Gchil694.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil694.t1
Unique NameGchil694.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004431_piloncontigtig00004431_pilon:151282..152490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX48299
Max annot lvl2759|Eukaryota
Evalue9.07e-18
EggNOG OGs2E786@1|root,2SDV8@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil694Gchil694Gracilaria chilensis NLEC103_M9 malegenetig00004431_pilon 151282..152490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil694.t1.stop1Gchil694.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004431_pilon 151282..151284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil694.t1.CDS1Gchil694.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 151282..152490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil694.t1.exon1Gchil694.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 151282..152490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil694.t1.start1Gchil694.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004431_pilon 152488..152490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil694.t1Gchil694.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004431_pilon 151282..152490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil694.t1 ID=Gchil694.t1|Name=Gchil694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=403bp
MGQSPTLGGHVARRGSVAASVARALPAVQSLHCFARLPRSHHSTLRGRSA
PPRHTPVADPTHRVSLMLHLPFAPFDNANPYYLRNLSTGVPRPLSRPSLH
TYTPPRVSQPRAPMTPVTFAIVPRPPSFKSLPLPPSPRRYRARTTTPPTM
RITRRTFLHTAPLVLPLLLAESGNIQAELSALASKIPGVGMPDIFYPPFL
LGEWLVTRELYAVEVQPHAQDIPGHSLLSHLAIDAQREMVGQRATFPAHF
VDHRSHVIEDRRFNARAELAADDVSWQPDNPNVLSITWGRTPGSKRIREC
KVTKRSFVDAPQGYGTFVSSEYARVVDVPSQSSFMTFSKRPSVYARRRLV
RYKVSSVTDKMVPDGMDRIVIDYIYPPSPPDAKYALLLKYRDFLIRRTSR
LQ*
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spliced messenger RNA

>Gchil694.t1 ID=Gchil694.t1|Name=Gchil694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00004431_pilon:151282..152490- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAAAGTCCGACACTCGGTGGACACGTGGCGCGGCGCGGGAGTGT
CGCTGCCAGCGTGGCGCGCGCCCTTCCAGCCGTCCAGTCGCTGCATTGCT
TCGCGCGGCTGCCACGTTCTCACCACAGCACCCTCCGTGGCCGCTCCGCG
CCTCCACGTCACACACCTGTTGCCGATCCCACGCACCGTGTATCTCTCAT
GCTGCATCTCCCGTTTGCTCCATTCGATAATGCAAACCCTTACTACCTTC
GCAACCTTTCCACCGGTGTCCCACGTCCCCTTTCTCGCCCCTCTCTGCAC
ACCTACACCCCGCCCCGCGTCAGTCAGCCCCGCGCTCCCATGACTCCCGT
CACATTTGCCATCGTCCCCCGCCCCCCATCCTTCAAGTCTCTTCCCCTGC
CCCCGTCGCCTCGTCGCTATCGCGCCCGCACCACCACTCCACCTACAATG
CGCATCACACGCCGCACCTTTCTCCATACAGCCCCGCTCGTCCTCCCGCT
TCTGCTCGCCGAGTCCGGCAACATTCAAGCCGAACTCTCTGCCCTCGCCT
CCAAAATCCCCGGCGTCGGAATGCCCGACATCTTCTATCCACCCTTCCTG
CTCGGCGAATGGCTCGTCACGCGCGAGCTCTATGCCGTCGAGGTGCAACC
GCACGCTCAGGACATCCCTGGCCACTCGTTGCTCTCTCACCTCGCAATAG
ACGCTCAGCGCGAGATGGTCGGCCAGCGTGCCACATTTCCTGCCCATTTT
GTCGATCACCGTAGCCACGTCATCGAGGATCGTCGCTTTAATGCCCGCGC
AGAACTCGCCGCCGACGATGTGTCATGGCAACCAGACAATCCCAACGTTC
TCAGCATTACCTGGGGAAGAACTCCCGGATCAAAGCGCATCAGAGAGTGT
AAGGTTACCAAGCGTTCCTTCGTTGATGCCCCCCAGGGCTACGGAACCTT
TGTTTCCAGCGAATACGCCAGAGTTGTTGACGTTCCGTCCCAATCCTCCT
TTATGACCTTTTCCAAACGTCCCAGTGTGTATGCACGTAGAAGACTCGTG
CGATACAAGGTCAGCAGCGTGACCGACAAAATGGTGCCCGATGGCATGGA
CCGTATTGTTATCGACTACATTTATCCCCCGAGTCCACCAGACGCGAAAT
ACGCCTTGCTCCTCAAATACCGTGACTTCCTCATCAGACGCACAAGTCGT
CTGCAATAG
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protein sequence of Gchil694.t1

>Gchil694.t1 ID=Gchil694.t1|Name=Gchil694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=403bp
MGQSPTLGGHVARRGSVAASVARALPAVQSLHCFARLPRSHHSTLRGRSA
PPRHTPVADPTHRVSLMLHLPFAPFDNANPYYLRNLSTGVPRPLSRPSLH
TYTPPRVSQPRAPMTPVTFAIVPRPPSFKSLPLPPSPRRYRARTTTPPTM
RITRRTFLHTAPLVLPLLLAESGNIQAELSALASKIPGVGMPDIFYPPFL
LGEWLVTRELYAVEVQPHAQDIPGHSLLSHLAIDAQREMVGQRATFPAHF
VDHRSHVIEDRRFNARAELAADDVSWQPDNPNVLSITWGRTPGSKRIREC
KVTKRSFVDAPQGYGTFVSSEYARVVDVPSQSSFMTFSKRPSVYARRRLV
RYKVSSVTDKMVPDGMDRIVIDYIYPPSPPDAKYALLLKYRDFLIRRTSR
LQ*
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mRNA from alignment at tig00004431_pilon:151282..152490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil694.t1 ID=Gchil694.t1|Name=Gchil694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00004431_pilon:151282..152490- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACAAAGTCCGACACTCGGTGGACACGTGGCGCGGCGCGGGAGTGT
CGCTGCCAGCGTGGCGCGCGCCCTTCCAGCCGTCCAGTCGCTGCATTGCT
TCGCGCGGCTGCCACGTTCTCACCACAGCACCCTCCGTGGCCGCTCCGCG
CCTCCACGTCACACACCTGTTGCCGATCCCACGCACCGTGTATCTCTCAT
GCTGCATCTCCCGTTTGCTCCATTCGATAATGCAAACCCTTACTACCTTC
GCAACCTTTCCACCGGTGTCCCACGTCCCCTTTCTCGCCCCTCTCTGCAC
ACCTACACCCCGCCCCGCGTCAGTCAGCCCCGCGCTCCCATGACTCCCGT
CACATTTGCCATCGTCCCCCGCCCCCCATCCTTCAAGTCTCTTCCCCTGC
CCCCGTCGCCTCGTCGCTATCGCGCCCGCACCACCACTCCACCTACAATG
CGCATCACACGCCGCACCTTTCTCCATACAGCCCCGCTCGTCCTCCCGCT
TCTGCTCGCCGAGTCCGGCAACATTCAAGCCGAACTCTCTGCCCTCGCCT
CCAAAATCCCCGGCGTCGGAATGCCCGACATCTTCTATCCACCCTTCCTG
CTCGGCGAATGGCTCGTCACGCGCGAGCTCTATGCCGTCGAGGTGCAACC
GCACGCTCAGGACATCCCTGGCCACTCGTTGCTCTCTCACCTCGCAATAG
ACGCTCAGCGCGAGATGGTCGGCCAGCGTGCCACATTTCCTGCCCATTTT
GTCGATCACCGTAGCCACGTCATCGAGGATCGTCGCTTTAATGCCCGCGC
AGAACTCGCCGCCGACGATGTGTCATGGCAACCAGACAATCCCAACGTTC
TCAGCATTACCTGGGGAAGAACTCCCGGATCAAAGCGCATCAGAGAGTGT
AAGGTTACCAAGCGTTCCTTCGTTGATGCCCCCCAGGGCTACGGAACCTT
TGTTTCCAGCGAATACGCCAGAGTTGTTGACGTTCCGTCCCAATCCTCCT
TTATGACCTTTTCCAAACGTCCCAGTGTGTATGCACGTAGAAGACTCGTG
CGATACAAGGTCAGCAGCGTGACCGACAAAATGGTGCCCGATGGCATGGA
CCGTATTGTTATCGACTACATTTATCCCCCGAGTCCACCAGACGCGAAAT
ACGCCTTGCTCCTCAAATACCGTGACTTCCTCATCAGACGCACAAGTCGT
CTGCAATAG
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Coding sequence (CDS) from alignment at tig00004431_pilon:151282..152490-

>Gchil694.t1 ID=Gchil694.t1|Name=Gchil694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00004431_pilon:151282..152490- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACAAAGTCCGACACTCGGTGGACACGTGGCGCGGCGCGGGAGTGT
CGCTGCCAGCGTGGCGCGCGCCCTTCCAGCCGTCCAGTCGCTGCATTGCT
TCGCGCGGCTGCCACGTTCTCACCACAGCACCCTCCGTGGCCGCTCCGCG
CCTCCACGTCACACACCTGTTGCCGATCCCACGCACCGTGTATCTCTCAT
GCTGCATCTCCCGTTTGCTCCATTCGATAATGCAAACCCTTACTACCTTC
GCAACCTTTCCACCGGTGTCCCACGTCCCCTTTCTCGCCCCTCTCTGCAC
ACCTACACCCCGCCCCGCGTCAGTCAGCCCCGCGCTCCCATGACTCCCGT
CACATTTGCCATCGTCCCCCGCCCCCCATCCTTCAAGTCTCTTCCCCTGC
CCCCGTCGCCTCGTCGCTATCGCGCCCGCACCACCACTCCACCTACAATG
CGCATCACACGCCGCACCTTTCTCCATACAGCCCCGCTCGTCCTCCCGCT
TCTGCTCGCCGAGTCCGGCAACATTCAAGCCGAACTCTCTGCCCTCGCCT
CCAAAATCCCCGGCGTCGGAATGCCCGACATCTTCTATCCACCCTTCCTG
CTCGGCGAATGGCTCGTCACGCGCGAGCTCTATGCCGTCGAGGTGCAACC
GCACGCTCAGGACATCCCTGGCCACTCGTTGCTCTCTCACCTCGCAATAG
ACGCTCAGCGCGAGATGGTCGGCCAGCGTGCCACATTTCCTGCCCATTTT
GTCGATCACCGTAGCCACGTCATCGAGGATCGTCGCTTTAATGCCCGCGC
AGAACTCGCCGCCGACGATGTGTCATGGCAACCAGACAATCCCAACGTTC
TCAGCATTACCTGGGGAAGAACTCCCGGATCAAAGCGCATCAGAGAGTGT
AAGGTTACCAAGCGTTCCTTCGTTGATGCCCCCCAGGGCTACGGAACCTT
TGTTTCCAGCGAATACGCCAGAGTTGTTGACGTTCCGTCCCAATCCTCCT
TTATGACCTTTTCCAAACGTCCCAGTGTGTATGCACGTAGAAGACTCGTG
CGATACAAGGTCAGCAGCGTGACCGACAAAATGGTGCCCGATGGCATGGA
CCGTATTGTTATCGACTACATTTATCCCCCGAGTCCACCAGACGCGAAAT
ACGCCTTGCTCCTCAAATACCGTGACTTCCTCATCAGACGCACAAGTCGT
CTGCAATAG
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