Gchil865.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil865.t1
Unique NameGchil865.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:701079..702095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil865Gchil865Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 701079..702095 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil865.t1.start1Gchil865.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 701079..701081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil865.t1.CDS1Gchil865.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 701079..702095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil865.t1.exon1Gchil865.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 701079..702095 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil865.t1.stop1Gchil865.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 702093..702095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil865.t1Gchil865.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 701079..702095 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil865.t1 ID=Gchil865.t1|Name=Gchil865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MNFLFSPSQRNAGIRTFVAPFTAPAFTIFGVRVSRDHILRLSAILTLRTL
LSIVDLPLEETASAYLASLLSSITNVTVFLALTSNYFHFEGLIGRIGSFI
FPSSRKPSAFVTIYSKVVFVLGPVVSWLETAVITYEIMRIARRWETRMQR
AQAQASTIPRRLLLALAFFCLVCTAAIATFLGMCHAKYAAGAVTACLSLL
SYSFFNDDANIVEASLLCLYTCSILVFGWLESQSLSDEARATLLIITVLL
VSVSMSRATRLLRLMMIGFEALCEEEQAGTKWGQGSVRRVFGVLTIIALT
FRTLVWSEDVHQGEYLPLLCRSVQVVAVVFLYILYSQQ*
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spliced messenger RNA

>Gchil865.t1 ID=Gchil865.t1|Name=Gchil865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000017_pilon:701079..702095+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTTTTGTTCTCTCCGTCGCAGCGAAATGCGGGCATTCGGACGTT
TGTGGCGCCTTTCACTGCGCCAGCCTTCACAATCTTTGGCGTACGAGTCT
CGCGCGACCACATTCTACGTCTGTCAGCCATTCTGACGCTTCGTACGCTG
CTATCCATCGTCGATCTTCCGCTGGAAGAGACTGCCTCTGCTTATTTGGC
TTCCCTTCTTTCGTCCATCACTAATGTAACTGTTTTTCTGGCACTCACAT
CTAACTATTTCCATTTCGAGGGGCTCATAGGGCGCATTGGTTCCTTTATT
TTCCCTTCTTCGAGAAAACCCTCTGCGTTCGTCACCATCTACTCAAAAGT
GGTGTTTGTGCTTGGGCCAGTTGTTTCTTGGCTTGAGACGGCTGTGATCA
CTTATGAGATTATGAGAATTGCGCGTCGATGGGAGACTCGGATGCAGCGT
GCACAGGCTCAAGCTTCTACAATCCCGAGACGTCTTTTGCTAGCATTGGC
GTTTTTTTGCCTTGTGTGTACTGCCGCCATAGCCACTTTCTTAGGCATGT
GTCATGCCAAGTATGCCGCGGGTGCAGTCACAGCTTGTTTGTCGCTACTG
TCATATTCCTTTTTCAACGACGATGCTAATATTGTGGAAGCCTCTCTACT
GTGTTTGTACACATGTTCCATACTTGTATTCGGGTGGTTAGAATCACAAA
GCTTATCTGATGAAGCCAGAGCCACTCTACTTATTATTACTGTATTGCTT
GTTAGCGTGTCAATGTCAAGAGCTACGCGGCTGTTGCGACTGATGATGAT
TGGGTTTGAAGCGCTTTGTGAAGAGGAACAGGCAGGAACCAAATGGGGGC
AAGGGTCGGTACGACGGGTGTTTGGCGTGCTTACCATCATAGCGTTGACT
TTCCGGACGCTGGTTTGGAGTGAGGATGTGCACCAGGGTGAATATTTGCC
GTTGTTGTGCCGAAGTGTGCAGGTAGTTGCCGTGGTGTTTTTGTATATAT
TGTATTCGCAGCAGTGA
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protein sequence of Gchil865.t1

>Gchil865.t1 ID=Gchil865.t1|Name=Gchil865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MNFLFSPSQRNAGIRTFVAPFTAPAFTIFGVRVSRDHILRLSAILTLRTL
LSIVDLPLEETASAYLASLLSSITNVTVFLALTSNYFHFEGLIGRIGSFI
FPSSRKPSAFVTIYSKVVFVLGPVVSWLETAVITYEIMRIARRWETRMQR
AQAQASTIPRRLLLALAFFCLVCTAAIATFLGMCHAKYAAGAVTACLSLL
SYSFFNDDANIVEASLLCLYTCSILVFGWLESQSLSDEARATLLIITVLL
VSVSMSRATRLLRLMMIGFEALCEEEQAGTKWGQGSVRRVFGVLTIIALT
FRTLVWSEDVHQGEYLPLLCRSVQVVAVVFLYILYSQQ*
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mRNA from alignment at tig00000017_pilon:701079..702095+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil865.t1 ID=Gchil865.t1|Name=Gchil865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000017_pilon:701079..702095+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACTTTTTGTTCTCTCCGTCGCAGCGAAATGCGGGCATTCGGACGTT
TGTGGCGCCTTTCACTGCGCCAGCCTTCACAATCTTTGGCGTACGAGTCT
CGCGCGACCACATTCTACGTCTGTCAGCCATTCTGACGCTTCGTACGCTG
CTATCCATCGTCGATCTTCCGCTGGAAGAGACTGCCTCTGCTTATTTGGC
TTCCCTTCTTTCGTCCATCACTAATGTAACTGTTTTTCTGGCACTCACAT
CTAACTATTTCCATTTCGAGGGGCTCATAGGGCGCATTGGTTCCTTTATT
TTCCCTTCTTCGAGAAAACCCTCTGCGTTCGTCACCATCTACTCAAAAGT
GGTGTTTGTGCTTGGGCCAGTTGTTTCTTGGCTTGAGACGGCTGTGATCA
CTTATGAGATTATGAGAATTGCGCGTCGATGGGAGACTCGGATGCAGCGT
GCACAGGCTCAAGCTTCTACAATCCCGAGACGTCTTTTGCTAGCATTGGC
GTTTTTTTGCCTTGTGTGTACTGCCGCCATAGCCACTTTCTTAGGCATGT
GTCATGCCAAGTATGCCGCGGGTGCAGTCACAGCTTGTTTGTCGCTACTG
TCATATTCCTTTTTCAACGACGATGCTAATATTGTGGAAGCCTCTCTACT
GTGTTTGTACACATGTTCCATACTTGTATTCGGGTGGTTAGAATCACAAA
GCTTATCTGATGAAGCCAGAGCCACTCTACTTATTATTACTGTATTGCTT
GTTAGCGTGTCAATGTCAAGAGCTACGCGGCTGTTGCGACTGATGATGAT
TGGGTTTGAAGCGCTTTGTGAAGAGGAACAGGCAGGAACCAAATGGGGGC
AAGGGTCGGTACGACGGGTGTTTGGCGTGCTTACCATCATAGCGTTGACT
TTCCGGACGCTGGTTTGGAGTGAGGATGTGCACCAGGGTGAATATTTGCC
GTTGTTGTGCCGAAGTGTGCAGGTAGTTGCCGTGGTGTTTTTGTATATAT
TGTATTCGCAGCAGTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:701079..702095+

>Gchil865.t1 ID=Gchil865.t1|Name=Gchil865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000017_pilon:701079..702095+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACTTTTTGTTCTCTCCGTCGCAGCGAAATGCGGGCATTCGGACGTT
TGTGGCGCCTTTCACTGCGCCAGCCTTCACAATCTTTGGCGTACGAGTCT
CGCGCGACCACATTCTACGTCTGTCAGCCATTCTGACGCTTCGTACGCTG
CTATCCATCGTCGATCTTCCGCTGGAAGAGACTGCCTCTGCTTATTTGGC
TTCCCTTCTTTCGTCCATCACTAATGTAACTGTTTTTCTGGCACTCACAT
CTAACTATTTCCATTTCGAGGGGCTCATAGGGCGCATTGGTTCCTTTATT
TTCCCTTCTTCGAGAAAACCCTCTGCGTTCGTCACCATCTACTCAAAAGT
GGTGTTTGTGCTTGGGCCAGTTGTTTCTTGGCTTGAGACGGCTGTGATCA
CTTATGAGATTATGAGAATTGCGCGTCGATGGGAGACTCGGATGCAGCGT
GCACAGGCTCAAGCTTCTACAATCCCGAGACGTCTTTTGCTAGCATTGGC
GTTTTTTTGCCTTGTGTGTACTGCCGCCATAGCCACTTTCTTAGGCATGT
GTCATGCCAAGTATGCCGCGGGTGCAGTCACAGCTTGTTTGTCGCTACTG
TCATATTCCTTTTTCAACGACGATGCTAATATTGTGGAAGCCTCTCTACT
GTGTTTGTACACATGTTCCATACTTGTATTCGGGTGGTTAGAATCACAAA
GCTTATCTGATGAAGCCAGAGCCACTCTACTTATTATTACTGTATTGCTT
GTTAGCGTGTCAATGTCAAGAGCTACGCGGCTGTTGCGACTGATGATGAT
TGGGTTTGAAGCGCTTTGTGAAGAGGAACAGGCAGGAACCAAATGGGGGC
AAGGGTCGGTACGACGGGTGTTTGGCGTGCTTACCATCATAGCGTTGACT
TTCCGGACGCTGGTTTGGAGTGAGGATGTGCACCAGGGTGAATATTTGCC
GTTGTTGTGCCGAAGTGTGCAGGTAGTTGCCGTGGTGTTTTTGTATATAT
TGTATTCGCAGCAGTGA
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