Gchil4472.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4472.t1
Unique NameGchil4472.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:465204..465986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706980.1
PFAMsFA_hydroxylase
Max annot lvl2759|Eukaryota
KEGG koko:K22282
Evalue4.51e-51
EggNOG OGs2D20X@1|root,2SK19@2759|Eukaryota
DescriptionFatty acid hydroxylase superfamily
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4472Gchil4472Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 465204..465986 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4472.t1.stop1Gchil4472.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 465204..465206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4472.t1.CDS1Gchil4472.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 465204..465986 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4472.t1.exon1Gchil4472.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 465204..465986 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4472.t1.start1Gchil4472.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 465984..465986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4472.t1Gchil4472.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 465204..465986 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4472.t1 ID=Gchil4472.t1|Name=Gchil4472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=261bp
MLPALQTWTQFMLAYHSACLLFQVLDQNNLLQRHKAFRSSPALPSYGTML
PRVLFNQICIMLPTMLAIFPYIAASQNRPEPSPFTSWLALCALAPVLHEI
PFYLTHRFVLHSPRGVARFGHSLHHSAKAHSAISAMYMYSFDFVLEIVLP
YVVPLFVLRHARMLSETHANWLLILGSLGGLYEHSGYNFFPNVWSFDTRI
HAMHHIYYSCSFADGVGAPSLLDNALRTVCGSVGAPPLAARKLISWFAPN
HSAASDSKHD*
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spliced messenger RNA

>Gchil4472.t1 ID=Gchil4472.t1|Name=Gchil4472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00004426_pilon:465204..465986- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCTGCACTTCAGACATGGACTCAGTTCATGCTGGCTTACCACTC
CGCATGCCTATTGTTCCAGGTCCTTGACCAAAACAATCTCCTTCAAAGAC
ACAAAGCCTTCCGCTCAAGCCCCGCACTCCCCAGCTATGGCACCATGCTG
CCACGCGTTCTCTTCAACCAGATTTGTATCATGCTCCCAACCATGCTTGC
CATCTTTCCCTACATCGCTGCCTCACAAAACCGACCAGAACCAAGTCCCT
TCACCTCGTGGCTCGCGCTTTGCGCCCTCGCTCCAGTGCTTCATGAAATC
CCCTTTTATTTGACGCATCGATTCGTGTTGCACTCTCCACGAGGCGTAGC
ACGTTTCGGACATTCCTTGCATCACTCGGCCAAGGCACATAGCGCAATTT
CCGCCATGTACATGTATTCGTTTGACTTTGTTCTCGAAATTGTCTTGCCT
TACGTCGTTCCGCTCTTTGTGTTGCGGCATGCCAGAATGCTGAGCGAGAC
ACATGCCAACTGGCTGTTGATACTAGGATCTTTAGGAGGGCTTTACGAGC
ATTCTGGCTACAACTTCTTCCCCAACGTGTGGTCCTTTGACACTAGAATT
CACGCCATGCATCACATTTACTATTCTTGCTCGTTTGCAGACGGCGTCGG
CGCGCCGAGTTTGCTGGATAACGCGCTACGAACCGTGTGTGGAAGCGTGG
GCGCCCCGCCGCTCGCCGCCAGAAAACTCATTTCGTGGTTCGCTCCGAAT
CATTCTGCCGCGTCCGACTCCAAACATGACTGA
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protein sequence of Gchil4472.t1

>Gchil4472.t1 ID=Gchil4472.t1|Name=Gchil4472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=261bp
MLPALQTWTQFMLAYHSACLLFQVLDQNNLLQRHKAFRSSPALPSYGTML
PRVLFNQICIMLPTMLAIFPYIAASQNRPEPSPFTSWLALCALAPVLHEI
PFYLTHRFVLHSPRGVARFGHSLHHSAKAHSAISAMYMYSFDFVLEIVLP
YVVPLFVLRHARMLSETHANWLLILGSLGGLYEHSGYNFFPNVWSFDTRI
HAMHHIYYSCSFADGVGAPSLLDNALRTVCGSVGAPPLAARKLISWFAPN
HSAASDSKHD*
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mRNA from alignment at tig00004426_pilon:465204..465986-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4472.t1 ID=Gchil4472.t1|Name=Gchil4472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00004426_pilon:465204..465986- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCTGCACTTCAGACATGGACTCAGTTCATGCTGGCTTACCACTC
CGCATGCCTATTGTTCCAGGTCCTTGACCAAAACAATCTCCTTCAAAGAC
ACAAAGCCTTCCGCTCAAGCCCCGCACTCCCCAGCTATGGCACCATGCTG
CCACGCGTTCTCTTCAACCAGATTTGTATCATGCTCCCAACCATGCTTGC
CATCTTTCCCTACATCGCTGCCTCACAAAACCGACCAGAACCAAGTCCCT
TCACCTCGTGGCTCGCGCTTTGCGCCCTCGCTCCAGTGCTTCATGAAATC
CCCTTTTATTTGACGCATCGATTCGTGTTGCACTCTCCACGAGGCGTAGC
ACGTTTCGGACATTCCTTGCATCACTCGGCCAAGGCACATAGCGCAATTT
CCGCCATGTACATGTATTCGTTTGACTTTGTTCTCGAAATTGTCTTGCCT
TACGTCGTTCCGCTCTTTGTGTTGCGGCATGCCAGAATGCTGAGCGAGAC
ACATGCCAACTGGCTGTTGATACTAGGATCTTTAGGAGGGCTTTACGAGC
ATTCTGGCTACAACTTCTTCCCCAACGTGTGGTCCTTTGACACTAGAATT
CACGCCATGCATCACATTTACTATTCTTGCTCGTTTGCAGACGGCGTCGG
CGCGCCGAGTTTGCTGGATAACGCGCTACGAACCGTGTGTGGAAGCGTGG
GCGCCCCGCCGCTCGCCGCCAGAAAACTCATTTCGTGGTTCGCTCCGAAT
CATTCTGCCGCGTCCGACTCCAAACATGACTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:465204..465986-

>Gchil4472.t1 ID=Gchil4472.t1|Name=Gchil4472.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00004426_pilon:465204..465986- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCTGCACTTCAGACATGGACTCAGTTCATGCTGGCTTACCACTC
CGCATGCCTATTGTTCCAGGTCCTTGACCAAAACAATCTCCTTCAAAGAC
ACAAAGCCTTCCGCTCAAGCCCCGCACTCCCCAGCTATGGCACCATGCTG
CCACGCGTTCTCTTCAACCAGATTTGTATCATGCTCCCAACCATGCTTGC
CATCTTTCCCTACATCGCTGCCTCACAAAACCGACCAGAACCAAGTCCCT
TCACCTCGTGGCTCGCGCTTTGCGCCCTCGCTCCAGTGCTTCATGAAATC
CCCTTTTATTTGACGCATCGATTCGTGTTGCACTCTCCACGAGGCGTAGC
ACGTTTCGGACATTCCTTGCATCACTCGGCCAAGGCACATAGCGCAATTT
CCGCCATGTACATGTATTCGTTTGACTTTGTTCTCGAAATTGTCTTGCCT
TACGTCGTTCCGCTCTTTGTGTTGCGGCATGCCAGAATGCTGAGCGAGAC
ACATGCCAACTGGCTGTTGATACTAGGATCTTTAGGAGGGCTTTACGAGC
ATTCTGGCTACAACTTCTTCCCCAACGTGTGGTCCTTTGACACTAGAATT
CACGCCATGCATCACATTTACTATTCTTGCTCGTTTGCAGACGGCGTCGG
CGCGCCGAGTTTGCTGGATAACGCGCTACGAACCGTGTGTGGAAGCGTGG
GCGCCCCGCCGCTCGCCGCCAGAAAACTCATTTCGTGGTTCGCTCCGAAT
CATTCTGCCGCGTCCGACTCCAAACATGACTGA
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