Gchil4454.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4454.t1
Unique NameGchil4454.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:422184..423003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RB40
PFAMsMIP
Max annot lvl2836|Bacillariophyta
Evalue9.82e-54
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota,2XG49@2836|Bacillariophyta
DescriptionMajor intrinsic protein
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4454Gchil4454Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 422184..423003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4454.t1Gchil4454.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 422184..423003 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4454.t1.start1Gchil4454.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 422184..422186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4454.t1.CDS1Gchil4454.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 422184..422634 +
Gchil4454.t1.CDS2Gchil4454.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 422720..423003 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4454.t1.exon1Gchil4454.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 422184..422634 +
Gchil4454.t1.exon2Gchil4454.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 422720..423003 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4454.t1.intron1Gchil4454.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 422635..422719 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4454.t1.stop1Gchil4454.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 423001..423003 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4454.t1 ID=Gchil4454.t1|Name=Gchil4454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MALEDFRTKFGKVMMELVATAMLVMTVQISVAVSPAMAPLAIGFVLVLLV
YAAAPISGGHVNPAVTFSVFLRGKISLDEMLLYWIFQIAGGALGALLGGI
ISGSFFALQIGEGFHFMQAFVAEFTFTALLCFVVLATATNSKVENNQYFG
AAIGLVVLVGAIAVGPISGGAFNPAVILGLNLIKHFWKIPYMLWITLADM
AGALAGAFVFYVVAPDEFEHFSDAAHQLSDQIANEAASLLPSRT*
back to top

spliced messenger RNA

>Gchil4454.t1 ID=Gchil4454.t1|Name=Gchil4454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004426_pilon:422184..423003+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCGAGGACTTTCGCACCAAGTTTGGAAAGGTCATGATGGAGCT
GGTGGCCACCGCCATGCTCGTCATGACCGTGCAGATCTCAGTTGCCGTCT
CCCCCGCAATGGCCCCGCTTGCGATCGGTTTCGTGCTCGTGCTGCTCGTG
TACGCCGCCGCGCCCATTTCCGGCGGACACGTCAATCCGGCCGTCACCTT
CTCCGTCTTTCTGCGAGGCAAGATCTCCCTCGATGAGATGCTTCTGTACT
GGATCTTCCAGATCGCCGGCGGCGCGCTGGGCGCCTTGCTTGGCGGTATC
ATTTCGGGCTCTTTCTTTGCGCTGCAGATTGGTGAGGGCTTCCATTTCAT
GCAGGCGTTTGTTGCTGAATTTACTTTCACTGCTCTGTTGTGCTTTGTGG
TATTGGCCACTGCTACCAATAGCAAGGTTGAGAACAACCAGTACTTTGGC
GCTGCGATCGGTCTCGTGGTTCTCGTCGGCGCTATCGCCGTCGGTCCGAT
CAGCGGCGGTGCGTTCAACCCTGCTGTCATCCTTGGTCTCAATCTCATCA
AGCACTTTTGGAAGATTCCGTACATGCTGTGGATCACGCTTGCTGATATG
GCCGGCGCTCTTGCTGGAGCATTTGTGTTCTACGTTGTGGCGCCGGATGA
GTTTGAACATTTCTCTGATGCAGCTCACCAATTGTCCGATCAAATCGCCA
ATGAGGCTGCGTCTCTTCTTCCGTCTCGTACTTGA
back to top

protein sequence of Gchil4454.t1

>Gchil4454.t1 ID=Gchil4454.t1|Name=Gchil4454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MALEDFRTKFGKVMMELVATAMLVMTVQISVAVSPAMAPLAIGFVLVLLV
YAAAPISGGHVNPAVTFSVFLRGKISLDEMLLYWIFQIAGGALGALLGGI
ISGSFFALQIGEGFHFMQAFVAEFTFTALLCFVVLATATNSKVENNQYFG
AAIGLVVLVGAIAVGPISGGAFNPAVILGLNLIKHFWKIPYMLWITLADM
AGALAGAFVFYVVAPDEFEHFSDAAHQLSDQIANEAASLLPSRT*
back to top

mRNA from alignment at tig00004426_pilon:422184..423003+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4454.t1 ID=Gchil4454.t1|Name=Gchil4454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=820bp|location=Sequence derived from alignment at tig00004426_pilon:422184..423003+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTCGAGGACTTTCGCACCAAGTTTGGAAAGGTCATGATGGAGCT
GGTGGCCACCGCCATGCTCGTCATGACCGTGCAGATCTCAGTTGCCGTCT
CCCCCGCAATGGCCCCGCTTGCGATCGGTTTCGTGCTCGTGCTGCTCGTG
TACGCCGCCGCGCCCATTTCCGGCGGACACGTCAATCCGGCCGTCACCTT
CTCCGTCTTTCTGCGAGGCAAGATCTCCCTCGATGAGATGCTTCTGTACT
GGATCTTCCAGATCGCCGGCGGCGCGCTGGGCGCCTTGCTTGGCGGTATC
ATTTCGGGCTCTTTCTTTGCGCTGCAGATTGGTGAGGGCTTCCATTTCAT
GCAGGCGTTTGTTGCTGAATTTACTTTCACTGCTCTGTTGTGCTTTGTGG
TATTGGCCACTGCTACCAATAGCAAGGTTGAGAACAACCAGTACTTTGGC
GGTAAGTTCAAGTAGCGTTTTGTGATGCATTTCGGGCGCTTTGAAGAATC
TCACACCAATGTTTGTTTGTCATTGTGCTTGTTCAGCTGCGATCGGTCTC
GTGGTTCTCGTCGGCGCTATCGCCGTCGGTCCGATCAGCGGCGGTGCGTT
CAACCCTGCTGTCATCCTTGGTCTCAATCTCATCAAGCACTTTTGGAAGA
TTCCGTACATGCTGTGGATCACGCTTGCTGATATGGCCGGCGCTCTTGCT
GGAGCATTTGTGTTCTACGTTGTGGCGCCGGATGAGTTTGAACATTTCTC
TGATGCAGCTCACCAATTGTCCGATCAAATCGCCAATGAGGCTGCGTCTC
TTCTTCCGTCTCGTACTTGA
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:422184..423003+

>Gchil4454.t1 ID=Gchil4454.t1|Name=Gchil4454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00004426_pilon:422184..423003+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTCGAGGACTTTCGCACCAAGTTTGGAAAGGTCATGATGGAGCT
GGTGGCCACCGCCATGCTCGTCATGACCGTGCAGATCTCAGTTGCCGTCT
CCCCCGCAATGGCCCCGCTTGCGATCGGTTTCGTGCTCGTGCTGCTCGTG
TACGCCGCCGCGCCCATTTCCGGCGGACACGTCAATCCGGCCGTCACCTT
CTCCGTCTTTCTGCGAGGCAAGATCTCCCTCGATGAGATGCTTCTGTACT
GGATCTTCCAGATCGCCGGCGGCGCGCTGGGCGCCTTGCTTGGCGGTATC
ATTTCGGGCTCTTTCTTTGCGCTGCAGATTGGTGAGGGCTTCCATTTCAT
GCAGGCGTTTGTTGCTGAATTTACTTTCACTGCTCTGTTGTGCTTTGTGG
TATTGGCCACTGCTACCAATAGCAAGGTTGAGAACAACCAGTACTTTGGC
GCTGCGATCGGTCTCGTGGTTCTCGTCGGCGCTATCGCCGTCGGTCCGAT
CAGCGGCGGTGCGTTCAACCCTGCTGTCATCCTTGGTCTCAATCTCATCA
AGCACTTTTGGAAGATTCCGTACATGCTGTGGATCACGCTTGCTGATATG
GCCGGCGCTCTTGCTGGAGCATTTGTGTTCTACGTTGTGGCGCCGGATGA
GTTTGAACATTTCTCTGATGCAGCTCACCAATTGTCCGATCAAATCGCCA
ATGAGGCTGCGTCTCTTCTTCCGTCTCGTACTTGA
back to top