Gchil4427.t2 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4427.t2
Unique NameGchil4427.t2
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length262
Homology
BLAST of Gchil4427.t2 vs. uniprot
Match: A0A2V3IUG9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG9_9FLOR)

HSP 1 Score: 206 bits (525), Expect = 4.950e-63
Identity = 124/265 (46.79%), Postives = 166/265 (62.64%), Query Frame = 0
Query:    1 MEVVIAASIIAQVSVIAIDKFTARYDAVTRLRETNHEANRHQDESEPQRWTRPQ-TQAASISERQVEMTEQNLHVDPQVEAIPDEHSIEFLEHRLMDLRNQARQLNAPDTLVQYARVTREANKVEKALNEKKGES--EKAPSAKIPLETAPFIGALSELIKPGV-GVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGIAMTVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALILCNMFISALLHA 261
            MEVVIA S+IA   V+A+D++ A+ +A + + +  H  +  Q  S  Q    PQ  ++A+ +E  V                P+E SIEFLE RL +LRNQA++LNAPDTLVQYARVTREANKVEK +NEKK      + PSA +   +  F    + ++ PG   VVR  + S M+R +PR++ F FLWYYFSWR  +  QG  MT+DC ALRP+S+LFRK    C E++W+C   A+Q PQC ISYSWAL+ CNM I+ +  A
Sbjct:    1 MEVVIATSLIAHFGVLAVDRYIAKLEA-SAVGDVPHATDEQQTISSSQ----PQGNESATKNESAV--------------TKPEEGSIEFLEMRLKELRNQAKRLNAPDTLVQYARVTREANKVEKDVNEKKAAEGITEEPSANVDALSRAF----TSMVTPGATSVVRRRINSQMLRTVPRVLGFAFLWYYFSWRSGALRQGNVMTIDCEALRPLSWLFRKQWRMCSEEEWVC---AAQRPQCAISYSWALVFCNMVIATIFKA 239          
BLAST of Gchil4427.t2 vs. uniprot
Match: R7Q5M8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5M8_CHOCR)

HSP 1 Score: 123 bits (309), Expect = 1.240e-30
Identity = 82/202 (40.59%), Postives = 113/202 (55.94%), Query Frame = 0
Query:   55 TQAASISERQVEMTEQNLHVDPQ---VEAIPDEHSIEFLEHRLMDLRNQARQLNAPDTLVQYARVTREANKVEKALNEKKGESEKAPSAKIPLETAPFIGALSELIKPGV-GVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGIAMTVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALILCN 252
            TQ AS S+ +VE    +   +PQ    E  P E SI  LE ++  LR +A+++NAPDT VQYAR+TREANKVEK L EKK      PS          +  LS+ + P     ++      +++ I R + FL LW+YFS          A+ +DCRA RP+SF+F K  P+C +D W+C   A+Q PQC +SY   L+L N
Sbjct:   40 TQRASNSKDRVEAAPAS-DANPQEADAEQFP-EGSIPALEKKVKHLRAEAKRVNAPDTFVQYARLTREANKVEKELTEKKALE---PSDTHGTVLPDVMAMLSKAVTPQAQSSMKRRAQFMVLKAIVRALPFLLLWWYFSPFGYDRGPADALVIDCRAFRPLSFIFSKREPSCGDDHWMC---AAQPPQCAVSYWMVLVLAN 233          
The following BLAST results are available for this feature:
BLAST of Gchil4427.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUG9_9FLOR4.950e-6346.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q5M8_CHOCR1.240e-3040.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 113..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 241..259
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 260..261
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:263199..264104 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t2Gchil4427.t2Gracilaria chilensis NLEC103_M9 malemRNAtig00004426_pilon 263199..264104 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4427.t2 ID=Gchil4427.t2|Name=Gchil4427.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MEVVIAASIIAQVSVIAIDKFTARYDAVTRLRETNHEANRHQDESEPQRW
TRPQTQAASISERQVEMTEQNLHVDPQVEAIPDEHSIEFLEHRLMDLRNQ
ARQLNAPDTLVQYARVTREANKVEKALNEKKGESEKAPSAKIPLETAPFI
GALSELIKPGVGVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGI
AMTVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALIL
CNMFISALLHA*
back to top