Gchil4440.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4440.t1
Unique NameGchil4440.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:334684..335601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4440Gchil4440Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 334684..335601 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4440.t1.start1Gchil4440.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 334684..334686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4440.t1.CDS1Gchil4440.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 334684..335601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4440.t1.exon1Gchil4440.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 334684..335601 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4440.t1.stop1Gchil4440.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 335599..335601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4440.t1Gchil4440.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 334684..335601 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4440.t1 ID=Gchil4440.t1|Name=Gchil4440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=306bp
MLTVCHTPPALPPVVVVGAMVVVGAVVVVVAMVVVGAMVVVVVAMVVVGA
MVVVVVAMVVVGAMVVVVVAMVVVGAMVVVVVAMVVVGAMVVVVTMVVVG
AMVVVVTMVVVGAMVVVVTMVVVGAMVVVVAMVVVGAMVVVVVIATVVEG
GAVVVGGAVVVAPKPDGLEQGEPTKLQSRPLLRIVPMQQLQPPPGLKWHP
EPPQLPQPAAQHTSSLAMPRAQVGSAAISARSTTCSSTLGRFDSGTETAQ
HRCATANNTTTATRLARLMVDSAASQTKRATTRCARLRAKGGLESLGSLA
MGSCI*
back to top

spliced messenger RNA

>Gchil4440.t1 ID=Gchil4440.t1|Name=Gchil4440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00004426_pilon:334684..335601+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACTGTTTGCCACACCCCGCCTGCGCTACCCCCGGTGGTCGTGGT
CGGCGCCATGGTTGTGGTTGGCGCCGTGGTGGTGGTGGTAGCCATGGTTG
TGGTCGGCGCCATGGTGGTGGTGGTGGTAGCCATGGTTGTGGTCGGCGCC
ATGGTGGTGGTGGTGGTAGCCATGGTTGTGGTCGGCGCCATGGTGGTGGT
GGTGGTAGCCATGGTTGTGGTCGGCGCCATGGTGGTGGTGGTGGTAGCCA
TGGTTGTGGTCGGCGCCATGGTGGTGGTGGTAACCATGGTTGTGGTCGGC
GCCATGGTGGTCGTAGTAACCATGGTTGTGGTCGGCGCCATGGTGGTAGT
AGTAACCATGGTTGTGGTCGGCGCCATGGTGGTAGTAGTAGCCATGGTTG
TGGTCGGCGCCATGGTGGTGGTCGTGGTCATCGCCACAGTGGTGGAAGGC
GGCGCAGTGGTGGTAGGCGGCGCAGTGGTCGTCGCCCCAAAGCCAGACGG
ATTAGAGCAAGGAGAGCCGACAAAGTTACAATCACGCCCTTTGTTGCGAA
TCGTGCCCATGCAACAGCTCCAACCTCCGCCCGGCCTCAAGTGGCATCCA
GAACCGCCACAGCTTCCGCAACCCGCCGCACAGCACACTTCCTCATTAGC
AATGCCGCGCGCGCAAGTGGGGTCTGCAGCCATATCGGCGCGCTCAACCA
CGTGCAGCTCAACGCTCGGCCGCTTCGACAGCGGCACAGAAACGGCGCAG
CATCGCTGCGCGACGGCGAACAACACGACCACGGCCACCAGACTGGCGCG
ACTCATGGTAGATAGTGCAGCAAGCCAGACAAAACGCGCTACAACACGGT
GCGCTAGACTGCGGGCGAAAGGCGGGCTTGAGAGCTTGGGGTCGCTCGCC
ATGGGCTCTTGTATCTAG
back to top

protein sequence of Gchil4440.t1

>Gchil4440.t1 ID=Gchil4440.t1|Name=Gchil4440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MLTVCHTPPALPPVVVVGAMVVVGAVVVVVAMVVVGAMVVVVVAMVVVGA
MVVVVVAMVVVGAMVVVVVAMVVVGAMVVVVVAMVVVGAMVVVVTMVVVG
AMVVVVTMVVVGAMVVVVTMVVVGAMVVVVAMVVVGAMVVVVVIATVVEG
GAVVVGGAVVVAPKPDGLEQGEPTKLQSRPLLRIVPMQQLQPPPGLKWHP
EPPQLPQPAAQHTSSLAMPRAQVGSAAISARSTTCSSTLGRFDSGTETAQ
HRCATANNTTTATRLARLMVDSAASQTKRATTRCARLRAKGGLESLGSLA
MGSCI*
back to top

mRNA from alignment at tig00004426_pilon:334684..335601+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4440.t1 ID=Gchil4440.t1|Name=Gchil4440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00004426_pilon:334684..335601+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACTGTTTGCCACACCCCGCCTGCGCTACCCCCGGTGGTCGTGGT
CGGCGCCATGGTTGTGGTTGGCGCCGTGGTGGTGGTGGTAGCCATGGTTG
TGGTCGGCGCCATGGTGGTGGTGGTGGTAGCCATGGTTGTGGTCGGCGCC
ATGGTGGTGGTGGTGGTAGCCATGGTTGTGGTCGGCGCCATGGTGGTGGT
GGTGGTAGCCATGGTTGTGGTCGGCGCCATGGTGGTGGTGGTGGTAGCCA
TGGTTGTGGTCGGCGCCATGGTGGTGGTGGTAACCATGGTTGTGGTCGGC
GCCATGGTGGTCGTAGTAACCATGGTTGTGGTCGGCGCCATGGTGGTAGT
AGTAACCATGGTTGTGGTCGGCGCCATGGTGGTAGTAGTAGCCATGGTTG
TGGTCGGCGCCATGGTGGTGGTCGTGGTCATCGCCACAGTGGTGGAAGGC
GGCGCAGTGGTGGTAGGCGGCGCAGTGGTCGTCGCCCCAAAGCCAGACGG
ATTAGAGCAAGGAGAGCCGACAAAGTTACAATCACGCCCTTTGTTGCGAA
TCGTGCCCATGCAACAGCTCCAACCTCCGCCCGGCCTCAAGTGGCATCCA
GAACCGCCACAGCTTCCGCAACCCGCCGCACAGCACACTTCCTCATTAGC
AATGCCGCGCGCGCAAGTGGGGTCTGCAGCCATATCGGCGCGCTCAACCA
CGTGCAGCTCAACGCTCGGCCGCTTCGACAGCGGCACAGAAACGGCGCAG
CATCGCTGCGCGACGGCGAACAACACGACCACGGCCACCAGACTGGCGCG
ACTCATGGTAGATAGTGCAGCAAGCCAGACAAAACGCGCTACAACACGGT
GCGCTAGACTGCGGGCGAAAGGCGGGCTTGAGAGCTTGGGGTCGCTCGCC
ATGGGCTCTTGTATCTAG
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:334684..335601+

>Gchil4440.t1 ID=Gchil4440.t1|Name=Gchil4440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00004426_pilon:334684..335601+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACTGTTTGCCACACCCCGCCTGCGCTACCCCCGGTGGTCGTGGT
CGGCGCCATGGTTGTGGTTGGCGCCGTGGTGGTGGTGGTAGCCATGGTTG
TGGTCGGCGCCATGGTGGTGGTGGTGGTAGCCATGGTTGTGGTCGGCGCC
ATGGTGGTGGTGGTGGTAGCCATGGTTGTGGTCGGCGCCATGGTGGTGGT
GGTGGTAGCCATGGTTGTGGTCGGCGCCATGGTGGTGGTGGTGGTAGCCA
TGGTTGTGGTCGGCGCCATGGTGGTGGTGGTAACCATGGTTGTGGTCGGC
GCCATGGTGGTCGTAGTAACCATGGTTGTGGTCGGCGCCATGGTGGTAGT
AGTAACCATGGTTGTGGTCGGCGCCATGGTGGTAGTAGTAGCCATGGTTG
TGGTCGGCGCCATGGTGGTGGTCGTGGTCATCGCCACAGTGGTGGAAGGC
GGCGCAGTGGTGGTAGGCGGCGCAGTGGTCGTCGCCCCAAAGCCAGACGG
ATTAGAGCAAGGAGAGCCGACAAAGTTACAATCACGCCCTTTGTTGCGAA
TCGTGCCCATGCAACAGCTCCAACCTCCGCCCGGCCTCAAGTGGCATCCA
GAACCGCCACAGCTTCCGCAACCCGCCGCACAGCACACTTCCTCATTAGC
AATGCCGCGCGCGCAAGTGGGGTCTGCAGCCATATCGGCGCGCTCAACCA
CGTGCAGCTCAACGCTCGGCCGCTTCGACAGCGGCACAGAAACGGCGCAG
CATCGCTGCGCGACGGCGAACAACACGACCACGGCCACCAGACTGGCGCG
ACTCATGGTAGATAGTGCAGCAAGCCAGACAAAACGCGCTACAACACGGT
GCGCTAGACTGCGGGCGAAAGGCGGGCTTGAGAGCTTGGGGTCGCTCGCC
ATGGGCTCTTGTATCTAG
back to top