Gchil1341.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1341.t1
Unique NameGchil1341.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:726405..728573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog870187.Thini_1498
PFAMsASH,An_peroxidase,HCBP_related,HemolysinCabind
Max annot lvl1236|Gammaproteobacteria
Evalue1.86e-32
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,1RZD3@1236|Gammaproteobacteria
DescriptionAnimal haem peroxidase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1341Gchil1341Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 726405..728573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1341.t1Gchil1341.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 726405..728573 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1341.t1.stop1Gchil1341.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 726405..726407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1341.t1.CDS1Gchil1341.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 726405..726466 -
Gchil1341.t1.CDS2Gchil1341.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 727220..727637 -
Gchil1341.t1.CDS3Gchil1341.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 727908..728573 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1341.t1.exon1Gchil1341.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 726405..726466 -
Gchil1341.t1.exon2Gchil1341.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 727220..727637 -
Gchil1341.t1.exon3Gchil1341.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 727908..728573 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1341.t1.intron1Gchil1341.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 726467..727219 -
Gchil1341.t1.intron2Gchil1341.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 727638..727907 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1341.t1.start1Gchil1341.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 728571..728573 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1341.t1 ID=Gchil1341.t1|Name=Gchil1341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=382bp
MPCIRHFNFLPTSPLHMILTMYIHLVVATLMLSLSEAQQPEAVGQGSILL
QPLPPAKRPDTLGVAEECAAISIRTLSGRCTSAVNPAFGEARRPQYSYFN
VCTAVPHGARLPSPRHISNIVSNQDGDTVNSMRLNEMFTFFGQFIDHDFA
LSPLDGNSNGKFYIEVPEDDPVLSVPELHFIRSERGFVEEGSSIQRPITI
LSSALDLSTVYGVDVMRNQFLRIVYQEWLPAVLGTIPLRTYTGYDPNVDA
TVSIEFTTAGFRLGHTLVGTDVTRIGSNRRVLKPLPAERMFFLPSKFFTD
HEMEDFIRGASLTFAQELDEKVVSILRNFLFDNVAEEEGFDLLSLNLQRS
RDHNVASFNKLHLVEESLKIAQRNIPNAIIH*
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spliced messenger RNA

>Gchil1341.t1 ID=Gchil1341.t1|Name=Gchil1341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004433_pilon:726405..728573- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTGCATTCGTCATTTTAACTTCCTTCCTACATCCCCACTTCACAT
GATTCTTACCATGTACATTCACCTCGTCGTCGCCACATTAATGCTTTCGC
TTTCCGAGGCGCAACAGCCCGAAGCCGTCGGTCAGGGATCCATTCTACTC
CAACCGTTGCCACCCGCTAAAAGACCCGACACGCTTGGAGTCGCTGAAGA
GTGCGCTGCCATATCAATTCGCACCCTGTCCGGCCGCTGCACCTCTGCCG
TCAACCCTGCCTTCGGCGAAGCTCGCCGCCCCCAGTACAGCTACTTCAAT
GTTTGCACTGCTGTGCCACATGGTGCTCGCCTCCCATCTCCACGTCATAT
CTCCAACATCGTCAGCAATCAGGATGGAGATACCGTCAATTCCATGCGTC
TCAACGAGATGTTCACTTTTTTCGGTCAATTCATCGATCATGATTTCGCG
CTCAGTCCGCTTGACGGGAACTCCAATGGAAAGTTTTACATTGAGGTACC
CGAGGATGATCCAGTCCTATCCGTCCCTGAGCTGCACTTCATTCGCTCGG
AGCGTGGGTTTGTTGAAGAAGGATCTTCTATTCAGCGTCCTATTACCATT
CTCTCCTCCGCGTTGGATCTATCTACAGTTTACGGTGTCGACGTGATGCG
AAACCAATTCCTACGGATAGTATACCAAGAATGGCTTCCAGCCGTCCTCG
GAACTATCCCGCTGCGTACCTATACCGGTTACGATCCCAATGTTGATGCT
ACTGTTAGCATCGAGTTCACCACTGCTGGCTTCCGTCTCGGCCATACTCT
TGTCGGAACTGACGTGACCAGAATCGGTTCAAATAGAAGAGTGCTCAAAC
CCCTTCCCGCCGAGAGGATGTTCTTCCTTCCAAGCAAATTCTTCACTGAC
CACGAGATGGAAGACTTTATCCGTGGTGCTTCCCTCACCTTTGCTCAAGA
GCTTGACGAAAAGGTCGTATCGATCCTGAGAAATTTCTTGTTCGACAATG
TCGCCGAGGAAGAAGGCTTCGATCTTCTTTCCCTCAACTTGCAACGTTCT
CGCGATCACAACGTCGCAAGCTTCAATAAGTTGCATCTTGTCGAGGAATC
CCTGAAGATTGCACAACGTAATATCCCTAATGCCATAATTCATTGA
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protein sequence of Gchil1341.t1

>Gchil1341.t1 ID=Gchil1341.t1|Name=Gchil1341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=382bp
MPCIRHFNFLPTSPLHMILTMYIHLVVATLMLSLSEAQQPEAVGQGSILL
QPLPPAKRPDTLGVAEECAAISIRTLSGRCTSAVNPAFGEARRPQYSYFN
VCTAVPHGARLPSPRHISNIVSNQDGDTVNSMRLNEMFTFFGQFIDHDFA
LSPLDGNSNGKFYIEVPEDDPVLSVPELHFIRSERGFVEEGSSIQRPITI
LSSALDLSTVYGVDVMRNQFLRIVYQEWLPAVLGTIPLRTYTGYDPNVDA
TVSIEFTTAGFRLGHTLVGTDVTRIGSNRRVLKPLPAERMFFLPSKFFTD
HEMEDFIRGASLTFAQELDEKVVSILRNFLFDNVAEEEGFDLLSLNLQRS
RDHNVASFNKLHLVEESLKIAQRNIPNAIIH*
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mRNA from alignment at tig00004433_pilon:726405..728573-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1341.t1 ID=Gchil1341.t1|Name=Gchil1341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2169bp|location=Sequence derived from alignment at tig00004433_pilon:726405..728573- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTGCATTCGTCATTTTAACTTCCTTCCTACATCCCCACTTCACAT
GATTCTTACCATGTACATTCACCTCGTCGTCGCCACATTAATGCTTTCGC
TTTCCGAGGCGCAACAGCCCGAAGCCGTCGGTCAGGGATCCATTCTACTC
CAACCGTTGCCACCCGCTAAAAGACCCGACACGCTTGGAGTCGCTGAAGA
GTGCGCTGCCATATCAATTCGCACCCTGTCCGGCCGCTGCACCTCTGCCG
TCAACCCTGCCTTCGGCGAAGCTCGCCGCCCCCAGTACAGCTACTTCAAT
GTTTGCACTGCTGTGCCACATGGTGCTCGCCTCCCATCTCCACGTCATAT
CTCCAACATCGTCAGCAATCAGGATGGAGATACCGTCAATTCCATGCGTC
TCAACGAGATGTTCACTTTTTTCGGTCAATTCATCGATCATGATTTCGCG
CTCAGTCCGCTTGACGGGAACTCCAATGGAAAGTTTTACATTGAGGTACC
CGAGGATGATCCAGTCCTATCCGTCCCTGAGCTGCACTTCATTCGCTCGG
AGCGTGGGTTTGTTGAAGAAGGATCTTCTATTCAGCGTCCTATTACCATT
CTCTCCTCCGCGTTGGATCTATCTACAGTTTACGGTGTCGACGTGATGCG
AAACCAATTCCTACGGGTACCTAACTCATGCAAGCTGAGGGTATCTGGAA
ACGATCTACTACCATTGAACACCGCAGCGTTCGTCAATTCTCCAAACACA
TCGCCGGCGTTCTTCATTGCTGGTGATACACGTGTCAACGAAACTCCGAT
GCTCACCGTCATGCATACAATCTGGGTGAGAGAACACAACCGCCTATGCG
GCCTGATCGAGGAGGTTCTCAGCGAGTTCGCACCAGAATTTCAGTATGAG
ACAGTTCGTGCCATTAATATTGCTCAGTTCCAAAAGATAGTATACCAAGA
ATGGCTTCCAGCCGTCCTCGGAACTATCCCGCTGCGTACCTATACCGGTT
ACGATCCCAATGTTGATGCTACTGTTAGCATCGAGTTCACCACTGCTGGC
TTCCGTCTCGGCCATACTCTTGTCGGAACTGACGTGACCAGAATCGGTTC
AAATAGAAGAGTGCTCAAACCCCTTCCCGCCGAGAGGATGTTCTTCCTTC
CAAGCAAATTCTTCACTGACCACGAGATGGAAGACTTTATCCGTGGTGCT
TCCCTCACCTTTGCTCAAGAGCTTGACGAAAAGGTCGTATCGATCCTGAG
AAATTTCTTGTTCGACAATGTCGCCGAGGAAGAAGGCTTCGATCTTCTTT
CCCTCAACTTGCAACGTTCTCGCGATCACAACGTCGCAAGCTTCAATAAG
TTGCGTACATTCTTCCTTGGGACTCCTGTTGCGTCTTTCGACGAAATCTC
TAGTAACCCGACCACCGCTAGGAACCTTCAAAAGGCATATGGAGACGTCA
ACGAGGTAGAGGCATGGATTGGCCTGATGGCCGAGGACAAGGTTCCTGGA
TCTGTTGTGGGTCCAACATTGGGAGCTCTGCTCAAGGCTGAATTTGAACG
GCTACGTGACGGAGATCAATTTTTCTACTTACTGAGAAACCAAATTCCGA
ATCTTGTGTTCGAAAAGATTCCTTCAATTGAAAGTGATATTTTTGGAGCA
TCCAGCCTTTTCAATCGCATCCTCGTGAGAACAACGTCAGTCACCACCGC
ATTTCTCAAGGACACGGCAAATGCCTTCTGTGTGGACGGAAAATGTGGTT
AGGTGTTCAAGAATCAAACTTTCTCTCGTGAGGTGAAGGAACGTCTCAGG
AGGTAAGTAAGGTACAGATTAAAAAAGTTAAAGAAAAATATGCTTGTCGA
ACTCGGACCAAGTTCCTTTTTTACCCGATGCTACCACATAGGTCCAGCTA
CAATCCAGCAAAGAATGGAATGGTAGAGGCTACAAAGAACTCCACAAGAA
ACGAATCTTTACTTGACCGTGTTATCTGGTTGTTGGTGCGCTGTCCTGCG
CGAGATATGCTGCTCGCGCACGTGTGCGCTGCTCCGTCATTCGCGACTGT
ACGCGTCGCTCATTGGGCACCGAAAAACCTAAGCCCCATTCGAAGTTTGT
GCGACAGATCTTGTCGAGGAATCCCTGAAGATTGCACAACGTAATATCCC
TAATGCCATAATTCATTGA
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Coding sequence (CDS) from alignment at tig00004433_pilon:726405..728573-

>Gchil1341.t1 ID=Gchil1341.t1|Name=Gchil1341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00004433_pilon:726405..728573- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTGCATTCGTCATTTTAACTTCCTTCCTACATCCCCACTTCACAT
GATTCTTACCATGTACATTCACCTCGTCGTCGCCACATTAATGCTTTCGC
TTTCCGAGGCGCAACAGCCCGAAGCCGTCGGTCAGGGATCCATTCTACTC
CAACCGTTGCCACCCGCTAAAAGACCCGACACGCTTGGAGTCGCTGAAGA
GTGCGCTGCCATATCAATTCGCACCCTGTCCGGCCGCTGCACCTCTGCCG
TCAACCCTGCCTTCGGCGAAGCTCGCCGCCCCCAGTACAGCTACTTCAAT
GTTTGCACTGCTGTGCCACATGGTGCTCGCCTCCCATCTCCACGTCATAT
CTCCAACATCGTCAGCAATCAGGATGGAGATACCGTCAATTCCATGCGTC
TCAACGAGATGTTCACTTTTTTCGGTCAATTCATCGATCATGATTTCGCG
CTCAGTCCGCTTGACGGGAACTCCAATGGAAAGTTTTACATTGAGGTACC
CGAGGATGATCCAGTCCTATCCGTCCCTGAGCTGCACTTCATTCGCTCGG
AGCGTGGGTTTGTTGAAGAAGGATCTTCTATTCAGCGTCCTATTACCATT
CTCTCCTCCGCGTTGGATCTATCTACAGTTTACGGTGTCGACGTGATGCG
AAACCAATTCCTACGGATAGTATACCAAGAATGGCTTCCAGCCGTCCTCG
GAACTATCCCGCTGCGTACCTATACCGGTTACGATCCCAATGTTGATGCT
ACTGTTAGCATCGAGTTCACCACTGCTGGCTTCCGTCTCGGCCATACTCT
TGTCGGAACTGACGTGACCAGAATCGGTTCAAATAGAAGAGTGCTCAAAC
CCCTTCCCGCCGAGAGGATGTTCTTCCTTCCAAGCAAATTCTTCACTGAC
CACGAGATGGAAGACTTTATCCGTGGTGCTTCCCTCACCTTTGCTCAAGA
GCTTGACGAAAAGGTCGTATCGATCCTGAGAAATTTCTTGTTCGACAATG
TCGCCGAGGAAGAAGGCTTCGATCTTCTTTCCCTCAACTTGCAACGTTCT
CGCGATCACAACGTCGCAAGCTTCAATAAGTTGCATCTTGTCGAGGAATC
CCTGAAGATTGCACAACGTAATATCCCTAATGCCATAATTCATTGA
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