Gchil687.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil687.t1
Unique NameGchil687.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length845
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004431_piloncontigtig00004431_pilon:38657..41191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704651.1
PFAMsKH_1,WW
Max annot lvl2759|Eukaryota
KEGG koko:K13210
Evalue1.52e-38
EggNOG OGsKOG1676@1|root,KOG1676@2759|Eukaryota
Descriptionnegative regulation of low-density lipoprotein particle clearance
COG categoryS
BRITEko00000,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil687Gchil687Gracilaria chilensis NLEC103_M9 malegenetig00004431_pilon 38657..41191 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil687.t1.start1Gchil687.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004431_pilon 38657..38659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil687.t1.CDS1Gchil687.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 38657..41191 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil687.t1.exon1Gchil687.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 38657..41191 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil687.t1.stop1Gchil687.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004431_pilon 41189..41191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil687.t1Gchil687.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004431_pilon 38657..41191 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=845bp
MPSSYLRHSLDDPPSRARQIASSFRRRSLASSPASSLPSKRPAPDYLHPD
SPPRAVIRRTDSSSSMSESPDSEPNCNAPSSPVNAPSRPIAPHPEQFDHT
SPEHPSASESNQPEACDFVIVPAEHVGLIIGKHGDTIKAIQNSSNAIVSM
DRSYPSRDRKFRISGTEDAVSHCRSLIERRLEAVRNRSDSALETREMWIP
VSKIGLVIGAGGATIRSIKEKTGAYATVHNDQVEADRKLLTIHGTAQQAS
HARQIIVEILQSAPHTPSRDPSLGASDDSTAMYIPRAAVGSVIGSRGTTL
RSLHQKSGAFIRVASDEEAGTSPERQIIISGSAAAVHRARSMIHFVIREG
SLRHFDEPHADIHHLQRNDEHPIDSFSRMRDIRRRAYSQGRKEDSFILSA
EHIGLLIGKNGTNIREMQNRSGAIIEVTGKNESERESSHRTVSIFGSPTE
VKIAKLLIEEKIGINHEEQKPDAEQPNLILAPQDSNIRPKSNCNTEDVNT
NSCPASKGEEAEKDEHNKENAPSKEIKETSTVTEAQRVSKTTNIPNKERE
NETESKDDGGHSEDSLANTAVESILGASKRNSTDEKQRRVSQNSRTRSNS
GPKLADLNKRHSKDGSKHHGVAVMQQQHPSTPVPLPQPHHSYAPPLVSHP
QYHPHYPPPPTYYGEPNLSAYPYYGPPPPHSTYAHSMPAMSTPISVNGME
GVRSLGSPHGSISIPCQQSEAVSATTTENSKSESDKRGPVNNGSMKTGNS
APVQPQAPAQFYPTFYQQQPGGPMMYPTAPPMYGGYVFNQHPSQFNPGPN
DYSGKGLGTLQTETFVHPFAVSMSPGMPVPQHGTSMSPVAGSSV*
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spliced messenger RNA

>Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2535bp|location=Sequence derived from alignment at tig00004431_pilon:38657..41191+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCTTCGTACCTGCGGCATTCTCTCGATGACCCTCCTTCACGCGC
AAGGCAGATAGCAAGCTCTTTTCGTAGACGGTCTCTGGCTTCTAGTCCCG
CATCCTCCTTGCCCTCCAAGCGACCCGCTCCCGATTATCTACATCCCGAT
TCCCCACCGCGAGCTGTTATTCGTCGAACCGACTCCTCTTCTTCGATGTC
GGAATCCCCGGATTCAGAACCGAATTGCAATGCTCCCTCATCCCCCGTGA
ACGCCCCTTCACGCCCTATTGCTCCCCATCCTGAGCAATTCGACCACACT
AGTCCCGAACATCCGTCTGCGTCCGAATCCAATCAACCCGAGGCATGTGA
CTTTGTGATTGTGCCAGCTGAACATGTAGGCCTcatcattggaaaacacg
gcgataccatcaaggccatacagaactcctctaaTGCTATTGTTTCCATG
GATCGAAGCTATCCCAGTCGCGATCGAAAGTTCCGTATCAGTGGCACCGA
GGATGCTGTTTCCCACTGTCGCTCGCTCATTGAGCGCCGTCTTGAAGCTG
TCCGTAACCGTTCAGACTCAGCTTTAGAAACTCGAGAGATGTGGATTCCA
GTCTCCAAAATTGGGCTCGTCATTGGTGCGGGTGGCGCTACCATTCGTTC
TATCAAAGAGAAGACGGGCGCTTATGCCACCGTTCACAACGACCAGGTGG
AGGCAGATCGAAAGTTACTTACCATTCACGGCACAGCACAGCAAGCCTCC
CATGCACGCCAGATCATAGTTGAAATCCTTCAAAGCGCACCACACACTCC
CTCGCGCGACCCTTCTCTCGGCGCGAGTGATGATTCAACTGCCATGTATA
TCCCTCGTGCGGCTGTTGGTTCTGTGATCGGCTCCCGAGGAACTACGTTG
CGATCGTTGCATCAGAAAAGCGGTGCGTTTATAAGGGTTGCCTCAGATGA
GGAAGCTGGCACGAGTCCCGAGAGACAGATTATAATATCAGGCAGTGCCG
CGGCGGTTCATCGCGCTCGCTCCATGATCCATTTTGTAATACGAGAAGGT
TCCCTGCGACACTTTGATGAGCCTCATGCTGATATCCATCATCTGCAACG
AAATGACGAGCACCCAATCGACAGTTTTTCTCGTATGCGCGACATCCGCC
GGCGTGCATACTCACAAGGAAGGAAGGAAGATTCCTTTATACTGTCCGCC
GAGCACATTGGATTGCTGATTGGCAAGAATGGTACAAACATTCGTGAAAT
GCAGAATCGATCAGGGGCAATCATTGAAGTTACAGGCAAGAATGAATCCG
AACGAGAAAGCTCCCATCGCACTGTTTCAATATTCGGGTCCCCTACTGAA
GTCAAGATTGCGAAGTTGCTCATCGAAGAAAAAATTGGCATTAATCACGA
AGAGCAAAAACCTGACGCAGAGCAGCCAAATTTGATTCTGGCACCACAAG
ATTCGAACATCCGTCCGAAAAGCAATTGCAATACTGAAGATGTCAATACA
AACAGCTGCCCAGCTTCCAAAGGTGAGGAGGCGGAGAAAGATGAACACAA
CAAGGAAAATGCACCGTCAAAAGAAATCAAAGAAACCTCCACAGTCACCG
AAGCGCAGCGGGTGTCGAAAACTACGAACATTCCaaacaaagaaagagag
aacgaaacggaaagcaagGACGATGGAGGGCATTCAGAAGACTCTTTGGC
AAACACCGCTGTTGAAAGCATCCTTGGTGCTTCGAAAAGAAACTCCACAG
ACGAAAAACAGCGAAGAGTGAGTCAGAACTCCCGAACTCGAAGTAATTCT
GGACCGAAGCTAGCTGATTTGAACAAGAGGCATTCGAAGGATGGTTCGAA
ACATCATGGGGTGGCAGTGATGCAACAACAACATCCATCAACTCCCGTTC
CTCTACCTCAACCACACCATTCTTATGCCCCTCCTTTGGTTTCACACCCA
CAGTATCATCCTCACTACCCTCCCCCTCCCACATATTATGGTGAACCGAA
CTTGAGCGCTTATCCGTACTACGGTCCACCCCCGCCGCATTCAACATATG
CTCACAGCATGCCTGCGATGTCGACGCCGATATCTGTCAATGGCATGGAA
GGGGTACGTTCTCTTGGTTCACCACATGGGTCTATTTCCATTCCATGCCA
ACAGAGCGAAGCTGTTTCTGCTACCACCACGGAAAACAGCAAATCAGAGA
GCGACAAGCGAGGACCAGTCAATAATGGATCTATGAAAACAGGAAACTCC
GCACCAGTGCAACCGCAGGCTCCTGCACAATTTTACCCCACATTTTATCA
ACAACAGCCTGGCGGACCAATGATGTACCCAACAGCCCCGCCTATGTACG
GCGGCTATGTGTTTAATCAGCACCCAAGTCAATTCAATCCCGGACCTAAT
GATTACTCGGGCAAGGGCCTTGGGACTCTTCAAACGGAAACATTCGTGCA
TCCTTTTGCCGTATCGATGAGCCCAGGGATGCCTGTACCGCAACATGGCA
CAAGCATGTCTCCAGTTGCTGGAAGTAGTGTATAG
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protein sequence of Gchil687.t1

>Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=845bp
MPSSYLRHSLDDPPSRARQIASSFRRRSLASSPASSLPSKRPAPDYLHPD
SPPRAVIRRTDSSSSMSESPDSEPNCNAPSSPVNAPSRPIAPHPEQFDHT
SPEHPSASESNQPEACDFVIVPAEHVGLIIGKHGDTIKAIQNSSNAIVSM
DRSYPSRDRKFRISGTEDAVSHCRSLIERRLEAVRNRSDSALETREMWIP
VSKIGLVIGAGGATIRSIKEKTGAYATVHNDQVEADRKLLTIHGTAQQAS
HARQIIVEILQSAPHTPSRDPSLGASDDSTAMYIPRAAVGSVIGSRGTTL
RSLHQKSGAFIRVASDEEAGTSPERQIIISGSAAAVHRARSMIHFVIREG
SLRHFDEPHADIHHLQRNDEHPIDSFSRMRDIRRRAYSQGRKEDSFILSA
EHIGLLIGKNGTNIREMQNRSGAIIEVTGKNESERESSHRTVSIFGSPTE
VKIAKLLIEEKIGINHEEQKPDAEQPNLILAPQDSNIRPKSNCNTEDVNT
NSCPASKGEEAEKDEHNKENAPSKEIKETSTVTEAQRVSKTTNIPNKERE
NETESKDDGGHSEDSLANTAVESILGASKRNSTDEKQRRVSQNSRTRSNS
GPKLADLNKRHSKDGSKHHGVAVMQQQHPSTPVPLPQPHHSYAPPLVSHP
QYHPHYPPPPTYYGEPNLSAYPYYGPPPPHSTYAHSMPAMSTPISVNGME
GVRSLGSPHGSISIPCQQSEAVSATTTENSKSESDKRGPVNNGSMKTGNS
APVQPQAPAQFYPTFYQQQPGGPMMYPTAPPMYGGYVFNQHPSQFNPGPN
DYSGKGLGTLQTETFVHPFAVSMSPGMPVPQHGTSMSPVAGSSV*
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mRNA from alignment at tig00004431_pilon:38657..41191+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2535bp|location=Sequence derived from alignment at tig00004431_pilon:38657..41191+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCTTCGTACCTGCGGCATTCTCTCGATGACCCTCCTTCACGCGC AAGGCAGATAGCAAGCTCTTTTCGTAGACGGTCTCTGGCTTCTAGTCCCG CATCCTCCTTGCCCTCCAAGCGACCCGCTCCCGATTATCTACATCCCGAT TCCCCACCGCGAGCTGTTATTCGTCGAACCGACTCCTCTTCTTCGATGTC GGAATCCCCGGATTCAGAACCGAATTGCAATGCTCCCTCATCCCCCGTGA ACGCCCCTTCACGCCCTATTGCTCCCCATCCTGAGCAATTCGACCACACT AGTCCCGAACATCCGTCTGCGTCCGAATCCAATCAACCCGAGGCATGTGA CTTTGTGATTGTGCCAGCTGAACATGTAGGCCTcatcattggaaaacacg gcgataccatcaaggccatacagaactcctctaaTGCTATTGTTTCCATG GATCGAAGCTATCCCAGTCGCGATCGAAAGTTCCGTATCAGTGGCACCGA GGATGCTGTTTCCCACTGTCGCTCGCTCATTGAGCGCCGTCTTGAAGCTG TCCGTAACCGTTCAGACTCAGCTTTAGAAACTCGAGAGATGTGGATTCCA GTCTCCAAAATTGGGCTCGTCATTGGTGCGGGTGGCGCTACCATTCGTTC TATCAAAGAGAAGACGGGCGCTTATGCCACCGTTCACAACGACCAGGTGG AGGCAGATCGAAAGTTACTTACCATTCACGGCACAGCACAGCAAGCCTCC CATGCACGCCAGATCATAGTTGAAATCCTTCAAAGCGCACCACACACTCC CTCGCGCGACCCTTCTCTCGGCGCGAGTGATGATTCAACTGCCATGTATA TCCCTCGTGCGGCTGTTGGTTCTGTGATCGGCTCCCGAGGAACTACGTTG CGATCGTTGCATCAGAAAAGCGGTGCGTTTATAAGGGTTGCCTCAGATGA GGAAGCTGGCACGAGTCCCGAGAGACAGATTATAATATCAGGCAGTGCCG CGGCGGTTCATCGCGCTCGCTCCATGATCCATTTTGTAATACGAGAAGGT TCCCTGCGACACTTTGATGAGCCTCATGCTGATATCCATCATCTGCAACG AAATGACGAGCACCCAATCGACAGTTTTTCTCGTATGCGCGACATCCGCC GGCGTGCATACTCACAAGGAAGGAAGGAAGATTCCTTTATACTGTCCGCC GAGCACATTGGATTGCTGATTGGCAAGAATGGTACAAACATTCGTGAAAT GCAGAATCGATCAGGGGCAATCATTGAAGTTACAGGCAAGAATGAATCCG AACGAGAAAGCTCCCATCGCACTGTTTCAATATTCGGGTCCCCTACTGAA GTCAAGATTGCGAAGTTGCTCATCGAAGAAAAAATTGGCATTAATCACGA AGAGCAAAAACCTGACGCAGAGCAGCCAAATTTGATTCTGGCACCACAAG ATTCGAACATCCGTCCGAAAAGCAATTGCAATACTGAAGATGTCAATACA AACAGCTGCCCAGCTTCCAAAGGTGAGGAGGCGGAGAAAGATGAACACAA CAAGGAAAATGCACCGTCAAAAGAAATCAAAGAAACCTCCACAGTCACCG AAGCGCAGCGGGTGTCGAAAACTACGAACATTCCaaacaaagaaagagag aacgaaacggaaagcaagGACGATGGAGGGCATTCAGAAGACTCTTTGGC AAACACCGCTGTTGAAAGCATCCTTGGTGCTTCGAAAAGAAACTCCACAG ACGAAAAACAGCGAAGAGTGAGTCAGAACTCCCGAACTCGAAGTAATTCT GGACCGAAGCTAGCTGATTTGAACAAGAGGCATTCGAAGGATGGTTCGAA ACATCATGGGGTGGCAGTGATGCAACAACAACATCCATCAACTCCCGTTC CTCTACCTCAACCACACCATTCTTATGCCCCTCCTTTGGTTTCACACCCA CAGTATCATCCTCACTACCCTCCCCCTCCCACATATTATGGTGAACCGAA CTTGAGCGCTTATCCGTACTACGGTCCACCCCCGCCGCATTCAACATATG CTCACAGCATGCCTGCGATGTCGACGCCGATATCTGTCAATGGCATGGAA GGGGTACGTTCTCTTGGTTCACCACATGGGTCTATTTCCATTCCATGCCA ACAGAGCGAAGCTGTTTCTGCTACCACCACGGAAAACAGCAAATCAGAGA GCGACAAGCGAGGACCAGTCAATAATGGATCTATGAAAACAGGAAACTCC GCACCAGTGCAACCGCAGGCTCCTGCACAATTTTACCCCACATTTTATCA ACAACAGCCTGGCGGACCAATGATGTACCCAACAGCCCCGCCTATGTACG GCGGCTATGTGTTTAATCAGCACCCAAGTCAATTCAATCCCGGACCTAAT GATTACTCGGGCAAGGGCCTTGGGACTCTTCAAACGGAAACATTCGTGCA TCCTTTTGCCGTATCGATGAGCCCAGGGATGCCTGTACCGCAACATGGCA CAAGCATGTCTCCAGTTGCTGGAAGTAGTGTATAG
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Coding sequence (CDS) from alignment at tig00004431_pilon:38657..41191+

>Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2535bp|location=Sequence derived from alignment at tig00004431_pilon:38657..41191+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCTTCGTACCTGCGGCATTCTCTCGATGACCCTCCTTCACGCGC
AAGGCAGATAGCAAGCTCTTTTCGTAGACGGTCTCTGGCTTCTAGTCCCG
CATCCTCCTTGCCCTCCAAGCGACCCGCTCCCGATTATCTACATCCCGAT
TCCCCACCGCGAGCTGTTATTCGTCGAACCGACTCCTCTTCTTCGATGTC
GGAATCCCCGGATTCAGAACCGAATTGCAATGCTCCCTCATCCCCCGTGA
ACGCCCCTTCACGCCCTATTGCTCCCCATCCTGAGCAATTCGACCACACT
AGTCCCGAACATCCGTCTGCGTCCGAATCCAATCAACCCGAGGCATGTGA
CTTTGTGATTGTGCCAGCTGAACATGTAGGCCTcatcattggaaaacacg
gcgataccatcaaggccatacagaactcctctaaTGCTATTGTTTCCATG
GATCGAAGCTATCCCAGTCGCGATCGAAAGTTCCGTATCAGTGGCACCGA
GGATGCTGTTTCCCACTGTCGCTCGCTCATTGAGCGCCGTCTTGAAGCTG
TCCGTAACCGTTCAGACTCAGCTTTAGAAACTCGAGAGATGTGGATTCCA
GTCTCCAAAATTGGGCTCGTCATTGGTGCGGGTGGCGCTACCATTCGTTC
TATCAAAGAGAAGACGGGCGCTTATGCCACCGTTCACAACGACCAGGTGG
AGGCAGATCGAAAGTTACTTACCATTCACGGCACAGCACAGCAAGCCTCC
CATGCACGCCAGATCATAGTTGAAATCCTTCAAAGCGCACCACACACTCC
CTCGCGCGACCCTTCTCTCGGCGCGAGTGATGATTCAACTGCCATGTATA
TCCCTCGTGCGGCTGTTGGTTCTGTGATCGGCTCCCGAGGAACTACGTTG
CGATCGTTGCATCAGAAAAGCGGTGCGTTTATAAGGGTTGCCTCAGATGA
GGAAGCTGGCACGAGTCCCGAGAGACAGATTATAATATCAGGCAGTGCCG
CGGCGGTTCATCGCGCTCGCTCCATGATCCATTTTGTAATACGAGAAGGT
TCCCTGCGACACTTTGATGAGCCTCATGCTGATATCCATCATCTGCAACG
AAATGACGAGCACCCAATCGACAGTTTTTCTCGTATGCGCGACATCCGCC
GGCGTGCATACTCACAAGGAAGGAAGGAAGATTCCTTTATACTGTCCGCC
GAGCACATTGGATTGCTGATTGGCAAGAATGGTACAAACATTCGTGAAAT
GCAGAATCGATCAGGGGCAATCATTGAAGTTACAGGCAAGAATGAATCCG
AACGAGAAAGCTCCCATCGCACTGTTTCAATATTCGGGTCCCCTACTGAA
GTCAAGATTGCGAAGTTGCTCATCGAAGAAAAAATTGGCATTAATCACGA
AGAGCAAAAACCTGACGCAGAGCAGCCAAATTTGATTCTGGCACCACAAG
ATTCGAACATCCGTCCGAAAAGCAATTGCAATACTGAAGATGTCAATACA
AACAGCTGCCCAGCTTCCAAAGGTGAGGAGGCGGAGAAAGATGAACACAA
CAAGGAAAATGCACCGTCAAAAGAAATCAAAGAAACCTCCACAGTCACCG
AAGCGCAGCGGGTGTCGAAAACTACGAACATTCCaaacaaagaaagagag
aacgaaacggaaagcaagGACGATGGAGGGCATTCAGAAGACTCTTTGGC
AAACACCGCTGTTGAAAGCATCCTTGGTGCTTCGAAAAGAAACTCCACAG
ACGAAAAACAGCGAAGAGTGAGTCAGAACTCCCGAACTCGAAGTAATTCT
GGACCGAAGCTAGCTGATTTGAACAAGAGGCATTCGAAGGATGGTTCGAA
ACATCATGGGGTGGCAGTGATGCAACAACAACATCCATCAACTCCCGTTC
CTCTACCTCAACCACACCATTCTTATGCCCCTCCTTTGGTTTCACACCCA
CAGTATCATCCTCACTACCCTCCCCCTCCCACATATTATGGTGAACCGAA
CTTGAGCGCTTATCCGTACTACGGTCCACCCCCGCCGCATTCAACATATG
CTCACAGCATGCCTGCGATGTCGACGCCGATATCTGTCAATGGCATGGAA
GGGGTACGTTCTCTTGGTTCACCACATGGGTCTATTTCCATTCCATGCCA
ACAGAGCGAAGCTGTTTCTGCTACCACCACGGAAAACAGCAAATCAGAGA
GCGACAAGCGAGGACCAGTCAATAATGGATCTATGAAAACAGGAAACTCC
GCACCAGTGCAACCGCAGGCTCCTGCACAATTTTACCCCACATTTTATCA
ACAACAGCCTGGCGGACCAATGATGTACCCAACAGCCCCGCCTATGTACG
GCGGCTATGTGTTTAATCAGCACCCAAGTCAATTCAATCCCGGACCTAAT
GATTACTCGGGCAAGGGCCTTGGGACTCTTCAAACGGAAACATTCGTGCA
TCCTTTTGCCGTATCGATGAGCCCAGGGATGCCTGTACCGCAACATGGCA
CAAGCATGTCTCCAGTTGCTGGAAGTAGTGTATAG
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