Gchil1332.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1332.t1
Unique Name	Gchil1332.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	641

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:404061..405983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	101852.XP_008086092.1
PFAMs	NTP_transf_2,PAP_assoc
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0004652,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016073,GO:0016074,GO:0016180,GO:0016740,GO:0016772,GO:0016779,GO:0031123,GO:0031124,GO:0031126,GO:0034470,GO:0034641,GO:0034660,GO:0043144,GO:0043170,GO:0043628,GO:0043629,GO:0043631,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070566,GO:0071050,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Evalue	2.03e-19
EggNOG OGs	COG5260@1\|root,KOG2277@2759\|Eukaryota,38EW5@33154\|Opisthokonta,3NXI7@4751\|Fungi,3QPXA@4890\|Ascomycota,20X7A@147548\|Leotiomycetes
Description	Cid1 family poly A polymerase
COG category	D

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1332	Gchil1332	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 404061..405983 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1332.t1.start1	Gchil1332.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 404061..404063 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1332.t1.CDS1	Gchil1332.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 404061..405983 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1332.t1.exon1	Gchil1332.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 404061..405983 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1332.t1.stop1	Gchil1332.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 405981..405983 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1332.t1	Gchil1332.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 404061..405983 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:404061..405983+
coding sequence from alignment at tig00004433_pilon:404061..405983+

mRNA sequence

>Gchil1332.t1 ID=Gchil1332.t1|Name=Gchil1332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=641bp
MRLKNYLLRAVSAQNINSALLVNAHNWITTKQMSVSDPDLHDLLAQAFQA
IHTTGAASYHAKRAQLLRACSDGPQRSILVREHPPVPATFDSAAPAPAKA
AALVSATAPTPTAPPTSSPPDDAEREEAPRDNLLKRVRSRSFSALNGAER
LQTAAKRQKLHTNIEPAIQRTGTTRTAHVHDSQPHDSEDFRPLLQAEIDA
AVRESRVDRLKAPTVRYSYFTDDRRDEAVVSVEIRISVPQLARGATDGVV
RVSGVTRFGFEDDASEGGAIYKKAYNRAAKRAVEAVQEVRQKIEKWCEEE
RSMYLEDLVASWQREDFSRQCYRAFDKAKQVILGEAGGNLYGASVWLYGS
VPTGLVLCESDIDVSVSVPELFSSNKDEDAHVKKARSVAVLKYIANEMQK
ERMEKVFVVSQTRVPVLRYMDRETQVNVDVTLNKDRSLVLSRLLRKHMQK
DRRIWELCMIVKYWAKQRKVCGVPAGHINSMGWVLMVIFFTQHLAQPRLG
ALFRARNGGGNHATIVQEAWRDASGGARVNAQRTHALLLDFFRVFADRFD
YEHEAISINLQRRDDVLYVSEARASPPALFIEQPLQRGHNVVSYVSASSM
RLVRHEMRRAYYILSSRRERSCDAFAVRHFAHHETLFARR*

spliced messenger RNA

>Gchil1332.t1 ID=Gchil1332.t1|Name=Gchil1332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at tig00004433_pilon:404061..405983+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTTAAAAACTACCTTCTACGCGCAGTCTCCGCTCAAAACATAAA
CTCCGCGCTGCTCGTCAACGCCCACAACTGGATCACCACCAAGCAGATGT
CTGTGTCTGACCCAGATCTCCACGACCTTCTCGCCCAAGCCTTCCAGGCC
ATTCACACCACTGGCGCCGCCTCTTACCATGCCAAGCGCGCCCAGCTGCT
TCGCGCCTGCTCCGATGGTCCACAACGATCCATTCTGGTGCGCGAGCATC
CACCTGTGCCCGCCACTTTCGACTCTGCCGCGCCTGCGCCCGCCAAAGCT
GCCGCGCTTGTTAGCGCTACCGCGCCCACCCCCACCGCTCCCCCTACATC
CTCGCCACCTGATGATGCCGAGCGCGAAGAAGCGCCTCGTGATAACTTGT
TGAAAAGAGTGCGTTCCAGAAGCTTCTCGGCGCTAAACGGTGCAGAGAGG
TTGCAGACCGCCGCGAAGCGACAGAAATTGCACACAAACATTGAGCCGGC
GATTCAACGCACGGGCACGACCCGTACGGCGCACGTGCACGACTCCCAGC
CGCACGACAGTGAAGACTTTCGGCCGCTGTTGCAAGCGGAAATCGACGCG
GCGGTGAGAGAGAGTCGCGTAGATAGGCTGAAGGCACCCACTGTTCGCTA
CTCGTATTTTACGGATGATCGGCGGGACGAAGCAGTGGTGAGCGTAGAGA
TAAGAATTAGCGTTCCACAGCTGGCGCGTGGGGCGACAGATGGAGTGGTG
AGAGTGAGCGGGGTGACGCGGTTTGGATTTGAAGATGATGCCTCGGAAGG
GGGCGCAATCTACAAGAAGGCATACAACAGGGCGGCCAAACGCGCGGTAG
AGGCGGTGCAAGAGGTACGGCAAAAGATTGAAAAGTGGTGTGAAGAAGAG
CGGAGTATGTATCTGGAAGACCTGGTGGCGAGCTGGCAAAGAGAAGACTT
TAGCAGGCAGTGCTACAGGGCGTTTGACAAGGCAAAGCAAGTGATACTGG
GCGAAGCGGGGGGAAACCTGTATGGGGCGTCGGTTTGGCTGTATGGGTCG
GTACCGACTGGGCTGGTGCTGTGCGAATCAGACATTGACGTGTCGGTATC
GGTACCGGAGTTGTTTAGCTCGAACAAGGACGAAGACGCGCACGTGAAGA
AGGCGCGAAGCGTGGCGGTGCTCAAGTACATTGCGAACGAGATGCAAAAG
GAGCGGATGGAAAAGGTGTTTGTGGTGTCGCAGACACGGGTGCCGGTGCT
GCGGTACATGGACCGGGAGACGCAGGTGAACGTGGACGTGACGCTAAACA
AAGACCGGAGCCTTGTGTTGTCGAGACTATTGCGAAAGCACATGCAGAAG
GACAGGCGAATCTGGGAGCTGTGCATGATAGTCAAGTACTGGGCGAAACA
GCGCAAGGTGTGTGGGGTACCAGCGGGGCACATCAACTCGATGGGGTGGG
TGTTGATGGTGATCTTCTTCACACAGCACCTCGCACAGCCGCGGCTGGGG
GCGCTGTTCCGGGCGAGGAACGGCGGCGGCAACCACGCGACAATCGTACA
AGAGGCGTGGCGCGACGCGAGCGGCGGGGCGCGCGTCAACGCCCAGCGCA
CTCACGCGCTGCTCCTCGACTTCTTCCGCGTGTTTGCTGACCGCTTCGAC
TACGAGCACGAGGCCATCTCCATCAACTTGCAGAGGCGCGACGACGTGTT
ATACGTGTCAGAGGCACGTGCGTCACCTCCCGCGCTCTTCATCGAGCAGC
CGCTGCAGCGTGGTCACAATGTCGTGTCATACGTGTCGGCGAGTTCGATG
CGTCTGGTGCGCCATGAGATGCGTCGTGCCTACTACATTCTGTCGTCGCG
CCGAGAACGCTCCTGCGACGCCTTTGCTGTGCGCCACTTTGCCCATCACG
AAACTCTCTTTGCGCGCCGCTGA

protein sequence of Gchil1332.t1

>Gchil1332.t1 ID=Gchil1332.t1|Name=Gchil1332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=641bp
MRLKNYLLRAVSAQNINSALLVNAHNWITTKQMSVSDPDLHDLLAQAFQA
IHTTGAASYHAKRAQLLRACSDGPQRSILVREHPPVPATFDSAAPAPAKA
AALVSATAPTPTAPPTSSPPDDAEREEAPRDNLLKRVRSRSFSALNGAER
LQTAAKRQKLHTNIEPAIQRTGTTRTAHVHDSQPHDSEDFRPLLQAEIDA
AVRESRVDRLKAPTVRYSYFTDDRRDEAVVSVEIRISVPQLARGATDGVV
RVSGVTRFGFEDDASEGGAIYKKAYNRAAKRAVEAVQEVRQKIEKWCEEE
RSMYLEDLVASWQREDFSRQCYRAFDKAKQVILGEAGGNLYGASVWLYGS
VPTGLVLCESDIDVSVSVPELFSSNKDEDAHVKKARSVAVLKYIANEMQK
ERMEKVFVVSQTRVPVLRYMDRETQVNVDVTLNKDRSLVLSRLLRKHMQK
DRRIWELCMIVKYWAKQRKVCGVPAGHINSMGWVLMVIFFTQHLAQPRLG
ALFRARNGGGNHATIVQEAWRDASGGARVNAQRTHALLLDFFRVFADRFD
YEHEAISINLQRRDDVLYVSEARASPPALFIEQPLQRGHNVVSYVSASSM
RLVRHEMRRAYYILSSRRERSCDAFAVRHFAHHETLFARR*

mRNA from alignment at tig00004433_pilon:404061..405983+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1332.t1 ID=Gchil1332.t1|Name=Gchil1332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at tig00004433_pilon:404061..405983+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTTAAAAACTACCTTCTACGCGCAGTCTCCGCTCAAAACATAAA
CTCCGCGCTGCTCGTCAACGCCCACAACTGGATCACCACCAAGCAGATGT
CTGTGTCTGACCCAGATCTCCACGACCTTCTCGCCCAAGCCTTCCAGGCC
ATTCACACCACTGGCGCCGCCTCTTACCATGCCAAGCGCGCCCAGCTGCT
TCGCGCCTGCTCCGATGGTCCACAACGATCCATTCTGGTGCGCGAGCATC
CACCTGTGCCCGCCACTTTCGACTCTGCCGCGCCTGCGCCCGCCAAAGCT
GCCGCGCTTGTTAGCGCTACCGCGCCCACCCCCACCGCTCCCCCTACATC
CTCGCCACCTGATGATGCCGAGCGCGAAGAAGCGCCTCGTGATAACTTGT
TGAAAAGAGTGCGTTCCAGAAGCTTCTCGGCGCTAAACGGTGCAGAGAGG
TTGCAGACCGCCGCGAAGCGACAGAAATTGCACACAAACATTGAGCCGGC
GATTCAACGCACGGGCACGACCCGTACGGCGCACGTGCACGACTCCCAGC
CGCACGACAGTGAAGACTTTCGGCCGCTGTTGCAAGCGGAAATCGACGCG
GCGGTGAGAGAGAGTCGCGTAGATAGGCTGAAGGCACCCACTGTTCGCTA
CTCGTATTTTACGGATGATCGGCGGGACGAAGCAGTGGTGAGCGTAGAGA
TAAGAATTAGCGTTCCACAGCTGGCGCGTGGGGCGACAGATGGAGTGGTG
AGAGTGAGCGGGGTGACGCGGTTTGGATTTGAAGATGATGCCTCGGAAGG
GGGCGCAATCTACAAGAAGGCATACAACAGGGCGGCCAAACGCGCGGTAG
AGGCGGTGCAAGAGGTACGGCAAAAGATTGAAAAGTGGTGTGAAGAAGAG
CGGAGTATGTATCTGGAAGACCTGGTGGCGAGCTGGCAAAGAGAAGACTT
TAGCAGGCAGTGCTACAGGGCGTTTGACAAGGCAAAGCAAGTGATACTGG
GCGAAGCGGGGGGAAACCTGTATGGGGCGTCGGTTTGGCTGTATGGGTCG
GTACCGACTGGGCTGGTGCTGTGCGAATCAGACATTGACGTGTCGGTATC
GGTACCGGAGTTGTTTAGCTCGAACAAGGACGAAGACGCGCACGTGAAGA
AGGCGCGAAGCGTGGCGGTGCTCAAGTACATTGCGAACGAGATGCAAAAG
GAGCGGATGGAAAAGGTGTTTGTGGTGTCGCAGACACGGGTGCCGGTGCT
GCGGTACATGGACCGGGAGACGCAGGTGAACGTGGACGTGACGCTAAACA
AAGACCGGAGCCTTGTGTTGTCGAGACTATTGCGAAAGCACATGCAGAAG
GACAGGCGAATCTGGGAGCTGTGCATGATAGTCAAGTACTGGGCGAAACA
GCGCAAGGTGTGTGGGGTACCAGCGGGGCACATCAACTCGATGGGGTGGG
TGTTGATGGTGATCTTCTTCACACAGCACCTCGCACAGCCGCGGCTGGGG
GCGCTGTTCCGGGCGAGGAACGGCGGCGGCAACCACGCGACAATCGTACA
AGAGGCGTGGCGCGACGCGAGCGGCGGGGCGCGCGTCAACGCCCAGCGCA
CTCACGCGCTGCTCCTCGACTTCTTCCGCGTGTTTGCTGACCGCTTCGAC
TACGAGCACGAGGCCATCTCCATCAACTTGCAGAGGCGCGACGACGTGTT
ATACGTGTCAGAGGCACGTGCGTCACCTCCCGCGCTCTTCATCGAGCAGC
CGCTGCAGCGTGGTCACAATGTCGTGTCATACGTGTCGGCGAGTTCGATG
CGTCTGGTGCGCCATGAGATGCGTCGTGCCTACTACATTCTGTCGTCGCG
CCGAGAACGCTCCTGCGACGCCTTTGCTGTGCGCCACTTTGCCCATCACG
AAACTCTCTTTGCGCGCCGCTGA

Coding sequence (CDS) from alignment at tig00004433_pilon:404061..405983+

>Gchil1332.t1 ID=Gchil1332.t1|Name=Gchil1332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1923bp|location=Sequence derived from alignment at tig00004433_pilon:404061..405983+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTTAAAAACTACCTTCTACGCGCAGTCTCCGCTCAAAACATAAA
CTCCGCGCTGCTCGTCAACGCCCACAACTGGATCACCACCAAGCAGATGT
CTGTGTCTGACCCAGATCTCCACGACCTTCTCGCCCAAGCCTTCCAGGCC
ATTCACACCACTGGCGCCGCCTCTTACCATGCCAAGCGCGCCCAGCTGCT
TCGCGCCTGCTCCGATGGTCCACAACGATCCATTCTGGTGCGCGAGCATC
CACCTGTGCCCGCCACTTTCGACTCTGCCGCGCCTGCGCCCGCCAAAGCT
GCCGCGCTTGTTAGCGCTACCGCGCCCACCCCCACCGCTCCCCCTACATC
CTCGCCACCTGATGATGCCGAGCGCGAAGAAGCGCCTCGTGATAACTTGT
TGAAAAGAGTGCGTTCCAGAAGCTTCTCGGCGCTAAACGGTGCAGAGAGG
TTGCAGACCGCCGCGAAGCGACAGAAATTGCACACAAACATTGAGCCGGC
GATTCAACGCACGGGCACGACCCGTACGGCGCACGTGCACGACTCCCAGC
CGCACGACAGTGAAGACTTTCGGCCGCTGTTGCAAGCGGAAATCGACGCG
GCGGTGAGAGAGAGTCGCGTAGATAGGCTGAAGGCACCCACTGTTCGCTA
CTCGTATTTTACGGATGATCGGCGGGACGAAGCAGTGGTGAGCGTAGAGA
TAAGAATTAGCGTTCCACAGCTGGCGCGTGGGGCGACAGATGGAGTGGTG
AGAGTGAGCGGGGTGACGCGGTTTGGATTTGAAGATGATGCCTCGGAAGG
GGGCGCAATCTACAAGAAGGCATACAACAGGGCGGCCAAACGCGCGGTAG
AGGCGGTGCAAGAGGTACGGCAAAAGATTGAAAAGTGGTGTGAAGAAGAG
CGGAGTATGTATCTGGAAGACCTGGTGGCGAGCTGGCAAAGAGAAGACTT
TAGCAGGCAGTGCTACAGGGCGTTTGACAAGGCAAAGCAAGTGATACTGG
GCGAAGCGGGGGGAAACCTGTATGGGGCGTCGGTTTGGCTGTATGGGTCG
GTACCGACTGGGCTGGTGCTGTGCGAATCAGACATTGACGTGTCGGTATC
GGTACCGGAGTTGTTTAGCTCGAACAAGGACGAAGACGCGCACGTGAAGA
AGGCGCGAAGCGTGGCGGTGCTCAAGTACATTGCGAACGAGATGCAAAAG
GAGCGGATGGAAAAGGTGTTTGTGGTGTCGCAGACACGGGTGCCGGTGCT
GCGGTACATGGACCGGGAGACGCAGGTGAACGTGGACGTGACGCTAAACA
AAGACCGGAGCCTTGTGTTGTCGAGACTATTGCGAAAGCACATGCAGAAG
GACAGGCGAATCTGGGAGCTGTGCATGATAGTCAAGTACTGGGCGAAACA
GCGCAAGGTGTGTGGGGTACCAGCGGGGCACATCAACTCGATGGGGTGGG
TGTTGATGGTGATCTTCTTCACACAGCACCTCGCACAGCCGCGGCTGGGG
GCGCTGTTCCGGGCGAGGAACGGCGGCGGCAACCACGCGACAATCGTACA
AGAGGCGTGGCGCGACGCGAGCGGCGGGGCGCGCGTCAACGCCCAGCGCA
CTCACGCGCTGCTCCTCGACTTCTTCCGCGTGTTTGCTGACCGCTTCGAC
TACGAGCACGAGGCCATCTCCATCAACTTGCAGAGGCGCGACGACGTGTT
ATACGTGTCAGAGGCACGTGCGTCACCTCCCGCGCTCTTCATCGAGCAGC
CGCTGCAGCGTGGTCACAATGTCGTGTCATACGTGTCGGCGAGTTCGATG
CGTCTGGTGCGCCATGAGATGCGTCGTGCCTACTACATTCTGTCGTCGCG
CCGAGAACGCTCCTGCGACGCCTTTGCTGTGCGCCACTTTGCCCATCACG
AAACTCTCTTTGCGCGCCGCTGA