Gchil4393.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4393.t1
Unique Name	Gchil4393.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	535

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:16128..17732 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP01520
Preferred name	ODA-DHCA
PFAMs	AAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,Filamin,Kelch_4,MT,TIG
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K10408
KEGG Pathway	ko05016,map05016
GOs	GO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Evalue	7.04e-08
EggNOG OGs	COG5245@1\|root,KOG4152@1\|root,KOG3595@2759\|Eukaryota,KOG4152@2759\|Eukaryota,37IMN@33090\|Viridiplantae,34H4S@3041\|Chlorophyta
Description	Dynein alpha chain, flagellar outer arm
COG category	Z
BRITE	ko00000,ko00001,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4393	Gchil4393	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 16128..17732 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4393.t1.start1	Gchil4393.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 16128..16130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4393.t1.CDS1	Gchil4393.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 16128..17732 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4393.t1.exon1	Gchil4393.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 16128..17732 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4393.t1.stop1	Gchil4393.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 17730..17732 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4393.t1	Gchil4393.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 16128..17732 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:16128..17732+
coding sequence from alignment at tig00004426_pilon:16128..17732+

mRNA sequence

>Gchil4393.t1 ID=Gchil4393.t1|Name=Gchil4393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=535bp
MEWLGDFTPTEHSPSPRKGHTFTNLLGTPIILLFAGEDEGGVLLDDMYAL
HIERREWQRVIYAPGPKPTPRLLHTAVSVSSTSLVVIGGDTWDAAKLMES
GELDATAMNDIWVFDYSDKSWQEITDTGSIKLPHLSCSSAVFGRSRSQVP
GVYIFGGYKLEKTNQNVVYRLRISDWKLETLPHVEVDENGKKTIVRSNDT
EDSNEAQATKQTEGSGKAEKFGKRIIPKDRESHGAIWLPGVGMLIIGGDG
GQSILGDCWLFSQHKDDLQSWRWQELRLVPTGNRVGNRLPPLAGHSLTVL
PTSSLKVMVWGGILNTGQEVMASNISYVIDLDKANLAQTIRVTNTGRVPK
AGRILHGFVRARDMVFAFGGCDSEGKSHGGVPYGRLLPNFKALNQAASYF
GSEAATMAKYGGRVEKSDFDGDKLGNGVTRKSSSANASRTALTGKILEVM
DIGLLVSIEIDGKSFKGVLVANETDDETMMIDIPDVIQNASKGSAGIRGD
DMPSKRPKLDAAAAALPDSPPKVRSNRNKVIHLE*

spliced messenger RNA

>Gchil4393.t1 ID=Gchil4393.t1|Name=Gchil4393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00004426_pilon:16128..17732+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGGCTCGGCGATTTCACACCGACAGAGCATTCTCCAAGCCCTCG
AAAGGGTCACACATTTACAAATCTACTGGGCACTCCAATTATTCTTTTGT
TTGCCGGAGAGGATGAGGGCGGTGTTTTGCTTGATGATATGTATGCCCTT
CATATTGAAAGACGCGAATGGCAGCGAGTTATCTATGCACCAGGCCCTAA
ACCAACCCCAAGATTATTGCATACTGCCGTCTCAGTATCATCAACATCGC
TTGTAGTTATTGGAGGTGACACATGGGATGCCGCGAAACTCATGGAGTCT
GGGGAATTAGATGCAACCGCCATGAATGATATATGGGTTTTCGACTACAG
CGATAAGTCATGGCAGGAAATCACAGACACGGGCTCGATAAAATTACCGC
ACCTGAGCTGCTCGTCAGCAGTATTTGGGCGTTCGAGAAGTCAAGTACCC
GGTGTTTACATTTTCGGTGGCTACAAACTCGAGAAAACGAATCAAAACGT
AGTATATCGTTTGAGAATCAGCGACTGGAAACTCGAAACTCTCCCGCATG
TTGAAGTGGATGAAAACGGAAAGAAAACAATAGTAAGGAGCAATGACACT
GAAGATTCGAATGAAGCCCAAGCCACAAAGCAAACAGAGGGTTCAGGGAA
AGCCGAGAAGTTTGGCAAACGGATAATACCGAAGGATCGTGAGTCACACG
GAGCTATTTGGCTCCCAGGCGTTGGTATGCTGATCATTGGAGGGGATGGG
GGACAGTCGATTCTTGGAGATTGTTGGTTGTTTTCTCAACATAAAGATGA
CCTCCAGTCATGGAGATGGCAAGAGCTACGTCTTGTTCCAACTGGGAATC
GCGTTGGAAATAGACTTCCTCCGTTGGCGGGACACTCCCTGACTGTTTTA
CCGACTAGCTCATTGAAGGTTATGGTTTGGGGAGGAATTTTGAATACAGG
GCAAGAGGTTATGGCATCTAACATCTCGTATGTCATTGATCTCGACAAAG
CAAATCTCGCGCAAACTATTCGGGTCACGAACACAGGGAGGGTGCCGAAG
GCTGGCAGAATACTTCATGGGTTCGTTCGAGCGAGGGACATGGTATTCGC
ATTTGGCGGCTGCGATTCAGAAGGAAAAAGTCATGGTGGGGTACCGTATG
GGCGCCTGCTGCCCAACTTTAAAGCGTTGAATCAAGCTGCAAGCTATTTT
GGATCAGAAGCGGCGACTATGGCGAAGTATGGCGGGCGCGTCGAGAAGAG
TGATTTCGATGGCGACAAGCTAGGAAATGGAGTGACAAGGAAAAGTTCGT
CTGCTAATGCGTCTCGCACTGCTCTGACGGGGAAAATTCTTGAAGTGATG
GATATAGGACTGCTGGTGTCGATTGAAATTGATGGAAAGTCATTCAAGGG
GGTTCTTGTCGCCAACGAGACAGATGATGAGACAATGATGATTGACATTC
CTGACGTGATTCAAAATGCCAGCAAGGGATCTGCGGGTATTAGGGGCGAT
GATATGCCGAGCAAACGGCCAAAACTAGATGCCGCTGCTGCAGCTCTACC
AGACTCTCCGCCGAAAGTGCGGTCGAACCGAAACAAAGTAATCCATCTGG
AATGA

protein sequence of Gchil4393.t1

>Gchil4393.t1 ID=Gchil4393.t1|Name=Gchil4393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=535bp
MEWLGDFTPTEHSPSPRKGHTFTNLLGTPIILLFAGEDEGGVLLDDMYAL
HIERREWQRVIYAPGPKPTPRLLHTAVSVSSTSLVVIGGDTWDAAKLMES
GELDATAMNDIWVFDYSDKSWQEITDTGSIKLPHLSCSSAVFGRSRSQVP
GVYIFGGYKLEKTNQNVVYRLRISDWKLETLPHVEVDENGKKTIVRSNDT
EDSNEAQATKQTEGSGKAEKFGKRIIPKDRESHGAIWLPGVGMLIIGGDG
GQSILGDCWLFSQHKDDLQSWRWQELRLVPTGNRVGNRLPPLAGHSLTVL
PTSSLKVMVWGGILNTGQEVMASNISYVIDLDKANLAQTIRVTNTGRVPK
AGRILHGFVRARDMVFAFGGCDSEGKSHGGVPYGRLLPNFKALNQAASYF
GSEAATMAKYGGRVEKSDFDGDKLGNGVTRKSSSANASRTALTGKILEVM
DIGLLVSIEIDGKSFKGVLVANETDDETMMIDIPDVIQNASKGSAGIRGD
DMPSKRPKLDAAAAALPDSPPKVRSNRNKVIHLE*

mRNA from alignment at tig00004426_pilon:16128..17732+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4393.t1 ID=Gchil4393.t1|Name=Gchil4393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00004426_pilon:16128..17732+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTGGCTCGGCGATTTCACACCGACAGAGCATTCTCCAAGCCCTCG
AAAGGGTCACACATTTACAAATCTACTGGGCACTCCAATTATTCTTTTGT
TTGCCGGAGAGGATGAGGGCGGTGTTTTGCTTGATGATATGTATGCCCTT
CATATTGAAAGACGCGAATGGCAGCGAGTTATCTATGCACCAGGCCCTAA
ACCAACCCCAAGATTATTGCATACTGCCGTCTCAGTATCATCAACATCGC
TTGTAGTTATTGGAGGTGACACATGGGATGCCGCGAAACTCATGGAGTCT
GGGGAATTAGATGCAACCGCCATGAATGATATATGGGTTTTCGACTACAG
CGATAAGTCATGGCAGGAAATCACAGACACGGGCTCGATAAAATTACCGC
ACCTGAGCTGCTCGTCAGCAGTATTTGGGCGTTCGAGAAGTCAAGTACCC
GGTGTTTACATTTTCGGTGGCTACAAACTCGAGAAAACGAATCAAAACGT
AGTATATCGTTTGAGAATCAGCGACTGGAAACTCGAAACTCTCCCGCATG
TTGAAGTGGATGAAAACGGAAAGAAAACAATAGTAAGGAGCAATGACACT
GAAGATTCGAATGAAGCCCAAGCCACAAAGCAAACAGAGGGTTCAGGGAA
AGCCGAGAAGTTTGGCAAACGGATAATACCGAAGGATCGTGAGTCACACG
GAGCTATTTGGCTCCCAGGCGTTGGTATGCTGATCATTGGAGGGGATGGG
GGACAGTCGATTCTTGGAGATTGTTGGTTGTTTTCTCAACATAAAGATGA
CCTCCAGTCATGGAGATGGCAAGAGCTACGTCTTGTTCCAACTGGGAATC
GCGTTGGAAATAGACTTCCTCCGTTGGCGGGACACTCCCTGACTGTTTTA
CCGACTAGCTCATTGAAGGTTATGGTTTGGGGAGGAATTTTGAATACAGG
GCAAGAGGTTATGGCATCTAACATCTCGTATGTCATTGATCTCGACAAAG
CAAATCTCGCGCAAACTATTCGGGTCACGAACACAGGGAGGGTGCCGAAG
GCTGGCAGAATACTTCATGGGTTCGTTCGAGCGAGGGACATGGTATTCGC
ATTTGGCGGCTGCGATTCAGAAGGAAAAAGTCATGGTGGGGTACCGTATG
GGCGCCTGCTGCCCAACTTTAAAGCGTTGAATCAAGCTGCAAGCTATTTT
GGATCAGAAGCGGCGACTATGGCGAAGTATGGCGGGCGCGTCGAGAAGAG
TGATTTCGATGGCGACAAGCTAGGAAATGGAGTGACAAGGAAAAGTTCGT
CTGCTAATGCGTCTCGCACTGCTCTGACGGGGAAAATTCTTGAAGTGATG
GATATAGGACTGCTGGTGTCGATTGAAATTGATGGAAAGTCATTCAAGGG
GGTTCTTGTCGCCAACGAGACAGATGATGAGACAATGATGATTGACATTC
CTGACGTGATTCAAAATGCCAGCAAGGGATCTGCGGGTATTAGGGGCGAT
GATATGCCGAGCAAACGGCCAAAACTAGATGCCGCTGCTGCAGCTCTACC
AGACTCTCCGCCGAAAGTGCGGTCGAACCGAAACAAAGTAATCCATCTGG
AATGA

Coding sequence (CDS) from alignment at tig00004426_pilon:16128..17732+

>Gchil4393.t1 ID=Gchil4393.t1|Name=Gchil4393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00004426_pilon:16128..17732+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTGGCTCGGCGATTTCACACCGACAGAGCATTCTCCAAGCCCTCG
AAAGGGTCACACATTTACAAATCTACTGGGCACTCCAATTATTCTTTTGT
TTGCCGGAGAGGATGAGGGCGGTGTTTTGCTTGATGATATGTATGCCCTT
CATATTGAAAGACGCGAATGGCAGCGAGTTATCTATGCACCAGGCCCTAA
ACCAACCCCAAGATTATTGCATACTGCCGTCTCAGTATCATCAACATCGC
TTGTAGTTATTGGAGGTGACACATGGGATGCCGCGAAACTCATGGAGTCT
GGGGAATTAGATGCAACCGCCATGAATGATATATGGGTTTTCGACTACAG
CGATAAGTCATGGCAGGAAATCACAGACACGGGCTCGATAAAATTACCGC
ACCTGAGCTGCTCGTCAGCAGTATTTGGGCGTTCGAGAAGTCAAGTACCC
GGTGTTTACATTTTCGGTGGCTACAAACTCGAGAAAACGAATCAAAACGT
AGTATATCGTTTGAGAATCAGCGACTGGAAACTCGAAACTCTCCCGCATG
TTGAAGTGGATGAAAACGGAAAGAAAACAATAGTAAGGAGCAATGACACT
GAAGATTCGAATGAAGCCCAAGCCACAAAGCAAACAGAGGGTTCAGGGAA
AGCCGAGAAGTTTGGCAAACGGATAATACCGAAGGATCGTGAGTCACACG
GAGCTATTTGGCTCCCAGGCGTTGGTATGCTGATCATTGGAGGGGATGGG
GGACAGTCGATTCTTGGAGATTGTTGGTTGTTTTCTCAACATAAAGATGA
CCTCCAGTCATGGAGATGGCAAGAGCTACGTCTTGTTCCAACTGGGAATC
GCGTTGGAAATAGACTTCCTCCGTTGGCGGGACACTCCCTGACTGTTTTA
CCGACTAGCTCATTGAAGGTTATGGTTTGGGGAGGAATTTTGAATACAGG
GCAAGAGGTTATGGCATCTAACATCTCGTATGTCATTGATCTCGACAAAG
CAAATCTCGCGCAAACTATTCGGGTCACGAACACAGGGAGGGTGCCGAAG
GCTGGCAGAATACTTCATGGGTTCGTTCGAGCGAGGGACATGGTATTCGC
ATTTGGCGGCTGCGATTCAGAAGGAAAAAGTCATGGTGGGGTACCGTATG
GGCGCCTGCTGCCCAACTTTAAAGCGTTGAATCAAGCTGCAAGCTATTTT
GGATCAGAAGCGGCGACTATGGCGAAGTATGGCGGGCGCGTCGAGAAGAG
TGATTTCGATGGCGACAAGCTAGGAAATGGAGTGACAAGGAAAAGTTCGT
CTGCTAATGCGTCTCGCACTGCTCTGACGGGGAAAATTCTTGAAGTGATG
GATATAGGACTGCTGGTGTCGATTGAAATTGATGGAAAGTCATTCAAGGG
GGTTCTTGTCGCCAACGAGACAGATGATGAGACAATGATGATTGACATTC
CTGACGTGATTCAAAATGCCAGCAAGGGATCTGCGGGTATTAGGGGCGAT
GATATGCCGAGCAAACGGCCAAAACTAGATGCCGCTGCTGCAGCTCTACC
AGACTCTCCGCCGAAAGTGCGGTCGAACCGAAACAAAGTAATCCATCTGG
AATGA