Gchil4493.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4493.t1
Unique NameGchil4493.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:514856..515969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707753.1
Preferred nameEIF3H
PFAMsJAB
Max annot lvl2759|Eukaryota
KEGG rclassRC02636
KEGG koko:K03247,ko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,ko03013,ko05162,map00906,map01100,map01110,map03013,map05162
KEGG ModuleM00097
GOsGO:0001101,GO:0001944,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008135,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0016282,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034284,GO:0034285,GO:0034286,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045747,GO:0045948,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048880,GO:0048882,GO:0048925,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070647,GO:0070993,GO:0071541,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0097159,GO:0097305,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Evalue3.13e-77
EggNOG OGsKOG1560@1|root,KOG1560@2759|Eukaryota
EC5.2.1.12
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4493Gchil4493Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 514856..515969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4493.t1Gchil4493.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 514856..515969 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4493.t1.stop1Gchil4493.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 514856..514858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4493.t1.CDS1Gchil4493.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 514856..515827 -
Gchil4493.t1.CDS2Gchil4493.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 515907..515969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4493.t1.exon1Gchil4493.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 514856..515827 -
Gchil4493.t1.exon2Gchil4493.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 515907..515969 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4493.t1.intron1Gchil4493.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 515828..515906 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4493.t1.start1Gchil4493.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 515967..515969 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4493.t1 ID=Gchil4493.t1|Name=Gchil4493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp
MASAIDLRPSQKIGVVQLEGITIMKIIKHCHDNFPVTVMGQLLGMDVDGI
LEITNCYPFMSQPTNTTTAGPDGIDVTSFEKEQQQYQRDMMWCVREVNID
HQVVGWYQSTGSQMGSFLSSQWIDTQYNYQKHLGNIVCLIYDPVRTEEGL
LSIHAYRLTKQFMNLMRKGEFTSLGFANTDVLSNSIIEEVPISLHNSSLI
NASLVELDQADEFTGENDVELARLSISDKPVLEQSMEFLISELDTLGKEQ
SKYSYFIRNLVRSQGQLLEKMRKRRAENKTREASGEEPLPEDEDVVQMLE
KEPARLECKILLKDLDSYVESIKSLASEGIVKQYGVSAVQAGDE*
back to top

spliced messenger RNA

>Gchil4493.t1 ID=Gchil4493.t1|Name=Gchil4493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00004426_pilon:514856..515969- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGTGCAATCGACTTACGCCCGTCCCAGAAAATCGGCGTTGTGCA
GTTGGAAGGAATTACAATAATGAAAATCATCAAGCACTGCCATGATAATT
TTCCGGTGACCGTCATGGGGCAGCTTCTTGGTATGGATGTTGACGGCATA
CTAGAAATAACCAATTGCTACCCGTTCATGTCACAACCAACGAATACGAC
GACAGCTGGCCCAGACGGAATTGATGTTACATCATTTGAAAAAGAACAAC
AGCAGTATCAGCGAGACATGATGTGGTGTGTTCGTGAAGTGAACATCGAC
CACCAAGTTGTTGGGTGGTATCAAAGCACAGGTTCCCAGATGGGCTCTTT
TTTATCGTCGCAGTGGATCGACACCCAGTATAACTATCAAAAGCATTTAG
GAAACATAGTGTGCCTCATATACGACCCAGTAAGAACTGAAGAGGGCCTG
CTATCTATTCATGCATATCGGTTGACCAAGCAGTTCATGAATCTCATGAG
GAAAGGGGAATTTACTTCTCTAGGCTTTGCCAATACAGATGTTCTTTCCA
ATTCAATAATCGAAGAGGTCCCCATTTCACTGCACAACTCAAGCTTAATC
AATGCCTCTCTTGTAGAGCTCGACCAGGCGGATGAATTTACGGGGGAAAA
CGATGTTGAGCTCGCTCGATTGTCAATAAGCGACAAACCAGTCTTGGAGC
AGAGCATGGAGTTTTTGATAAGTGAGTTGGACACTCTAGGAAAGGAGCAG
AGTAAGTACTCGTACTTCATACGGAACCTTGTCAGAAGCCAAGGTCAGTT
ACTGGAGAAAATGAGGAAGCGAAGAGCCGAAAACAAGACTAGAGAGGCAA
GTGGGGAAGAGCCGCTTCCAGAAGACGAAGATGTGGTTCAGATGCTAGAA
AAAGAACCAGCTCGCCTGGAGTGCAAAATCTTGCTCAAGGATCTTGATTC
TTATGTTGAAAGCATAAAGTCTCTTGCTAGCGAAGGAATTGTCAAACAGT
ATGGTGTCTCGGCTGTGCAGGCTGGAGATGAGTAA
back to top

protein sequence of Gchil4493.t1

>Gchil4493.t1 ID=Gchil4493.t1|Name=Gchil4493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=345bp
MASAIDLRPSQKIGVVQLEGITIMKIIKHCHDNFPVTVMGQLLGMDVDGI
LEITNCYPFMSQPTNTTTAGPDGIDVTSFEKEQQQYQRDMMWCVREVNID
HQVVGWYQSTGSQMGSFLSSQWIDTQYNYQKHLGNIVCLIYDPVRTEEGL
LSIHAYRLTKQFMNLMRKGEFTSLGFANTDVLSNSIIEEVPISLHNSSLI
NASLVELDQADEFTGENDVELARLSISDKPVLEQSMEFLISELDTLGKEQ
SKYSYFIRNLVRSQGQLLEKMRKRRAENKTREASGEEPLPEDEDVVQMLE
KEPARLECKILLKDLDSYVESIKSLASEGIVKQYGVSAVQAGDE*
back to top

mRNA from alignment at tig00004426_pilon:514856..515969-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4493.t1 ID=Gchil4493.t1|Name=Gchil4493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1114bp|location=Sequence derived from alignment at tig00004426_pilon:514856..515969- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGTGCAATCGACTTACGCCCGTCCCAGAAAATCGGCGTTGTGCA
GTTGGAAGGAATTGTACGTTGACCAGTTTACCCCGATAAAACCAAGGCGA
TCAATGAATCCACTAACGTTCTTTTATTCTTTACGTACGTAGACAATAAT
GAAAATCATCAAGCACTGCCATGATAATTTTCCGGTGACCGTCATGGGGC
AGCTTCTTGGTATGGATGTTGACGGCATACTAGAAATAACCAATTGCTAC
CCGTTCATGTCACAACCAACGAATACGACGACAGCTGGCCCAGACGGAAT
TGATGTTACATCATTTGAAAAAGAACAACAGCAGTATCAGCGAGACATGA
TGTGGTGTGTTCGTGAAGTGAACATCGACCACCAAGTTGTTGGGTGGTAT
CAAAGCACAGGTTCCCAGATGGGCTCTTTTTTATCGTCGCAGTGGATCGA
CACCCAGTATAACTATCAAAAGCATTTAGGAAACATAGTGTGCCTCATAT
ACGACCCAGTAAGAACTGAAGAGGGCCTGCTATCTATTCATGCATATCGG
TTGACCAAGCAGTTCATGAATCTCATGAGGAAAGGGGAATTTACTTCTCT
AGGCTTTGCCAATACAGATGTTCTTTCCAATTCAATAATCGAAGAGGTCC
CCATTTCACTGCACAACTCAAGCTTAATCAATGCCTCTCTTGTAGAGCTC
GACCAGGCGGATGAATTTACGGGGGAAAACGATGTTGAGCTCGCTCGATT
GTCAATAAGCGACAAACCAGTCTTGGAGCAGAGCATGGAGTTTTTGATAA
GTGAGTTGGACACTCTAGGAAAGGAGCAGAGTAAGTACTCGTACTTCATA
CGGAACCTTGTCAGAAGCCAAGGTCAGTTACTGGAGAAAATGAGGAAGCG
AAGAGCCGAAAACAAGACTAGAGAGGCAAGTGGGGAAGAGCCGCTTCCAG
AAGACGAAGATGTGGTTCAGATGCTAGAAAAAGAACCAGCTCGCCTGGAG
TGCAAAATCTTGCTCAAGGATCTTGATTCTTATGTTGAAAGCATAAAGTC
TCTTGCTAGCGAAGGAATTGTCAAACAGTATGGTGTCTCGGCTGTGCAGG
CTGGAGATGAGTAA
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:514856..515969-

>Gchil4493.t1 ID=Gchil4493.t1|Name=Gchil4493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00004426_pilon:514856..515969- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGTGCAATCGACTTACGCCCGTCCCAGAAAATCGGCGTTGTGCA
GTTGGAAGGAATTACAATAATGAAAATCATCAAGCACTGCCATGATAATT
TTCCGGTGACCGTCATGGGGCAGCTTCTTGGTATGGATGTTGACGGCATA
CTAGAAATAACCAATTGCTACCCGTTCATGTCACAACCAACGAATACGAC
GACAGCTGGCCCAGACGGAATTGATGTTACATCATTTGAAAAAGAACAAC
AGCAGTATCAGCGAGACATGATGTGGTGTGTTCGTGAAGTGAACATCGAC
CACCAAGTTGTTGGGTGGTATCAAAGCACAGGTTCCCAGATGGGCTCTTT
TTTATCGTCGCAGTGGATCGACACCCAGTATAACTATCAAAAGCATTTAG
GAAACATAGTGTGCCTCATATACGACCCAGTAAGAACTGAAGAGGGCCTG
CTATCTATTCATGCATATCGGTTGACCAAGCAGTTCATGAATCTCATGAG
GAAAGGGGAATTTACTTCTCTAGGCTTTGCCAATACAGATGTTCTTTCCA
ATTCAATAATCGAAGAGGTCCCCATTTCACTGCACAACTCAAGCTTAATC
AATGCCTCTCTTGTAGAGCTCGACCAGGCGGATGAATTTACGGGGGAAAA
CGATGTTGAGCTCGCTCGATTGTCAATAAGCGACAAACCAGTCTTGGAGC
AGAGCATGGAGTTTTTGATAAGTGAGTTGGACACTCTAGGAAAGGAGCAG
AGTAAGTACTCGTACTTCATACGGAACCTTGTCAGAAGCCAAGGTCAGTT
ACTGGAGAAAATGAGGAAGCGAAGAGCCGAAAACAAGACTAGAGAGGCAA
GTGGGGAAGAGCCGCTTCCAGAAGACGAAGATGTGGTTCAGATGCTAGAA
AAAGAACCAGCTCGCCTGGAGTGCAAAATCTTGCTCAAGGATCTTGATTC
TTATGTTGAAAGCATAAAGTCTCTTGCTAGCGAAGGAATTGTCAAACAGT
ATGGTGTCTCGGCTGTGCAGGCTGGAGATGAGTAA
back to top