Gchil2287.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2287.t1
Unique NameGchil2287.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length492
Homology
[Close]
BLAST of Gchil2287.t1 vs. uniprot
Match: A0A2V3IMI9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMI9_9FLOR)

HSP 1 Score: 213 bits (541), Expect = 6.160e-58
Identity = 149/407 (36.61%), Postives = 211/407 (51.84%), Query Frame = 0 
Query:  105 HRSSHSRKR----NKSSCLLRKKGPKYKRLRPLPCTNPLYRKVLDFRYYRLKRGGKKRSGRETAKVKDHFTRLKIGLNDLVFDGKTHILVIEFFNRFVAETDTLEMRR--------------------------------VTSWPVVVQYLLRNYVISNAIRQAILDLRDVTQKRGKGEAEYSSRLDRMATRCGNVHSTEDKITLLTDGLDPTIKSLVAGFREKHEGTPFLELDQFGQAEGEADRAREVTRNNT-KLVHSRESS-----FARHDNQSQHDAIHLKDYWHSSVPTEDLPHS-ESQEQESLMAMEDRRPVPPASMQPPERGFNNRKTGWLDTQIA-SRSQPRSAASHEALICYMCYGRHHLSSECTLPANDLVRVLTNYETLSE-ERTRVPAGTYSKVK 466
            HRS  SR +       +   R+KG K+  L+ L  TN LYR++L +RYYRL+    +R+ R T ++KD   RL++ L    F G+  IL+++F  RFVAE D L M                                  VT WP  VQYLLR+Y   NAI+ AIL LRD  QK  + E  YS+RL +   RCGNV+S +++ T+  DGLDPTI++LVA  RE      +LEL QF QAEG+A RAR+ T++ + K++H            R  +   +D +HL     SSVPT +LP + E    +   AM     VP  ++ P   G   ++ GW D     S  +P  A     +IC++CY   H+S+ C L   D+ +V+ NYE L+  E+ RVPA  Y + +
Sbjct:  230 HRSRASRSKYTEATHGAVRTREKGRKHLGLKELKPTNLLYRRLLSYRYYRLEDSSMERTPRGTGRLKDCIKRLELTLRKHQFTGEDPILILDFLARFVAEADILGMSEAQAYIALPYFLRGMAEDQFNSVRGSSRATEGGVTCWPEAVQYLLRSYATGNAIQAAILALRDTRQKSEESETAYSTRLTKAFHRCGNVYSAQERCTMFVDGLDPTIRTLVARHREDRRRITYLELVQFAQAEGDALRARKGTKHRSGKVLHLEARQVPSPPLTRRTDHGMYDNMHLLQS-DSSVPTTELPSTTEPSTGDVDPAMYAGNHVPGLTV-PYSSGTRTQRPGWKDPYPPRSDRRPHIADQLRHIICHLCYKPGHVSTNCYLLMKDMAKVIVNYEALTPAEKERVPASAYLRAR 634
The following BLAST results are available for this feature:
BLAST of Gchil2287.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IMI9_9FLOR6.160e-5836.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 204..279
e-value: 2.2E-5
score: 24.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:859696..861474 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1Gchil2287.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004419_pilon 859696..861474 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2287.t1 ID=Gchil2287.t1|Name=Gchil2287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=492bp
MAIITEEVERLRREQGVLARREEKDPMRAVVGTLREDLNQVMKTHGNAPE
ALPGLTVDVEEILTRVNPRLERLEAVVHAKITVTQVVKDENEFPLREERS
SDDDHRSSHSRKRNKSSCLLRKKGPKYKRLRPLPCTNPLYRKVLDFRYYR
LKRGGKKRSGRETAKVKDHFTRLKIGLNDLVFDGKTHILVIEFFNRFVAE
TDTLEMRRVTSWPVVVQYLLRNYVISNAIRQAILDLRDVTQKRGKGEAEY
SSRLDRMATRCGNVHSTEDKITLLTDGLDPTIKSLVAGFREKHEGTPFLE
LDQFGQAEGEADRAREVTRNNTKLVHSRESSFARHDNQSQHDAIHLKDYW
HSSVPTEDLPHSESQEQESLMAMEDRRPVPPASMQPPERGFNNRKTGWLD
TQIASRSQPRSAASHEALICYMCYGRHHLSSECTLPANDLVRVLTNYETL
SEERTRVPAGTYSKVKGYLCYHPRRQSGAPVTKDIGEPQDN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom