Gchil4489.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4489.t1
Unique NameGchil4489.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:505140..506617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010674320.1
PFAMsDUF2363
Max annot lvl35493|Streptophyta
Evalue1.54e-67
EggNOG OGsCOG3823@1|root,KOG4508@2759|Eukaryota,37NC9@33090|Viridiplantae,3G829@35493|Streptophyta
DescriptionCCR4-NOT transcription complex subunit
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4489Gchil4489Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 505140..506617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4489.t1Gchil4489.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 505140..506617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4489.t1.stop1Gchil4489.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 505140..505142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4489.t1.CDS1Gchil4489.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 505140..505206 -
Gchil4489.t1.CDS2Gchil4489.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 505320..506617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4489.t1.exon1Gchil4489.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 505140..505206 -
Gchil4489.t1.exon2Gchil4489.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 505320..506617 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4489.t1.intron1Gchil4489.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 505207..505319 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4489.t1.start1Gchil4489.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 506615..506617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4489.t1 ID=Gchil4489.t1|Name=Gchil4489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=455bp
MKPPLPVRLSKQAFASLISVLESVNSPLGDLSRRLWQSPCASFSTTAVGA
SIAALLQDDLLPNPSQRLVAIFVLYDMIAARSAPSSSPTSVLERLIASPL
SIILFELMSDTNPYASEQLFLSHLLRLSEDHRSQSSGGDLPTDGEIAKTA
AVALYGALEDAIRSGASAATPNISSLRHMWATRHPETPDTSYGLKPVSAV
VPDPDLFVNLDSGQLVNELGSVVALEDFSPSFVRIPPPFLPIELESKELR
WIDPEPLHEIIWDPEMGMKDERGAELREIISKAIKSPIPEAQRMKVRRML
NDDPKLVHLCGITPQKLPELVNNNASLATEILLNLMSSTQMPKYLDALVN
MDMNLQSMDIVSRLSNTVQLPRDFMHTYISNCMRSCGDIPDKPAQDRSVR
SFSVFLKRLIKNRNIDLQDLLVEVQEFCMGYCRIREVADLYRSLQVSVKM
ESAQ*
back to top

spliced messenger RNA

>Gchil4489.t1 ID=Gchil4489.t1|Name=Gchil4489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004426_pilon:505140..506617- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCCCCACTTCCTGTACGGCTTTCGAAGCAGGCTTTTGCTTCTCT
GATCAGCGTTCTGGAAAGCGTTAATTCCCCTCTCGGTGATCTTTCGCGTC
GATTATGGCAATCTCCTTGCGCTAGCTTTTCGACTACCGCAGTGGGTGCT
TCAATTGCTGCCCTCCTTCAAGATGACCTGCTTCCGAACCCCTCTCAACG
GTTAGTCGCCATTTTTGTGCTATATGATATGATTGCTGCCCGTTCTGCTC
CTTCCTCATCTCCTACGTCTGTCTTGGAGCGCTTAATCGCAAGTCCCTTG
TCAATAATACTTTTTGAGCTCATGAGCGACACAAATCCTTATGCCTCGGA
ACAACTTTTCCTCAGTCATTTACTCCGTCTGTCGGAAGACCATCGCTCAC
AGTCGAGTGGTGGCGATCTTCCCACAGACGGTGAGATTGCAAAAACCGCA
GCAGTTGCGCTATATGGGGCACTAGAAGACGCTATTCGCAGTGGTGCTTC
TGCGGCGACGCCGAACATTTCTTCTTTGCGCCACATGTGGGCTACACGGC
ATCCTGAAACACCAGATACTTCGTACGGTTTGAAACCCGTCAGTGCTGTT
GTCCCGGATCCAGATCTTTTTGTAAATTTAGATTCTGGTCAACTTGTTAA
CGAGCTGGGTTCTGTCGTTGCATTAGAAGACTTTAGTCCGTCCTTTGTTC
GTATACCTCCGCCATTCCTCCCAATAGAATTGGAAAGCAAAGAGTTGCGT
TGGATTGACCCGGAACCTCTACATGAGATTATATGGGATCCGGAAATGGG
AATGAAAGATGAGCGTGGAGCCGAACTACGAGAGATCATCTCAAAGGCTA
TAAAAAGCCCAATACCAGAGGCTCAGCGGATGAAAGTTCGCCGAATGCTC
AATGATGATCCGAAGCTTGTTCATCTCTGCGGAATTACGCCGCAGAAATT
ACCAGAACTCGTGAACAACAATGCGTCACTTGCTACAGAAATCCTTCTGA
ACTTGATGTCTTCCACGCAGATGCCAAAGTACCTTGATGCGCTCGTTAAT
ATGGACATGAATCTTCAATCGATGGATATCGTGAGCCGACTTTCAAACAC
TGTCCAATTGCCGAGGGATTTCATGCATACTTACATAAGTAACTGCATGC
GGTCTTGCGGTGATATACCAGATAAGCCCGCCCAGGATCGAAGCGTTCGT
TCTTTTTCCGTGTTTCTTAAGCGCCTTATCAAGAACAGAAACATAGACTT
GCAAGACCTTCTAGTGGAGGTTCAAGAATTTTGTATGGGATACTGCAGGA
TTCGTGAAGTTGCAGATCTCTACAGATCTCTGCAAGTTTCTGTGAAGATG
GAGAGCGCACAATAA
back to top

protein sequence of Gchil4489.t1

>Gchil4489.t1 ID=Gchil4489.t1|Name=Gchil4489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=455bp
MKPPLPVRLSKQAFASLISVLESVNSPLGDLSRRLWQSPCASFSTTAVGA
SIAALLQDDLLPNPSQRLVAIFVLYDMIAARSAPSSSPTSVLERLIASPL
SIILFELMSDTNPYASEQLFLSHLLRLSEDHRSQSSGGDLPTDGEIAKTA
AVALYGALEDAIRSGASAATPNISSLRHMWATRHPETPDTSYGLKPVSAV
VPDPDLFVNLDSGQLVNELGSVVALEDFSPSFVRIPPPFLPIELESKELR
WIDPEPLHEIIWDPEMGMKDERGAELREIISKAIKSPIPEAQRMKVRRML
NDDPKLVHLCGITPQKLPELVNNNASLATEILLNLMSSTQMPKYLDALVN
MDMNLQSMDIVSRLSNTVQLPRDFMHTYISNCMRSCGDIPDKPAQDRSVR
SFSVFLKRLIKNRNIDLQDLLVEVQEFCMGYCRIREVADLYRSLQVSVKM
ESAQ*
back to top

mRNA from alignment at tig00004426_pilon:505140..506617-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4489.t1 ID=Gchil4489.t1|Name=Gchil4489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1478bp|location=Sequence derived from alignment at tig00004426_pilon:505140..506617- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCCCCACTTCCTGTACGGCTTTCGAAGCAGGCTTTTGCTTCTCT
GATCAGCGTTCTGGAAAGCGTTAATTCCCCTCTCGGTGATCTTTCGCGTC
GATTATGGCAATCTCCTTGCGCTAGCTTTTCGACTACCGCAGTGGGTGCT
TCAATTGCTGCCCTCCTTCAAGATGACCTGCTTCCGAACCCCTCTCAACG
GTTAGTCGCCATTTTTGTGCTATATGATATGATTGCTGCCCGTTCTGCTC
CTTCCTCATCTCCTACGTCTGTCTTGGAGCGCTTAATCGCAAGTCCCTTG
TCAATAATACTTTTTGAGCTCATGAGCGACACAAATCCTTATGCCTCGGA
ACAACTTTTCCTCAGTCATTTACTCCGTCTGTCGGAAGACCATCGCTCAC
AGTCGAGTGGTGGCGATCTTCCCACAGACGGTGAGATTGCAAAAACCGCA
GCAGTTGCGCTATATGGGGCACTAGAAGACGCTATTCGCAGTGGTGCTTC
TGCGGCGACGCCGAACATTTCTTCTTTGCGCCACATGTGGGCTACACGGC
ATCCTGAAACACCAGATACTTCGTACGGTTTGAAACCCGTCAGTGCTGTT
GTCCCGGATCCAGATCTTTTTGTAAATTTAGATTCTGGTCAACTTGTTAA
CGAGCTGGGTTCTGTCGTTGCATTAGAAGACTTTAGTCCGTCCTTTGTTC
GTATACCTCCGCCATTCCTCCCAATAGAATTGGAAAGCAAAGAGTTGCGT
TGGATTGACCCGGAACCTCTACATGAGATTATATGGGATCCGGAAATGGG
AATGAAAGATGAGCGTGGAGCCGAACTACGAGAGATCATCTCAAAGGCTA
TAAAAAGCCCAATACCAGAGGCTCAGCGGATGAAAGTTCGCCGAATGCTC
AATGATGATCCGAAGCTTGTTCATCTCTGCGGAATTACGCCGCAGAAATT
ACCAGAACTCGTGAACAACAATGCGTCACTTGCTACAGAAATCCTTCTGA
ACTTGATGTCTTCCACGCAGATGCCAAAGTACCTTGATGCGCTCGTTAAT
ATGGACATGAATCTTCAATCGATGGATATCGTGAGCCGACTTTCAAACAC
TGTCCAATTGCCGAGGGATTTCATGCATACTTACATAAGTAACTGCATGC
GGTCTTGCGGTGATATACCAGATAAGCCCGCCCAGGATCGAAGCGTTCGT
TCTTTTTCCGTGTTTCTTAAGCGCCTTATCAAGAACAGAAACATAGACTT
GCAAGACCTTCTAGTGGAGGTTCAAGAATTTTGTATGGGATACTGCAGGT
AAGAAAACAGTTTGCACTGCTTGAGAAGTCATGCGAAGAAGAAATTTGCT
AACAAAATACTGAGCACCAACCTAATGTATTACATTTTGCTGTGTCCCAT
TTTTGAAACAGGATTCGTGAAGTTGCAGATCTCTACAGATCTCTGCAAGT
TTCTGTGAAGATGGAGAGCGCACAATAA
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:505140..506617-

>Gchil4489.t1 ID=Gchil4489.t1|Name=Gchil4489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00004426_pilon:505140..506617- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCCCCACTTCCTGTACGGCTTTCGAAGCAGGCTTTTGCTTCTCT
GATCAGCGTTCTGGAAAGCGTTAATTCCCCTCTCGGTGATCTTTCGCGTC
GATTATGGCAATCTCCTTGCGCTAGCTTTTCGACTACCGCAGTGGGTGCT
TCAATTGCTGCCCTCCTTCAAGATGACCTGCTTCCGAACCCCTCTCAACG
GTTAGTCGCCATTTTTGTGCTATATGATATGATTGCTGCCCGTTCTGCTC
CTTCCTCATCTCCTACGTCTGTCTTGGAGCGCTTAATCGCAAGTCCCTTG
TCAATAATACTTTTTGAGCTCATGAGCGACACAAATCCTTATGCCTCGGA
ACAACTTTTCCTCAGTCATTTACTCCGTCTGTCGGAAGACCATCGCTCAC
AGTCGAGTGGTGGCGATCTTCCCACAGACGGTGAGATTGCAAAAACCGCA
GCAGTTGCGCTATATGGGGCACTAGAAGACGCTATTCGCAGTGGTGCTTC
TGCGGCGACGCCGAACATTTCTTCTTTGCGCCACATGTGGGCTACACGGC
ATCCTGAAACACCAGATACTTCGTACGGTTTGAAACCCGTCAGTGCTGTT
GTCCCGGATCCAGATCTTTTTGTAAATTTAGATTCTGGTCAACTTGTTAA
CGAGCTGGGTTCTGTCGTTGCATTAGAAGACTTTAGTCCGTCCTTTGTTC
GTATACCTCCGCCATTCCTCCCAATAGAATTGGAAAGCAAAGAGTTGCGT
TGGATTGACCCGGAACCTCTACATGAGATTATATGGGATCCGGAAATGGG
AATGAAAGATGAGCGTGGAGCCGAACTACGAGAGATCATCTCAAAGGCTA
TAAAAAGCCCAATACCAGAGGCTCAGCGGATGAAAGTTCGCCGAATGCTC
AATGATGATCCGAAGCTTGTTCATCTCTGCGGAATTACGCCGCAGAAATT
ACCAGAACTCGTGAACAACAATGCGTCACTTGCTACAGAAATCCTTCTGA
ACTTGATGTCTTCCACGCAGATGCCAAAGTACCTTGATGCGCTCGTTAAT
ATGGACATGAATCTTCAATCGATGGATATCGTGAGCCGACTTTCAAACAC
TGTCCAATTGCCGAGGGATTTCATGCATACTTACATAAGTAACTGCATGC
GGTCTTGCGGTGATATACCAGATAAGCCCGCCCAGGATCGAAGCGTTCGT
TCTTTTTCCGTGTTTCTTAAGCGCCTTATCAAGAACAGAAACATAGACTT
GCAAGACCTTCTAGTGGAGGTTCAAGAATTTTGTATGGGATACTGCAGGA
TTCGTGAAGTTGCAGATCTCTACAGATCTCTGCAAGTTTCTGTGAAGATG
GAGAGCGCACAATAA
back to top