Gchil1345.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1345.t1
Unique NameGchil1345.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:784757..786080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FYF7
PFAMsDynamin_M,Dynamin_N,GED
Max annot lvl2759|Eukaryota
KEGG koko:K14754,ko:K17065
KEGG Pathwayko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
GOsGO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
Evalue2.57e-52
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
EC3.6.5.5
Descriptionmitochondrial fission
COG categoryI
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1345Gchil1345Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 784757..786080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1345.t1Gchil1345.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 784757..786080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1345.t1.start1Gchil1345.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 784757..784759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1345.t1.CDS1Gchil1345.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 784757..785982 +
Gchil1345.t1.CDS2Gchil1345.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 786062..786080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1345.t1.exon1Gchil1345.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 784757..785982 +
Gchil1345.t1.exon2Gchil1345.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 786062..786080 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1345.t1.intron1Gchil1345.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 785983..786061 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1345.t1.stop1Gchil1345.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 786078..786080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1345.t1 ID=Gchil1345.t1|Name=Gchil1345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=415bp
MGTTPISETIDDVFERRLGKKLSLIEELRTDLGNEGIQCPGVLVVGAQSA
GKSSVLERLTSIRFPRAENTCTRVPTIVQLQTDPHIATATALISTNADFS
EAKKCTDMKSLEEAILDISSSITGNGTPIADLPIHIRYTRKKGPVMTLID
LPGITHVDVDGHENFDIHEVTSSMVNKYVMNENMVVLVVIPANDDFGNAE
ALRIAQSHDKDGERTIGVVSKCDLVPPNSDILEKIRMSRPSDVKLALGFI
AVRNKSIGEDEKDIENIESKLFATHDLLKHLKDDERGYSALTKKIVDLQN
ERVDGFIPKAMGLVQKRIRALQMERRKFGHSPNTAAEKRMVLTGLLCEVQ
ERIGSLIRAVNIPEKKLNVSARSMEFCQTFSRSITEQLPNVLSQEFEDEL
HGYVEESTGIKRRP*
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spliced messenger RNA

>Gchil1345.t1 ID=Gchil1345.t1|Name=Gchil1345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00004433_pilon:784757..786080+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAACCACTCCAATTTCTGAAACCATAGATGATGTCTTCGAACGCCG
TCTCGGCAAGAAGCTGTCCCTTATCGAAGAGCTCCGAACTGATCTTGGAA
ACGAAGGTATCCAGTGCCCGGGGGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAAAGACTCACCTCAATTCGCTTCCCGCGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTGCAACTTCAAACAGACC
CGCACATAGCAACGGCTACAGCTTTAATTTCGACGAATGCCGATTTTTCG
GAAGCGAAAAAGTGCACGGATATGAAATCTCTAGAGGAAGCCATTTTGGA
TATTTCCTCTTCTATTACTGGAAACGGTACTCCTATTGCTGATTTGCCTA
TTCACATTCGCTACACAAGGAAAAAAGGCCCTGTAATGACCTTGATTGAC
TTGCCGGGCATCACGCATGTCGATGTGGATGGCCATGAAAATTTCGATAT
TCATGAGGTAACTTCATCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTGGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGTATTGCTCAATCACACGACAAGGACGGAGAACGAACCATTGG
TGTAGTGTCAAAGTGTGATCTCGTACCGCCTAACTCTGATATCCTGGAGA
AGATCCGCATGAGTCGACCGAGCGACGTAAAACTCGCCCTGGGCTTCATT
GCAGTGCGAAACAAAAGCATCGGAGAAGACGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGATTTACTGAAGCATTTAAAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAAT
GAACGCGTGGATGGATTCATACCGAAGGCAATGGGATTAGTTCAGAAGCG
GATTAGAGCCTTACAAATGGAGAGACGGAAGTTTGGACATAGTCCGAATA
CTGCTGCTGAGAAGCGAATGGTTTTGACAGGGCTGCTGTGTGAAGTCCAA
GAGCGCATTGGTAGCTTGATTCGAGCAGTGAACATTCCAGAAAAGAAGCT
GAACGTATCAGCTCGATCCATGGAGTTTTGCCAAACATTTTCTCGTTCCA
TTACAGAACAATTGCCTAACGTTCTGAGCCAGGAATTTGAGGACGAATTA
CATGGTTACGTTGAAGAATCCACTGGgatcaaacggAGACcttaa
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protein sequence of Gchil1345.t1

>Gchil1345.t1 ID=Gchil1345.t1|Name=Gchil1345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=415bp
MGTTPISETIDDVFERRLGKKLSLIEELRTDLGNEGIQCPGVLVVGAQSA
GKSSVLERLTSIRFPRAENTCTRVPTIVQLQTDPHIATATALISTNADFS
EAKKCTDMKSLEEAILDISSSITGNGTPIADLPIHIRYTRKKGPVMTLID
LPGITHVDVDGHENFDIHEVTSSMVNKYVMNENMVVLVVIPANDDFGNAE
ALRIAQSHDKDGERTIGVVSKCDLVPPNSDILEKIRMSRPSDVKLALGFI
AVRNKSIGEDEKDIENIESKLFATHDLLKHLKDDERGYSALTKKIVDLQN
ERVDGFIPKAMGLVQKRIRALQMERRKFGHSPNTAAEKRMVLTGLLCEVQ
ERIGSLIRAVNIPEKKLNVSARSMEFCQTFSRSITEQLPNVLSQEFEDEL
HGYVEESTGIKRRP*
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mRNA from alignment at tig00004433_pilon:784757..786080+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1345.t1 ID=Gchil1345.t1|Name=Gchil1345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1324bp|location=Sequence derived from alignment at tig00004433_pilon:784757..786080+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAACCACTCCAATTTCTGAAACCATAGATGATGTCTTCGAACGCCG
TCTCGGCAAGAAGCTGTCCCTTATCGAAGAGCTCCGAACTGATCTTGGAA
ACGAAGGTATCCAGTGCCCGGGGGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAAAGACTCACCTCAATTCGCTTCCCGCGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTGCAACTTCAAACAGACC
CGCACATAGCAACGGCTACAGCTTTAATTTCGACGAATGCCGATTTTTCG
GAAGCGAAAAAGTGCACGGATATGAAATCTCTAGAGGAAGCCATTTTGGA
TATTTCCTCTTCTATTACTGGAAACGGTACTCCTATTGCTGATTTGCCTA
TTCACATTCGCTACACAAGGAAAAAAGGCCCTGTAATGACCTTGATTGAC
TTGCCGGGCATCACGCATGTCGATGTGGATGGCCATGAAAATTTCGATAT
TCATGAGGTAACTTCATCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTGGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGTATTGCTCAATCACACGACAAGGACGGAGAACGAACCATTGG
TGTAGTGTCAAAGTGTGATCTCGTACCGCCTAACTCTGATATCCTGGAGA
AGATCCGCATGAGTCGACCGAGCGACGTAAAACTCGCCCTGGGCTTCATT
GCAGTGCGAAACAAAAGCATCGGAGAAGACGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGATTTACTGAAGCATTTAAAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAAT
GAACGCGTGGATGGATTCATACCGAAGGCAATGGGATTAGTTCAGAAGCG
GATTAGAGCCTTACAAATGGAGAGACGGAAGTTTGGACATAGTCCGAATA
CTGCTGCTGAGAAGCGAATGGTTTTGACAGGGCTGCTGTGTGAAGTCCAA
GAGCGCATTGGTAGCTTGATTCGAGCAGTGAACATTCCAGAAAAGAAGCT
GAACGTATCAGCTCGATCCATGGAGTTTTGCCAAACATTTTCTCGTTCCA
TTACAGAACAATTGCCTAACGTTCTGAGCCAGGAATTTGAGGACGAATTA
CATGGTTACGTTGAAGAATCCACTGGGTACGCATTACCAAATTTTGtcag
cgattctgttttccggaaagtgatttgcggaatgctgttggatactttgg
ttcaggatcaaacggAGACcttaa
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Coding sequence (CDS) from alignment at tig00004433_pilon:784757..786080+

>Gchil1345.t1 ID=Gchil1345.t1|Name=Gchil1345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00004433_pilon:784757..786080+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAACCACTCCAATTTCTGAAACCATAGATGATGTCTTCGAACGCCG
TCTCGGCAAGAAGCTGTCCCTTATCGAAGAGCTCCGAACTGATCTTGGAA
ACGAAGGTATCCAGTGCCCGGGGGTACTCGTGGTCGGCGCCCAATCAGCC
GGCAAGTCTTCTGTGCTGGAAAGACTCACCTCAATTCGCTTCCCGCGAGC
TGAAAACACCTGCACAAGAGTCCCTACCATCGTGCAACTTCAAACAGACC
CGCACATAGCAACGGCTACAGCTTTAATTTCGACGAATGCCGATTTTTCG
GAAGCGAAAAAGTGCACGGATATGAAATCTCTAGAGGAAGCCATTTTGGA
TATTTCCTCTTCTATTACTGGAAACGGTACTCCTATTGCTGATTTGCCTA
TTCACATTCGCTACACAAGGAAAAAAGGCCCTGTAATGACCTTGATTGAC
TTGCCGGGCATCACGCATGTCGATGTGGATGGCCATGAAAATTTCGATAT
TCATGAGGTAACTTCATCAATGGTGAACAAGTATGTCATGAATGAGAACA
TGGTTGTGTTGGTCGTCATTCCAGCGAACGATGACTTTGGAAACGCAGAA
GCACTTCGTATTGCTCAATCACACGACAAGGACGGAGAACGAACCATTGG
TGTAGTGTCAAAGTGTGATCTCGTACCGCCTAACTCTGATATCCTGGAGA
AGATCCGCATGAGTCGACCGAGCGACGTAAAACTCGCCCTGGGCTTCATT
GCAGTGCGAAACAAAAGCATCGGAGAAGACGAAAAGGACATTGAAAATAT
CGAATCGAAGCTCTTCGCTACACATGATTTACTGAAGCATTTAAAGGATG
ACGAAAGAGGATACTCAGCGCTAACAAAGAAAATTGTTGACCTTCAAAAT
GAACGCGTGGATGGATTCATACCGAAGGCAATGGGATTAGTTCAGAAGCG
GATTAGAGCCTTACAAATGGAGAGACGGAAGTTTGGACATAGTCCGAATA
CTGCTGCTGAGAAGCGAATGGTTTTGACAGGGCTGCTGTGTGAAGTCCAA
GAGCGCATTGGTAGCTTGATTCGAGCAGTGAACATTCCAGAAAAGAAGCT
GAACGTATCAGCTCGATCCATGGAGTTTTGCCAAACATTTTCTCGTTCCA
TTACAGAACAATTGCCTAACGTTCTGAGCCAGGAATTTGAGGACGAATTA
CATGGTTACGTTGAAGAATCCACTGGgatcaaacggAGACcttaa
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