Gchil1333.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1333.t1
Unique Name	Gchil1333.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	210

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:406199..406828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008454201.1
PFAMs	Thymidylate_kin
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00002
KEGG ko	ko:K00943
KEGG Reaction	R02094,R02098
KEGG Pathway	ko00240,ko01100,map00240,map01100
KEGG Module	M00053
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050145,GO:0055086,GO:0061458,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	1.35e-58
EggNOG OGs	COG0125@1\|root,KOG3327@2759\|Eukaryota,37JUX@33090\|Viridiplantae,3G8A8@35493\|Streptophyta,4JDSG@91835\|fabids
EC	2.7.4.9
Description	Thymidylate
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1333	Gchil1333	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 406199..406828 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1333.t1.start1	Gchil1333.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 406199..406201 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1333.t1.CDS1	Gchil1333.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 406199..406828 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1333.t1.exon1	Gchil1333.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 406199..406828 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1333.t1.stop1	Gchil1333.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 406826..406828 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1333.t1	Gchil1333.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 406199..406828 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:406199..406828+
coding sequence from alignment at tig00004433_pilon:406199..406828+

mRNA sequence

>Gchil1333.t1 ID=Gchil1333.t1|Name=Gchil1333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=210bp
MRGALIVFEGADRSGKSTQARLFTTALQKAGVTVAEHAPWSFPDRTTPTG
RIINSYLTNAADVDHHALHLLFSANRWEKVSRIRDALTRGETVVLDRYAY
SGVAYSVANGLPLQWTKCADQGLPAPDLVLYLQLSAGAAAKRAGFGSERY
ENNHMQSAVVRAFDLLRTKHWLIIDADADQHTVLHTILDRAMPIVAQATN
RDCIQTLWN*

spliced messenger RNA

>Gchil1333.t1 ID=Gchil1333.t1|Name=Gchil1333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004433_pilon:406199..406828+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGCGCCCTCATCGTCTTCGAGGGGGCCGACCGCAGCGGAAAGTC
CACTCAGGCGCGCCTTTTCACCACAGCGCTGCAAAAAGCCGGCGTCACCG
TCGCTGAACACGCCCCGTGGTCTTTCCCGGATCGCACCACCCCCACCGGC
CGCATCATCAACTCCTACCTCACCAACGCCGCTGACGTCGACCACCACGC
CCTGCACCTGCTTTTCTCCGCAAACCGCTGGGAGAAGGTCTCGCGCATCC
GCGACGCCCTCACGCGAGGCGAAACTGTCGTTCTCGATCGCTATGCCTAC
TCCGGCGTCGCCTACTCCGTCGCCAACGGCCTTCCCTTGCAGTGGACCAA
ATGCGCCGATCAGGGGTTACCGGCGCCTGATCTCGTCCTGTATCTGCAGC
TCAGCGCTGGCGCCGCTGCCAAACGCGCCGGTTTTGGAAGCGAGCGCTAT
GAAAACAATCACATGCAAAGCGCCGTAGTGCGCGCTTTCGACTTGCTTCG
CACCAAACACTGGCTGATCATAGACGCCGACGCCGACCAACACACCGTGC
TGCACACAATTCTGGACAGAGCCATGCCCATCGTTGCGCAGGCCACAAAT
CGCGATTGCATCCAAACACTGTGGAACTAG

protein sequence of Gchil1333.t1

>Gchil1333.t1 ID=Gchil1333.t1|Name=Gchil1333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MRGALIVFEGADRSGKSTQARLFTTALQKAGVTVAEHAPWSFPDRTTPTG
RIINSYLTNAADVDHHALHLLFSANRWEKVSRIRDALTRGETVVLDRYAY
SGVAYSVANGLPLQWTKCADQGLPAPDLVLYLQLSAGAAAKRAGFGSERY
ENNHMQSAVVRAFDLLRTKHWLIIDADADQHTVLHTILDRAMPIVAQATN
RDCIQTLWN*

mRNA from alignment at tig00004433_pilon:406199..406828+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1333.t1 ID=Gchil1333.t1|Name=Gchil1333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004433_pilon:406199..406828+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGGCGCCCTCATCGTCTTCGAGGGGGCCGACCGCAGCGGAAAGTC
CACTCAGGCGCGCCTTTTCACCACAGCGCTGCAAAAAGCCGGCGTCACCG
TCGCTGAACACGCCCCGTGGTCTTTCCCGGATCGCACCACCCCCACCGGC
CGCATCATCAACTCCTACCTCACCAACGCCGCTGACGTCGACCACCACGC
CCTGCACCTGCTTTTCTCCGCAAACCGCTGGGAGAAGGTCTCGCGCATCC
GCGACGCCCTCACGCGAGGCGAAACTGTCGTTCTCGATCGCTATGCCTAC
TCCGGCGTCGCCTACTCCGTCGCCAACGGCCTTCCCTTGCAGTGGACCAA
ATGCGCCGATCAGGGGTTACCGGCGCCTGATCTCGTCCTGTATCTGCAGC
TCAGCGCTGGCGCCGCTGCCAAACGCGCCGGTTTTGGAAGCGAGCGCTAT
GAAAACAATCACATGCAAAGCGCCGTAGTGCGCGCTTTCGACTTGCTTCG
CACCAAACACTGGCTGATCATAGACGCCGACGCCGACCAACACACCGTGC
TGCACACAATTCTGGACAGAGCCATGCCCATCGTTGCGCAGGCCACAAAT
CGCGATTGCATCCAAACACTGTGGAACTAG

Coding sequence (CDS) from alignment at tig00004433_pilon:406199..406828+

>Gchil1333.t1 ID=Gchil1333.t1|Name=Gchil1333.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00004433_pilon:406199..406828+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGGCGCCCTCATCGTCTTCGAGGGGGCCGACCGCAGCGGAAAGTC
CACTCAGGCGCGCCTTTTCACCACAGCGCTGCAAAAAGCCGGCGTCACCG
TCGCTGAACACGCCCCGTGGTCTTTCCCGGATCGCACCACCCCCACCGGC
CGCATCATCAACTCCTACCTCACCAACGCCGCTGACGTCGACCACCACGC
CCTGCACCTGCTTTTCTCCGCAAACCGCTGGGAGAAGGTCTCGCGCATCC
GCGACGCCCTCACGCGAGGCGAAACTGTCGTTCTCGATCGCTATGCCTAC
TCCGGCGTCGCCTACTCCGTCGCCAACGGCCTTCCCTTGCAGTGGACCAA
ATGCGCCGATCAGGGGTTACCGGCGCCTGATCTCGTCCTGTATCTGCAGC
TCAGCGCTGGCGCCGCTGCCAAACGCGCCGGTTTTGGAAGCGAGCGCTAT
GAAAACAATCACATGCAAAGCGCCGTAGTGCGCGCTTTCGACTTGCTTCG
CACCAAACACTGGCTGATCATAGACGCCGACGCCGACCAACACACCGTGC
TGCACACAATTCTGGACAGAGCCATGCCCATCGTTGCGCAGGCCACAAAT
CGCGATTGCATCCAAACACTGTGGAACTAG