Gchil1348.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1348.t1
Unique NameGchil1348.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:851470..852333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5722.XP_001324858.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K02218
KEGG Pathwayko04011,ko04392,map04011,map04392
Evalue3.86e-39
EggNOG OGsKOG1164@1|root,KOG1164@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1348Gchil1348Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 851470..852333 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1348.t1.stop1Gchil1348.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 851470..851472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1348.t1.CDS1Gchil1348.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 851470..852333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1348.t1.exon1Gchil1348.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 851470..852333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1348.t1.start1Gchil1348.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 852331..852333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1348.t1Gchil1348.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 851470..852333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1348.t1 ID=Gchil1348.t1|Name=Gchil1348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=288bp
MGLHSNDSIDNTYYIRSKIDSGGEGSVYAAHDGDGRTYAVKASRGSTSLN
REYRAYKRLGCTKHNREFLPRIYHFSTHRGHKVMVMNRFETSLDDLRRKN
GGSFSMPTVLKIGIKLVRMLQYIHSKGVLHGDVKPSNIMLSKQQGRLARF
YLVDFGCSHSYVSGHGSQHISDSIYSFYGTHLFASPRAHAEKVQSRRDDL
KSLAYVLVYLVKGTLPWKRLGVSDMGHMKNDISIESLCSGTWGLKEYATQ
VWKLSFAEKPDYASLMTILDSALIRLKRTNRIRYDWE*
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spliced messenger RNA

>Gchil1348.t1 ID=Gchil1348.t1|Name=Gchil1348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004433_pilon:851470..852333- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTACACTCAAATGATTCTATCGATAACACATACTACATTCGGTC
AAAGATCGACAGCGGAGGTGAAGGCTCTGTATATGCCGCCCATGATGGAG
ACGGTCGGACGTACGCCGTGAAAGCAAGTCGAGGCTCAACATCTCTAAAC
CGTGAGTATCGAGCTTACAAACGGCTTGGATGTACAAAGCACAACAGAGA
GTTTCTTCCCCGAATATATCACTTCTCAACACACAGAGGACACAAAGTAA
TGGTTATGAACCGCTTCGAAACATCACTTGATGATTTGAGACGGAAGAAT
GGCGGTTCGTTTTCGATGCCAACCGTGCTCAAGATCGGTATCAAACTTGT
GCGTATGTTGCAGTATATCCATTCAAAGGGCGTCCTTCATGGTGACGTGA
AGCCTTCCAACATTATGCTATCAAAACAGCAAGGTCGACTTGCCAGGTTT
TATCTAGTGGACTTTGGTTGCTCTCACAGCTATGTTAGTGGCCATGGTTC
CCAACACATAAGCGATTCTATATACAGTTTCTATGGCACCCACTTGTTTG
CCTCGCCGCGAGCACATGCGGAGAAAGTTCAGTCGCGAAGAGATGATTTA
AAGTCACTAGCATACGTATTGGTTTATCTTGTGAAGGGCACTCTTCCCTG
GAAACGGCTGGGTGTCAGTGACATGGGGCATATGAAGAATGATATATCTA
TAGAATCTCTATGTTCCGGGACTTGGGGCCTCAAAGAGTACGCAACACAA
GTTTGGAAGCTCTCTTTTGCTGAGAAACCTGATTATGCTTCGCTAATGAC
AATTCTAGATTCAGCCCTCATTCGTTTAAAGCGCACCAATCGCATTCGCT
ATGATTGGGAGTAG
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protein sequence of Gchil1348.t1

>Gchil1348.t1 ID=Gchil1348.t1|Name=Gchil1348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=288bp
MGLHSNDSIDNTYYIRSKIDSGGEGSVYAAHDGDGRTYAVKASRGSTSLN
REYRAYKRLGCTKHNREFLPRIYHFSTHRGHKVMVMNRFETSLDDLRRKN
GGSFSMPTVLKIGIKLVRMLQYIHSKGVLHGDVKPSNIMLSKQQGRLARF
YLVDFGCSHSYVSGHGSQHISDSIYSFYGTHLFASPRAHAEKVQSRRDDL
KSLAYVLVYLVKGTLPWKRLGVSDMGHMKNDISIESLCSGTWGLKEYATQ
VWKLSFAEKPDYASLMTILDSALIRLKRTNRIRYDWE*
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mRNA from alignment at tig00004433_pilon:851470..852333-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1348.t1 ID=Gchil1348.t1|Name=Gchil1348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004433_pilon:851470..852333- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCTACACTCAAATGATTCTATCGATAACACATACTACATTCGGTC
AAAGATCGACAGCGGAGGTGAAGGCTCTGTATATGCCGCCCATGATGGAG
ACGGTCGGACGTACGCCGTGAAAGCAAGTCGAGGCTCAACATCTCTAAAC
CGTGAGTATCGAGCTTACAAACGGCTTGGATGTACAAAGCACAACAGAGA
GTTTCTTCCCCGAATATATCACTTCTCAACACACAGAGGACACAAAGTAA
TGGTTATGAACCGCTTCGAAACATCACTTGATGATTTGAGACGGAAGAAT
GGCGGTTCGTTTTCGATGCCAACCGTGCTCAAGATCGGTATCAAACTTGT
GCGTATGTTGCAGTATATCCATTCAAAGGGCGTCCTTCATGGTGACGTGA
AGCCTTCCAACATTATGCTATCAAAACAGCAAGGTCGACTTGCCAGGTTT
TATCTAGTGGACTTTGGTTGCTCTCACAGCTATGTTAGTGGCCATGGTTC
CCAACACATAAGCGATTCTATATACAGTTTCTATGGCACCCACTTGTTTG
CCTCGCCGCGAGCACATGCGGAGAAAGTTCAGTCGCGAAGAGATGATTTA
AAGTCACTAGCATACGTATTGGTTTATCTTGTGAAGGGCACTCTTCCCTG
GAAACGGCTGGGTGTCAGTGACATGGGGCATATGAAGAATGATATATCTA
TAGAATCTCTATGTTCCGGGACTTGGGGCCTCAAAGAGTACGCAACACAA
GTTTGGAAGCTCTCTTTTGCTGAGAAACCTGATTATGCTTCGCTAATGAC
AATTCTAGATTCAGCCCTCATTCGTTTAAAGCGCACCAATCGCATTCGCT
ATGATTGGGAGTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:851470..852333-

>Gchil1348.t1 ID=Gchil1348.t1|Name=Gchil1348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00004433_pilon:851470..852333- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCTACACTCAAATGATTCTATCGATAACACATACTACATTCGGTC
AAAGATCGACAGCGGAGGTGAAGGCTCTGTATATGCCGCCCATGATGGAG
ACGGTCGGACGTACGCCGTGAAAGCAAGTCGAGGCTCAACATCTCTAAAC
CGTGAGTATCGAGCTTACAAACGGCTTGGATGTACAAAGCACAACAGAGA
GTTTCTTCCCCGAATATATCACTTCTCAACACACAGAGGACACAAAGTAA
TGGTTATGAACCGCTTCGAAACATCACTTGATGATTTGAGACGGAAGAAT
GGCGGTTCGTTTTCGATGCCAACCGTGCTCAAGATCGGTATCAAACTTGT
GCGTATGTTGCAGTATATCCATTCAAAGGGCGTCCTTCATGGTGACGTGA
AGCCTTCCAACATTATGCTATCAAAACAGCAAGGTCGACTTGCCAGGTTT
TATCTAGTGGACTTTGGTTGCTCTCACAGCTATGTTAGTGGCCATGGTTC
CCAACACATAAGCGATTCTATATACAGTTTCTATGGCACCCACTTGTTTG
CCTCGCCGCGAGCACATGCGGAGAAAGTTCAGTCGCGAAGAGATGATTTA
AAGTCACTAGCATACGTATTGGTTTATCTTGTGAAGGGCACTCTTCCCTG
GAAACGGCTGGGTGTCAGTGACATGGGGCATATGAAGAATGATATATCTA
TAGAATCTCTATGTTCCGGGACTTGGGGCCTCAAAGAGTACGCAACACAA
GTTTGGAAGCTCTCTTTTGCTGAGAAACCTGATTATGCTTCGCTAATGAC
AATTCTAGATTCAGCCCTCATTCGTTTAAAGCGCACCAATCGCATTCGCT
ATGATTGGGAGTAG
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