACTCGCTTCA
CATTGTTACTTCAGGCTTTCGGTGCTCTGCGTGTGGGGGCAAAGGCTTAT
GCGAAACAACCGGTGGAACTTTTGATTGACACTGCTAACCAAAGCTTTTC
GTTAATCATACCCAAGCTGCTTGGCGCTGAAACAATGGCATATGTGCATT
ACCCTACGATTTCAACGGATATGCTGAGCGTAGTTCAGTCAAGAAAGAAG
CAGTTCAACAACGATGCTAGTATTTGTTCTTCGCGCGTGAAAACGTATGC
GAAGGTAGGCTACTACAAATTATTCGCATGTTTGTACGGGTTGACGGCGC
GATTTGTAGACATCAAGGTGGCAAATTCGAGCTGGACTGCTTCACATTTA
CGCGCTCTATGGAAAGGAAAGATTCACCGTATCTTTCCACCGTGCAACTT
GGATGTAGAGACGGAGATTGTTGATCGCGAACGCGGTTTGATTGTGTCGG
TGGGTCAGTTTCGGGCCGAAAAGAATCACCAACTGCAGCTGGAGATGATG
CGAGTGTTAAGGGACAAATACCCGGGGATAAAATGCAGGCTTGAGATGAT
TGGAGGGGCGCGCAACGAAAAAGATCGTGCTCGAGCGACAAAACTGCTTG
AAAGCGCCGAGAAGGAATCATTGCCAGTTTGTGTGCGAATGAACGTCTCA
AGTGAGGAGTTGAGAAACACGTTGCGGCGCGCATGGGTAGGAGTGCACAC
TATGCGCGACGAGCATTTCGGTATCTCTGTGGTGGAGCTGCAGTCTTACG
GACTGGTGGTGATCGCGCATCGAAGCGGCGGGGTGGAGGCAGACATTGTG
CGGAACGGACGCAGCGGGTTCTTGGTGCGCTCGGCAGAGGGGTATGCTGA
TGCGGTTGCGATGGTATTGCACGACGATGAACTGGCAGCGCGGGTGCGCG
ATGAAAGCAGAAAGAGCTGCGTACGCTTCTCAGACAACGTTTTCTGTATG
CGCTTCAGTCAGGTGGTCGACGAGTACTTCCGGTTATAG
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