Gchil854.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil854.t1
Unique Name	Gchil854.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:526338..527543 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX31379
Preferred name	SIS1
PFAMs	DnaJ,DnaJ_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09507,ko:K09510,ko:K09536
KEGG Pathway	ko04141,ko05164,map04141,map05164
GOs	GO:0002181,GO:0002183,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006403,GO:0006404,GO:0006412,GO:0006413,GO:0006457,GO:0006508,GO:0006511,GO:0006515,GO:0006518,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0010498,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0019538,GO:0019941,GO:0022626,GO:0022627,GO:0030163,GO:0030544,GO:0031072,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0035719,GO:0035966,GO:0035967,GO:0042221,GO:0042886,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050896,GO:0051031,GO:0051082,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0070727,GO:0070843,GO:0070887,GO:0071218,GO:0071310,GO:0071630,GO:0071702,GO:0071704,GO:0071705,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue	6.7e-22
EggNOG OGs	COG0484@1\|root,KOG0714@2759\|Eukaryota
Description	protein folding
COG category	O
BRITE	ko00000,ko00001,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil854	Gchil854	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 526338..527543 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil854.t1.start1	Gchil854.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 526338..526340 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil854.t1.CDS1	Gchil854.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 526338..527543 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil854.t1.exon1	Gchil854.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 526338..527543 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil854.t1.stop1	Gchil854.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 527541..527543 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil854.t1	Gchil854.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 526338..527543 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:526338..527543+
coding sequence from alignment at tig00000017_pilon:526338..527543+

mRNA sequence

>Gchil854.t1 ID=Gchil854.t1|Name=Gchil854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MCASRDKHADPYAVLGISPSATSHQIRRAYKSLCLRWHPDKHPAGSARRA
AERQFKSISVAYATILERRSKPSSSSAKHASSATSSSSRSRNHFGPAAAA
GGDFDDDAAFFFHDVCDSDEDELQQHSGSMSYRSTTRHDDFVLDLPLSLS
EYANGCVKQHRLHSEEPGGTAKLLRVVVKPGYRPADRIRFRHVRADGGDV
VFTLTQCTAPPWADAKVHGDDVHMTQRLQLVDALTGGRISVCTPRGTRLL
RVLPVIAPGATRVVPGCGLPCRAQPGEYGDVVVRFEVVFPTKVDDASRVK
LREVFSRMESSRMRRCSSVFSARAFRRHEQHEKRACSYCEREEDADGLAH
VGAQHDAGARRRGGCETKHSASKGEHGGAPQPQRLRTMFFKSSSKLASVF
R*

spliced messenger RNA

>Gchil854.t1 ID=Gchil854.t1|Name=Gchil854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000017_pilon:526338..527543+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCTTCTCGCGACAAACATGCCGACCCTTACGCTGTACTAGGCAT
CTCGCCATCCGCGACGTCTCACCAGATCCGCCGCGCGTACAAGTCGCTTT
GCCTTCGGTGGCATCCCGACAAGCACCCAGCCGGCTCGGCTCGACGCGCC
GCTGAGAGACAGTTCAAGTCCATTTCGGTGGCGTATGCCACTATCTTGGA
ACGGCGCTCCAAGCCTTCTTCCTCCAGCGCAAAACACGCCTCTTCCGCCA
CTAGTTCGTCCTCGCGCTCTCGCAATCATTTTGGGCCGGCTGCGGCCGCA
GGTGGCGATTTTGATGACGATGCCGCCTTCTTCTTCCACGACGTGTGTGA
CAGTGACGAGGATGAGTTGCAACAACACTCGGGAAGCATGTCGTACCGTT
CGACCACAAGACATGACGATTTTGTGCTTGACCTGCCGCTGTCGTTGAGC
GAATACGCCAACGGCTGTGTCAAACAACACCGCCTGCACTCGGAGGAACC
AGGTGGCACGGCAAAACTGTTGAGGGTGGTTGTGAAACCTGGATACCGAC
CGGCTGATCGAATCCGTTTCAGACACGTTCGTGCCGACGGGGGGGATGTG
GTGTTCACTCTCACGCAGTGCACTGCACCTCCGTGGGCCGATGCCAAGGT
GCACGGTGACGACGTGCACATGACGCAGAGATTACAACTTGTGGATGCGC
TCACAGGCGGTCGCATATCTGTGTGCACACCGCGTGGTACTAGATTATTA
CGCGTTCTGCCGGTCATTGCCCCAGGCGCCACCAGAGTGGTGCCTGGCTG
TGGCTTGCCATGTCGCGCACAGCCCGGTGAGTATGGAGACGTGGTTGTGA
GGTTTGAGGTGGTGTTTCCTACCAAGGTGGATGACGCGTCGCGCGTCAAG
TTGCGTGAGGTGTTTTCGCGCATGGAAAGCTCCAGGATGAGGCGCTGCTC
TTCTGTGTTCAGCGCCAGGGCGTTTCGAAGACACGAGCAGCACGAGAAGA
GGGCGTGTAGCTACTGCGAGAGGGAGGAAGACGCCGATGGTCTTGCACAT
GTTGGCGCACAACATGACGCCGGAGCACGCAGGAGAGGCGGCTGTGAAAC
AAAGCACAGCGCCTCGAAGGGCGAACATGGGGGAGCGCCGCAACCACAGA
GGCTGCGCACCATGTTCTTCAAGAGTTCTTCGAAGCTGGCGTCGGTGTTC
CGCTGA

protein sequence of Gchil854.t1

>Gchil854.t1 ID=Gchil854.t1|Name=Gchil854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MCASRDKHADPYAVLGISPSATSHQIRRAYKSLCLRWHPDKHPAGSARRA
AERQFKSISVAYATILERRSKPSSSSAKHASSATSSSSRSRNHFGPAAAA
GGDFDDDAAFFFHDVCDSDEDELQQHSGSMSYRSTTRHDDFVLDLPLSLS
EYANGCVKQHRLHSEEPGGTAKLLRVVVKPGYRPADRIRFRHVRADGGDV
VFTLTQCTAPPWADAKVHGDDVHMTQRLQLVDALTGGRISVCTPRGTRLL
RVLPVIAPGATRVVPGCGLPCRAQPGEYGDVVVRFEVVFPTKVDDASRVK
LREVFSRMESSRMRRCSSVFSARAFRRHEQHEKRACSYCEREEDADGLAH
VGAQHDAGARRRGGCETKHSASKGEHGGAPQPQRLRTMFFKSSSKLASVF
R*

mRNA from alignment at tig00000017_pilon:526338..527543+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil854.t1 ID=Gchil854.t1|Name=Gchil854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000017_pilon:526338..527543+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGCTTCTCGCGACAAACATGCCGACCCTTACGCTGTACTAGGCAT
CTCGCCATCCGCGACGTCTCACCAGATCCGCCGCGCGTACAAGTCGCTTT
GCCTTCGGTGGCATCCCGACAAGCACCCAGCCGGCTCGGCTCGACGCGCC
GCTGAGAGACAGTTCAAGTCCATTTCGGTGGCGTATGCCACTATCTTGGA
ACGGCGCTCCAAGCCTTCTTCCTCCAGCGCAAAACACGCCTCTTCCGCCA
CTAGTTCGTCCTCGCGCTCTCGCAATCATTTTGGGCCGGCTGCGGCCGCA
GGTGGCGATTTTGATGACGATGCCGCCTTCTTCTTCCACGACGTGTGTGA
CAGTGACGAGGATGAGTTGCAACAACACTCGGGAAGCATGTCGTACCGTT
CGACCACAAGACATGACGATTTTGTGCTTGACCTGCCGCTGTCGTTGAGC
GAATACGCCAACGGCTGTGTCAAACAACACCGCCTGCACTCGGAGGAACC
AGGTGGCACGGCAAAACTGTTGAGGGTGGTTGTGAAACCTGGATACCGAC
CGGCTGATCGAATCCGTTTCAGACACGTTCGTGCCGACGGGGGGGATGTG
GTGTTCACTCTCACGCAGTGCACTGCACCTCCGTGGGCCGATGCCAAGGT
GCACGGTGACGACGTGCACATGACGCAGAGATTACAACTTGTGGATGCGC
TCACAGGCGGTCGCATATCTGTGTGCACACCGCGTGGTACTAGATTATTA
CGCGTTCTGCCGGTCATTGCCCCAGGCGCCACCAGAGTGGTGCCTGGCTG
TGGCTTGCCATGTCGCGCACAGCCCGGTGAGTATGGAGACGTGGTTGTGA
GGTTTGAGGTGGTGTTTCCTACCAAGGTGGATGACGCGTCGCGCGTCAAG
TTGCGTGAGGTGTTTTCGCGCATGGAAAGCTCCAGGATGAGGCGCTGCTC
TTCTGTGTTCAGCGCCAGGGCGTTTCGAAGACACGAGCAGCACGAGAAGA
GGGCGTGTAGCTACTGCGAGAGGGAGGAAGACGCCGATGGTCTTGCACAT
GTTGGCGCACAACATGACGCCGGAGCACGCAGGAGAGGCGGCTGTGAAAC
AAAGCACAGCGCCTCGAAGGGCGAACATGGGGGAGCGCCGCAACCACAGA
GGCTGCGCACCATGTTCTTCAAGAGTTCTTCGAAGCTGGCGTCGGTGTTC
CGCTGA

Coding sequence (CDS) from alignment at tig00000017_pilon:526338..527543+

>Gchil854.t1 ID=Gchil854.t1|Name=Gchil854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000017_pilon:526338..527543+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGCTTCTCGCGACAAACATGCCGACCCTTACGCTGTACTAGGCAT
CTCGCCATCCGCGACGTCTCACCAGATCCGCCGCGCGTACAAGTCGCTTT
GCCTTCGGTGGCATCCCGACAAGCACCCAGCCGGCTCGGCTCGACGCGCC
GCTGAGAGACAGTTCAAGTCCATTTCGGTGGCGTATGCCACTATCTTGGA
ACGGCGCTCCAAGCCTTCTTCCTCCAGCGCAAAACACGCCTCTTCCGCCA
CTAGTTCGTCCTCGCGCTCTCGCAATCATTTTGGGCCGGCTGCGGCCGCA
GGTGGCGATTTTGATGACGATGCCGCCTTCTTCTTCCACGACGTGTGTGA
CAGTGACGAGGATGAGTTGCAACAACACTCGGGAAGCATGTCGTACCGTT
CGACCACAAGACATGACGATTTTGTGCTTGACCTGCCGCTGTCGTTGAGC
GAATACGCCAACGGCTGTGTCAAACAACACCGCCTGCACTCGGAGGAACC
AGGTGGCACGGCAAAACTGTTGAGGGTGGTTGTGAAACCTGGATACCGAC
CGGCTGATCGAATCCGTTTCAGACACGTTCGTGCCGACGGGGGGGATGTG
GTGTTCACTCTCACGCAGTGCACTGCACCTCCGTGGGCCGATGCCAAGGT
GCACGGTGACGACGTGCACATGACGCAGAGATTACAACTTGTGGATGCGC
TCACAGGCGGTCGCATATCTGTGTGCACACCGCGTGGTACTAGATTATTA
CGCGTTCTGCCGGTCATTGCCCCAGGCGCCACCAGAGTGGTGCCTGGCTG
TGGCTTGCCATGTCGCGCACAGCCCGGTGAGTATGGAGACGTGGTTGTGA
GGTTTGAGGTGGTGTTTCCTACCAAGGTGGATGACGCGTCGCGCGTCAAG
TTGCGTGAGGTGTTTTCGCGCATGGAAAGCTCCAGGATGAGGCGCTGCTC
TTCTGTGTTCAGCGCCAGGGCGTTTCGAAGACACGAGCAGCACGAGAAGA
GGGCGTGTAGCTACTGCGAGAGGGAGGAAGACGCCGATGGTCTTGCACAT
GTTGGCGCACAACATGACGCCGGAGCACGCAGGAGAGGCGGCTGTGAAAC
AAAGCACAGCGCCTCGAAGGGCGAACATGGGGGAGCGCCGCAACCACAGA
GGCTGCGCACCATGTTCTTCAAGAGTTCTTCGAAGCTGGCGTCGGTGTTC
CGCTGA