Gchil4508.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4508.t1
Unique NameGchil4508.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:644122..644751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog376686.Fjoh_1840
PFAMsadh_short
Max annot lvl976|Bacteroidetes
Evalue4.45e-06
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,4NF39@976|Bacteroidetes,1HXVH@117743|Flavobacteriia,2NV48@237|Flavobacterium
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4508Gchil4508Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 644122..644751 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4508.t1.stop1Gchil4508.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 644122..644124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4508.t1.CDS1Gchil4508.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 644122..644751 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4508.t1.exon1Gchil4508.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 644122..644751 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4508.t1.start1Gchil4508.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 644749..644751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4508.t1Gchil4508.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 644122..644751 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4508.t1 ID=Gchil4508.t1|Name=Gchil4508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=210bp
MMNGLDRVDEEQKYQTLNIDFKHFIAQNSLSGIIFSNHSEIIGLNNVWFH
PVFLKMLTNGLLFYGVKCFAMCRSEHRIRTLRNGSLAKSTEASMNVDSLA
QSFGSSSKFPEGGPVFAFVTGASRGLGLAIAPKLLDDGFVVVWSQRSVSV
LSSIHSNASNARLDLAEAQSDELFTNKMISKVPYIDLLMNNAVICREDRL
VNNGFPPLT*
back to top

spliced messenger RNA

>Gchil4508.t1 ID=Gchil4508.t1|Name=Gchil4508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004426_pilon:644122..644751- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAATGGACTCGACCGAGTTGACGAAGAGCAGAAATATCAGACTTT
AAACATTGACTTCAAACATTTCATCGCGCAGAATTCTCTCTCTGGGATCA
TCTTCTCCAACCATTCGGAGATCATCGGCTTGAATAATGTGTGGTTTCAT
CCTGTATTTTTGAAAATGTTAACGAATGGTCTACTTTTTTACGGGGTAAA
ATGCTTCGCCATGTGCCGAAGTGAACATCGAATTCGGACGTTGCGCAATG
GTAGTCTGGCAAAGTCTACTGAGGCCAGCATGAATGTTGACAGCCTCGCG
CAGTCTTTTGGCTCTTCGAGTAAGTTTCCAGAAGGTGGCCCAGTGTTTGC
ATTTGTAACGGGAGCCTCGCGAGGACTTGGTCTGGCAATAGCTCCAAAGC
TGTTAGATGATGGCTTTGTAGTGGTTTGGTCGCAAAGGTCAGTTTCTGTG
TTATCATCTATTCATTCAAACGCCTCAAATGCCCGACTAGATTTGGCCGA
AGCGCAAAGCGACGAGTTGTTCACAAATAAAATGATCTCCAAAGTACCGT
ACATTGATTTACTCATGAACAACGCGGTCATTTGTCGTGAAGATCGTCTC
GTTAATAATGGATTTCCTCCGTTGACTTAA
back to top

protein sequence of Gchil4508.t1

>Gchil4508.t1 ID=Gchil4508.t1|Name=Gchil4508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MMNGLDRVDEEQKYQTLNIDFKHFIAQNSLSGIIFSNHSEIIGLNNVWFH
PVFLKMLTNGLLFYGVKCFAMCRSEHRIRTLRNGSLAKSTEASMNVDSLA
QSFGSSSKFPEGGPVFAFVTGASRGLGLAIAPKLLDDGFVVVWSQRSVSV
LSSIHSNASNARLDLAEAQSDELFTNKMISKVPYIDLLMNNAVICREDRL
VNNGFPPLT*
back to top

mRNA from alignment at tig00004426_pilon:644122..644751-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4508.t1 ID=Gchil4508.t1|Name=Gchil4508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004426_pilon:644122..644751- (Gracilaria chilensis NLEC103_M9 male)
ATGATGAATGGACTCGACCGAGTTGACGAAGAGCAGAAATATCAGACTTT
AAACATTGACTTCAAACATTTCATCGCGCAGAATTCTCTCTCTGGGATCA
TCTTCTCCAACCATTCGGAGATCATCGGCTTGAATAATGTGTGGTTTCAT
CCTGTATTTTTGAAAATGTTAACGAATGGTCTACTTTTTTACGGGGTAAA
ATGCTTCGCCATGTGCCGAAGTGAACATCGAATTCGGACGTTGCGCAATG
GTAGTCTGGCAAAGTCTACTGAGGCCAGCATGAATGTTGACAGCCTCGCG
CAGTCTTTTGGCTCTTCGAGTAAGTTTCCAGAAGGTGGCCCAGTGTTTGC
ATTTGTAACGGGAGCCTCGCGAGGACTTGGTCTGGCAATAGCTCCAAAGC
TGTTAGATGATGGCTTTGTAGTGGTTTGGTCGCAAAGGTCAGTTTCTGTG
TTATCATCTATTCATTCAAACGCCTCAAATGCCCGACTAGATTTGGCCGA
AGCGCAAAGCGACGAGTTGTTCACAAATAAAATGATCTCCAAAGTACCGT
ACATTGATTTACTCATGAACAACGCGGTCATTTGTCGTGAAGATCGTCTC
GTTAATAATGGATTTCCTCCGTTGACTTAA
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:644122..644751-

>Gchil4508.t1 ID=Gchil4508.t1|Name=Gchil4508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00004426_pilon:644122..644751- (Gracilaria chilensis NLEC103_M9 male)
ATGATGAATGGACTCGACCGAGTTGACGAAGAGCAGAAATATCAGACTTT
AAACATTGACTTCAAACATTTCATCGCGCAGAATTCTCTCTCTGGGATCA
TCTTCTCCAACCATTCGGAGATCATCGGCTTGAATAATGTGTGGTTTCAT
CCTGTATTTTTGAAAATGTTAACGAATGGTCTACTTTTTTACGGGGTAAA
ATGCTTCGCCATGTGCCGAAGTGAACATCGAATTCGGACGTTGCGCAATG
GTAGTCTGGCAAAGTCTACTGAGGCCAGCATGAATGTTGACAGCCTCGCG
CAGTCTTTTGGCTCTTCGAGTAAGTTTCCAGAAGGTGGCCCAGTGTTTGC
ATTTGTAACGGGAGCCTCGCGAGGACTTGGTCTGGCAATAGCTCCAAAGC
TGTTAGATGATGGCTTTGTAGTGGTTTGGTCGCAAAGGTCAGTTTCTGTG
TTATCATCTATTCATTCAAACGCCTCAAATGCCCGACTAGATTTGGCCGA
AGCGCAAAGCGACGAGTTGTTCACAAATAAAATGATCTCCAAAGTACCGT
ACATTGATTTACTCATGAACAACGCGGTCATTTGTCGTGAAGATCGTCTC
GTTAATAATGGATTTCCTCCGTTGACTTAA
back to top