Gchil848.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil848.t1
Unique NameGchil848.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:463046..463762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703282.1
PFAMsPRP1_N,TPR_14,TPR_16,TPR_19,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Evalue2.67e-07
EggNOG OGsKOG0495@1|root,KOG0495@2759|Eukaryota
Descriptionspliceosomal tri-snRNP complex assembly
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil848Gchil848Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 463046..463762 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil848.t1.stop1Gchil848.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 463046..463048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil848.t1.CDS1Gchil848.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 463046..463762 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil848.t1.exon1Gchil848.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 463046..463762 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil848.t1.start1Gchil848.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 463760..463762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil848.t1Gchil848.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 463046..463762 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil848.t1 ID=Gchil848.t1|Name=Gchil848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=239bp
MHQDRKIAGRILVKAVKNVPKLSNIWLQAAALEVDKSAKKRVLRKELDVI
LKGVDVWKASIEVEYSAGVRMLLLKAVERVPQEVDMWIALAHLESYERAR
PVLKQAQRVVPGHIVVWITVAQLEEIEHAKKTEEMVRIMREGVKCVIISR
ERRIEEAIAMEAGGYDGTVHAIVESAIGIGAGEWELDQCWFEAVFEVVIR
GVVVRWAVVRVVVVLAIMGFAERGVVEAVMDWAFVKAG*
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spliced messenger RNA

>Gchil848.t1 ID=Gchil848.t1|Name=Gchil848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000017_pilon:463046..463762- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCAAGACCGAAAGATCGCCGGTCGTATTCTGGTGAAGGCAGTGAA
GAACGTGCCAAAGTTGAGCAATATTTGGCTGCAAGCAGCGGCGCTGGAGG
TCGACAAGTCAGCGAAGAAGCGGGTATTGCGAAAAGAGTTGGACGTGATT
CTGAAGGGGGTAGATGTGTGGAAAGCTTCCATCGAAGTGGAATATTCGGC
TGGAGTGCGCATGCTGCTTCTCAAGGCTGTTGAAAGAGTACCCCAGGAGG
TAGATATGTGGATTGCATTGGCGCACCTAGAGAGTTATGAGCGGGCAAGA
CCGGTTCTGAAGCAAGCACAGAGGGTGGTACCTGGGCACATAGTGGTTTG
GATCACAGTTGCACAGCTAGAAGAAATAGAACATGCCAAGAAAACGGAGG
AGATGGTGAGGATCATGAGGGAGGGCGTCAAATGCGTGATCATTTCGCGG
GAAAGACGGATCGAAGAAGCAATCGCAATGGAGGCGGGTGGGTATGACGG
CACTGTGCACGCTATTGTGGAAAGTGCCATTGGAATAGGTGCAGGAGAAT
GGGAACTAGACCAATGTTGGTTCGAAGCGGTTTTCGAGGTGGTGATCAGG
GGGGTGGTAGTGAGGTGGGCGGTGGTACGAGTGGTTGTAGTGCTAGCGAT
CATGGGGTTTGCCGAGAGGGGTGTAGTGGAAGCGGTGATGGACTGGGCGT
TTGTGAAGGCGGGCTAG
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protein sequence of Gchil848.t1

>Gchil848.t1 ID=Gchil848.t1|Name=Gchil848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=239bp
MHQDRKIAGRILVKAVKNVPKLSNIWLQAAALEVDKSAKKRVLRKELDVI
LKGVDVWKASIEVEYSAGVRMLLLKAVERVPQEVDMWIALAHLESYERAR
PVLKQAQRVVPGHIVVWITVAQLEEIEHAKKTEEMVRIMREGVKCVIISR
ERRIEEAIAMEAGGYDGTVHAIVESAIGIGAGEWELDQCWFEAVFEVVIR
GVVVRWAVVRVVVVLAIMGFAERGVVEAVMDWAFVKAG*
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mRNA from alignment at tig00000017_pilon:463046..463762-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil848.t1 ID=Gchil848.t1|Name=Gchil848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000017_pilon:463046..463762- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCAAGACCGAAAGATCGCCGGTCGTATTCTGGTGAAGGCAGTGAA
GAACGTGCCAAAGTTGAGCAATATTTGGCTGCAAGCAGCGGCGCTGGAGG
TCGACAAGTCAGCGAAGAAGCGGGTATTGCGAAAAGAGTTGGACGTGATT
CTGAAGGGGGTAGATGTGTGGAAAGCTTCCATCGAAGTGGAATATTCGGC
TGGAGTGCGCATGCTGCTTCTCAAGGCTGTTGAAAGAGTACCCCAGGAGG
TAGATATGTGGATTGCATTGGCGCACCTAGAGAGTTATGAGCGGGCAAGA
CCGGTTCTGAAGCAAGCACAGAGGGTGGTACCTGGGCACATAGTGGTTTG
GATCACAGTTGCACAGCTAGAAGAAATAGAACATGCCAAGAAAACGGAGG
AGATGGTGAGGATCATGAGGGAGGGCGTCAAATGCGTGATCATTTCGCGG
GAAAGACGGATCGAAGAAGCAATCGCAATGGAGGCGGGTGGGTATGACGG
CACTGTGCACGCTATTGTGGAAAGTGCCATTGGAATAGGTGCAGGAGAAT
GGGAACTAGACCAATGTTGGTTCGAAGCGGTTTTCGAGGTGGTGATCAGG
GGGGTGGTAGTGAGGTGGGCGGTGGTACGAGTGGTTGTAGTGCTAGCGAT
CATGGGGTTTGCCGAGAGGGGTGTAGTGGAAGCGGTGATGGACTGGGCGT
TTGTGAAGGCGGGCTAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:463046..463762-

>Gchil848.t1 ID=Gchil848.t1|Name=Gchil848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000017_pilon:463046..463762- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCAAGACCGAAAGATCGCCGGTCGTATTCTGGTGAAGGCAGTGAA
GAACGTGCCAAAGTTGAGCAATATTTGGCTGCAAGCAGCGGCGCTGGAGG
TCGACAAGTCAGCGAAGAAGCGGGTATTGCGAAAAGAGTTGGACGTGATT
CTGAAGGGGGTAGATGTGTGGAAAGCTTCCATCGAAGTGGAATATTCGGC
TGGAGTGCGCATGCTGCTTCTCAAGGCTGTTGAAAGAGTACCCCAGGAGG
TAGATATGTGGATTGCATTGGCGCACCTAGAGAGTTATGAGCGGGCAAGA
CCGGTTCTGAAGCAAGCACAGAGGGTGGTACCTGGGCACATAGTGGTTTG
GATCACAGTTGCACAGCTAGAAGAAATAGAACATGCCAAGAAAACGGAGG
AGATGGTGAGGATCATGAGGGAGGGCGTCAAATGCGTGATCATTTCGCGG
GAAAGACGGATCGAAGAAGCAATCGCAATGGAGGCGGGTGGGTATGACGG
CACTGTGCACGCTATTGTGGAAAGTGCCATTGGAATAGGTGCAGGAGAAT
GGGAACTAGACCAATGTTGGTTCGAAGCGGTTTTCGAGGTGGTGATCAGG
GGGGTGGTAGTGAGGTGGGCGGTGGTACGAGTGGTTGTAGTGCTAGCGAT
CATGGGGTTTGCCGAGAGGGGTGTAGTGGAAGCGGTGATGGACTGGGCGT
TTGTGAAGGCGGGCTAG
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