Gchil893.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil893.t1
Unique Name	Gchil893.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:943167..944555 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	51337.XP_004660096.1
Preferred name	ALG11
PFAMs	ALG11_N,Glycos_transf_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03844
KEGG Reaction	R06127,R06128
KEGG Pathway	ko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG Module	M00055
GOs	GO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	3.56e-84
EggNOG OGs	COG0438@1\|root,KOG1387@2759\|Eukaryota,38HCD@33154\|Opisthokonta,3BBAG@33208\|Metazoa,3CZP5@33213\|Bilateria,480CA@7711\|Chordata,48WNG@7742\|Vertebrata,3J29F@40674\|Mammalia,35A5B@314146\|Euarchontoglires,4PUUX@9989\|Rodentia
EC	2.4.1.131
Description	GDP-Man Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
COG category	M
CAZy	GT4
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil893	Gchil893	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 943167..944555 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil893.t1.start1	Gchil893.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 943167..943169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil893.t1.CDS1	Gchil893.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 943167..944555 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil893.t1.exon1	Gchil893.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 943167..944555 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil893.t1.stop1	Gchil893.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 944553..944555 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil893.t1	Gchil893.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 943167..944555 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:943167..944555+
coding sequence from alignment at tig00000017_pilon:943167..944555+

mRNA sequence

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=463bp
MVSHYALVGYTVLLLLLALLGFRKNVRRKRKDLIKFRRRSRSIGFLHPLS
LDGGGGERVLWCAVLAVKKLWPHSHIVLYSAWKRAGLSVSNAVVASRERV
GSQFGLDLSGIEFEPVDISELAPLIDGERYTRFTLLLQAFGALRVGAKAY
AKQPVELLIDTANQSFSLIIPKLLGAETMAYVHYPTISTDMLSVVQSRKK
QFNNDASICSSRVKTYAKVGYYKLFACLYGLTARFVDIKVANSSWTASHL
RALWKGKIHRIFPPCNLDVETEIVDRERGLIVSVGQFRAEKNHQLQLEMM
RVLRDKYPGIKCRLEMIGGARNEKDRARATKLLESAEKESLPVCVRMNVS
SEELRNTLRRAWVGVHTMRDEHFGISVVELQSYGLVVIAHRSGGVEADIV
RNGRSGFLVRSAEGYADAVAMVLHDDELAARVRDESRKSCVRFSDNVFCM
RFSQVVDEYFRL*

spliced messenger RNA

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000017_pilon:943167..944555+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCTCACTACGCGTTGGTTGGATATACTGTGCTTCTGCTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTGCGTCGCAAGCGCAAGGATCTTA
TCAAGTTTCGACGCCGATCACGCTCCATTGGCTTTCTTCACCCACTTAGT
CTGGACGGTGGCGGCGGCGAGCGCGTTCTGTGGTGTGCCGTGCTTGCGGT
GAAGAAATTGTGGCCCCACAGTCACATCGTGCTTTACTCGGCTTGGAAGC
GCGCGGGGTTGAGTGTTTCTAACGCAGTTGTCGCATCTCGTGAGCGAGTT
GGTTCGCAGTTCGGGCTGGATTTGTCTGGAATTGAGTTTGAACCGGTGGA
TATATCAGAGCTTGCTCCTCTGATTGACGGTGAACGGTACACTCGCTTCA
CATTGTTACTTCAGGCTTTCGGTGCTCTGCGTGTGGGGGCAAAGGCTTAT
GCGAAACAACCGGTGGAACTTTTGATTGACACTGCTAACCAAAGCTTTTC
GTTAATCATACCCAAGCTGCTTGGCGCTGAAACAATGGCATATGTGCATT
ACCCTACGATTTCAACGGATATGCTGAGCGTAGTTCAGTCAAGAAAGAAG
CAGTTCAACAACGATGCTAGTATTTGTTCTTCGCGCGTGAAAACGTATGC
GAAGGTAGGCTACTACAAATTATTCGCATGTTTGTACGGGTTGACGGCGC
GATTTGTAGACATCAAGGTGGCAAATTCGAGCTGGACTGCTTCACATTTA
CGCGCTCTATGGAAAGGAAAGATTCACCGTATCTTTCCACCGTGCAACTT
GGATGTAGAGACGGAGATTGTTGATCGCGAACGCGGTTTGATTGTGTCGG
TGGGTCAGTTTCGGGCCGAAAAGAATCACCAACTGCAGCTGGAGATGATG
CGAGTGTTAAGGGACAAATACCCGGGGATAAAATGCAGGCTTGAGATGAT
TGGAGGGGCGCGCAACGAAAAAGATCGTGCTCGAGCGACAAAACTGCTTG
AAAGCGCCGAGAAGGAATCATTGCCAGTTTGTGTGCGAATGAACGTCTCA
AGTGAGGAGTTGAGAAACACGTTGCGGCGCGCATGGGTAGGAGTGCACAC
TATGCGCGACGAGCATTTCGGTATCTCTGTGGTGGAGCTGCAGTCTTACG
GACTGGTGGTGATCGCGCATCGAAGCGGCGGGGTGGAGGCAGACATTGTG
CGGAACGGACGCAGCGGGTTCTTGGTGCGCTCGGCAGAGGGGTATGCTGA
TGCGGTTGCGATGGTATTGCACGACGATGAACTGGCAGCGCGGGTGCGCG
ATGAAAGCAGAAAGAGCTGCGTACGCTTCTCAGACAACGTTTTCTGTATG
CGCTTCAGTCAGGTGGTCGACGAGTACTTCCGGTTATAG

protein sequence of Gchil893.t1

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=463bp
MVSHYALVGYTVLLLLLALLGFRKNVRRKRKDLIKFRRRSRSIGFLHPLS
LDGGGGERVLWCAVLAVKKLWPHSHIVLYSAWKRAGLSVSNAVVASRERV
GSQFGLDLSGIEFEPVDISELAPLIDGERYTRFTLLLQAFGALRVGAKAY
AKQPVELLIDTANQSFSLIIPKLLGAETMAYVHYPTISTDMLSVVQSRKK
QFNNDASICSSRVKTYAKVGYYKLFACLYGLTARFVDIKVANSSWTASHL
RALWKGKIHRIFPPCNLDVETEIVDRERGLIVSVGQFRAEKNHQLQLEMM
RVLRDKYPGIKCRLEMIGGARNEKDRARATKLLESAEKESLPVCVRMNVS
SEELRNTLRRAWVGVHTMRDEHFGISVVELQSYGLVVIAHRSGGVEADIV
RNGRSGFLVRSAEGYADAVAMVLHDDELAARVRDESRKSCVRFSDNVFCM
RFSQVVDEYFRL*

mRNA from alignment at tig00000017_pilon:943167..944555+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000017_pilon:943167..944555+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCTCACTACGCGTTGGTTGGATATACTGTGCTTCTGCTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTGCGTCGCAAGCGCAAGGATCTTA
TCAAGTTTCGACGCCGATCACGCTCCATTGGCTTTCTTCACCCACTTAGT
CTGGACGGTGGCGGCGGCGAGCGCGTTCTGTGGTGTGCCGTGCTTGCGGT
GAAGAAATTGTGGCCCCACAGTCACATCGTGCTTTACTCGGCTTGGAAGC
GCGCGGGGTTGAGTGTTTCTAACGCAGTTGTCGCATCTCGTGAGCGAGTT
GGTTCGCAGTTCGGGCTGGATTTGTCTGGAATTGAGTTTGAACCGGTGGA
TATATCAGAGCTTGCTCCTCTGATTGACGGTGAACGGTACACTCGCTTCA
CATTGTTACTTCAGGCTTTCGGTGCTCTGCGTGTGGGGGCAAAGGCTTAT
GCGAAACAACCGGTGGAACTTTTGATTGACACTGCTAACCAAAGCTTTTC
GTTAATCATACCCAAGCTGCTTGGCGCTGAAACAATGGCATATGTGCATT
ACCCTACGATTTCAACGGATATGCTGAGCGTAGTTCAGTCAAGAAAGAAG
CAGTTCAACAACGATGCTAGTATTTGTTCTTCGCGCGTGAAAACGTATGC
GAAGGTAGGCTACTACAAATTATTCGCATGTTTGTACGGGTTGACGGCGC
GATTTGTAGACATCAAGGTGGCAAATTCGAGCTGGACTGCTTCACATTTA
CGCGCTCTATGGAAAGGAAAGATTCACCGTATCTTTCCACCGTGCAACTT
GGATGTAGAGACGGAGATTGTTGATCGCGAACGCGGTTTGATTGTGTCGG
TGGGTCAGTTTCGGGCCGAAAAGAATCACCAACTGCAGCTGGAGATGATG
CGAGTGTTAAGGGACAAATACCCGGGGATAAAATGCAGGCTTGAGATGAT
TGGAGGGGCGCGCAACGAAAAAGATCGTGCTCGAGCGACAAAACTGCTTG
AAAGCGCCGAGAAGGAATCATTGCCAGTTTGTGTGCGAATGAACGTCTCA
AGTGAGGAGTTGAGAAACACGTTGCGGCGCGCATGGGTAGGAGTGCACAC
TATGCGCGACGAGCATTTCGGTATCTCTGTGGTGGAGCTGCAGTCTTACG
GACTGGTGGTGATCGCGCATCGAAGCGGCGGGGTGGAGGCAGACATTGTG
CGGAACGGACGCAGCGGGTTCTTGGTGCGCTCGGCAGAGGGGTATGCTGA
TGCGGTTGCGATGGTATTGCACGACGATGAACTGGCAGCGCGGGTGCGCG
ATGAAAGCAGAAAGAGCTGCGTACGCTTCTCAGACAACGTTTTCTGTATG
CGCTTCAGTCAGGTGGTCGACGAGTACTTCCGGTTATAG

Coding sequence (CDS) from alignment at tig00000017_pilon:943167..944555+

>Gchil893.t1 ID=Gchil893.t1|Name=Gchil893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000017_pilon:943167..944555+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCTCACTACGCGTTGGTTGGATATACTGTGCTTCTGCTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTGCGTCGCAAGCGCAAGGATCTTA
TCAAGTTTCGACGCCGATCACGCTCCATTGGCTTTCTTCACCCACTTAGT
CTGGACGGTGGCGGCGGCGAGCGCGTTCTGTGGTGTGCCGTGCTTGCGGT
GAAGAAATTGTGGCCCCACAGTCACATCGTGCTTTACTCGGCTTGGAAGC
GCGCGGGGTTGAGTGTTTCTAACGCAGTTGTCGCATCTCGTGAGCGAGTT
GGTTCGCAGTTCGGGCTGGATTTGTCTGGAATTGAGTTTGAACCGGTGGA
TATATCAGAGCTTGCTCCTCTGATTGACGGTGAACGGTACACTCGCTTCA
CATTGTTACTTCAGGCTTTCGGTGCTCTGCGTGTGGGGGCAAAGGCTTAT
GCGAAACAACCGGTGGAACTTTTGATTGACACTGCTAACCAAAGCTTTTC
GTTAATCATACCCAAGCTGCTTGGCGCTGAAACAATGGCATATGTGCATT
ACCCTACGATTTCAACGGATATGCTGAGCGTAGTTCAGTCAAGAAAGAAG
CAGTTCAACAACGATGCTAGTATTTGTTCTTCGCGCGTGAAAACGTATGC
GAAGGTAGGCTACTACAAATTATTCGCATGTTTGTACGGGTTGACGGCGC
GATTTGTAGACATCAAGGTGGCAAATTCGAGCTGGACTGCTTCACATTTA
CGCGCTCTATGGAAAGGAAAGATTCACCGTATCTTTCCACCGTGCAACTT
GGATGTAGAGACGGAGATTGTTGATCGCGAACGCGGTTTGATTGTGTCGG
TGGGTCAGTTTCGGGCCGAAAAGAATCACCAACTGCAGCTGGAGATGATG
CGAGTGTTAAGGGACAAATACCCGGGGATAAAATGCAGGCTTGAGATGAT
TGGAGGGGCGCGCAACGAAAAAGATCGTGCTCGAGCGACAAAACTGCTTG
AAAGCGCCGAGAAGGAATCATTGCCAGTTTGTGTGCGAATGAACGTCTCA
AGTGAGGAGTTGAGAAACACGTTGCGGCGCGCATGGGTAGGAGTGCACAC
TATGCGCGACGAGCATTTCGGTATCTCTGTGGTGGAGCTGCAGTCTTACG
GACTGGTGGTGATCGCGCATCGAAGCGGCGGGGTGGAGGCAGACATTGTG
CGGAACGGACGCAGCGGGTTCTTGGTGCGCTCGGCAGAGGGGTATGCTGA
TGCGGTTGCGATGGTATTGCACGACGATGAACTGGCAGCGCGGGTGCGCG
ATGAAAGCAGAAAGAGCTGCGTACGCTTCTCAGACAACGTTTTCTGTATG
CGCTTCAGTCAGGTGGTCGACGAGTACTTCCGGTTATAG