Gchil848.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil848.t1
Unique NameGchil848.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length239
Homology
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BLAST of Gchil848.t1 vs. uniprot
Match: A0A2V3J506_9FLOR (PRP1_N domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J506_9FLOR)

HSP 1 Score: 72.8 bits (177), Expect = 4.320e-11
Identity = 99/197 (50.25%), Postives = 121/197 (61.42%), Query Frame = 0 
Query:    5 RKIAGRILVKAVKNVPKLSNIWLQAAALEVDKSAKKRVLRKELDVILKGVDVWKASIEVEYSAGVRMLLLKAVERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKTEEMVRIMREGVKCVIISRERRIEEAIAMEAGGYDGTVHAIVESAIGIGAGEWELDQCWFEAVFEVVIRG 201
            RK A R+L + VK+VP+ + +WL AA LE D SAKK VLRK               +E+E   G R+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      + +E M  +M+E V  V  SRE  + +A+ +E  GY GTV A+V + IGIG  E   +  W E   E+  +G
Sbjct:  301 RKTARRLLAQGVKHVPRSTKMWLHAAGLETDVSAKKLVLRKGXXXXXXXXXXXXXXVELEDEFGARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAEHGEDSELMDMVMKEAVGQVDASREEWLNDAVEVEKVGYVGTVRAMVSNTIGIGVKEGSRESQWVEDANEMEGKG 497
The following BLAST results are available for this feature:
BLAST of Gchil848.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J506_9FLOR4.320e-1150.25PRP1_N domain-containing protein n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 64..96
e-value: 11.0
score: 15.0
coord: 3..35
e-value: 24.0
score: 12.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 51..161
e-value: 2.9E-7
score: 31.9
IPR027108Pre-mRNA-processing factor 6/Prp1/STA1PANTHERPTHR11246:SF1PRE-MRNA-PROCESSING FACTOR 6coord: 8..202
IPR045075Pre-mRNA-splicing factor Syf1-likePANTHERPTHR11246PRE-MRNA SPLICING FACTORcoord: 8..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:463046..463762 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil848.t1Gchil848.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000017_pilon 463046..463762 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil848.t1 ID=Gchil848.t1|Name=Gchil848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=239bp
MHQDRKIAGRILVKAVKNVPKLSNIWLQAAALEVDKSAKKRVLRKELDVI
LKGVDVWKASIEVEYSAGVRMLLLKAVERVPQEVDMWIALAHLESYERAR
PVLKQAQRVVPGHIVVWITVAQLEEIEHAKKTEEMVRIMREGVKCVIISR
ERRIEEAIAMEAGGYDGTVHAIVESAIGIGAGEWELDQCWFEAVFEVVIR
GVVVRWAVVRVVVVLAIMGFAERGVVEAVMDWAFVKAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR027108Prp6/Prp1/STA1
IPR045075Syf1-like