Gchil2287.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2287.t1
Unique NameGchil2287.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:859696..861474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2287Gchil2287Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 859696..861474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1Gchil2287.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 859696..861474 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1.stop1Gchil2287.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 859696..859698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1.CDS1Gchil2287.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 859696..860198 -
Gchil2287.t1.CDS2Gchil2287.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 860274..860627 -
Gchil2287.t1.CDS3Gchil2287.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 860724..861040 -
Gchil2287.t1.CDS4Gchil2287.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 861173..861474 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1.exon1Gchil2287.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 859696..860198 -
Gchil2287.t1.exon2Gchil2287.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 860274..860627 -
Gchil2287.t1.exon3Gchil2287.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 860724..861040 -
Gchil2287.t1.exon4Gchil2287.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 861173..861474 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1.intron1Gchil2287.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 860199..860273 -
Gchil2287.t1.intron2Gchil2287.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 860628..860723 -
Gchil2287.t1.intron3Gchil2287.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 861041..861172 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2287.t1.start1Gchil2287.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 861472..861474 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2287.t1 ID=Gchil2287.t1|Name=Gchil2287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp
MAIITEEVERLRREQGVLARREEKDPMRAVVGTLREDLNQVMKTHGNAPE
ALPGLTVDVEEILTRVNPRLERLEAVVHAKITVTQVVKDENEFPLREERS
SDDDHRSSHSRKRNKSSCLLRKKGPKYKRLRPLPCTNPLYRKVLDFRYYR
LKRGGKKRSGRETAKVKDHFTRLKIGLNDLVFDGKTHILVIEFFNRFVAE
TDTLEMRRVTSWPVVVQYLLRNYVISNAIRQAILDLRDVTQKRGKGEAEY
SSRLDRMATRCGNVHSTEDKITLLTDGLDPTIKSLVAGFREKHEGTPFLE
LDQFGQAEGEADRAREVTRNNTKLVHSRESSFARHDNQSQHDAIHLKDYW
HSSVPTEDLPHSESQEQESLMAMEDRRPVPPASMQPPERGFNNRKTGWLD
TQIASRSQPRSAASHEALICYMCYGRHHLSSECTLPANDLVRVLTNYETL
SEERTRVPAGTYSKVKGYLCYHPRRQSGAPVTKDIGEPQDN*
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spliced messenger RNA

>Gchil2287.t1 ID=Gchil2287.t1|Name=Gchil2287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004419_pilon:859696..861474- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATCATTACCGAAGAAGTCGAGCGCTTGCGGCGCGAACAAGGCGT
ACTCGCTCGTCGAGAAGAAAAGGACCCGATGCGTGCGGTTGTGGGAACCC
TGCGAGAGGATTTGAACCAAGTAATGAAAACACATGGTAATGCTCCGGAG
GCTTTACCGGGCCTGACCGTTGACGTTGAGGAAATCCTCACTCGAGTAAA
CCCTCGTCTGGAACGCCTGGAGGCAGTGGTGCATGCGAAGATTACTGTTA
CTCAAGTCGTGAAAGACGAAAATGAATTCCCCTTGAGGGAAGAGCGATCG
AGTGATGATGATCATCGTAGTTCCCATTCTAGGAAGAGGAACAAGTCTTC
TTGTCTATTAAGGAAGAAGGGTCCGAAGTACAAGCGTCTCAGGCCACTTC
CTTGTACGAATCCGTTGTATCGGAAAGTCCTGGACTTCCGGTATTATCGC
CTCAAGAGAGGAGGAAAGAAGCGATCGGGTCGCGAAACCGCAAAGGTTAA
GGACCACTTTACGCGGTTGAAGATTGGACTGAATGACCTAGTCTTTGATG
GCAAAACGCACATTCTTGTTATCGAGTTCTTTAATCGTTTCGTTGCAGAG
ACGGACACCTTAGAAATGAGAAGAGTGACGTCCTGGCCGGTGGTAGTTCA
GTACTTACTGCGAAACTATGTCATATCGAACGCAATCCGACAGGCTATCC
TGGATCTTCGTGATGTAACCCAGAAACGTGGTAAGGGAGAAGCAGAATAC
AGCTCGAGGCTTGACAGAATGGCCACGCGCTGTGGAAACGTTCACTCAAC
CGAAGACAAGATTACCTTGCTAACGGATGGGCTCGATCCCACTATCAAAT
CTCTAGTGGCTGGATTTCGAGAAAAGCATGAAGGAACCCCATTTCTGGAG
TTGGATCAGTTTGGGCAAGCTGAAGGTGAAGCGGACAGAGCTCGCGAAGT
TACACGGAACAACACAAAGCTTGTTCACTCTCGAGAGTCTTCGTTTGCTA
GACACGATAACCAATCGCAACACGATGCTATTCACCTTAAGGATTATTGG
CACTCATCGGTGCCCACAGAGGATCTACCTCACTCAGAATCCCAGGAGCA
AGAATCTCTAATGGCTATGGAGGATAGACGCCCAGTACCCCCTGCGTCCA
TGCAGCCCCCGGAAAGAGGATTCAATAATAGAAAAACTGGATGGCTGGAC
ACGCAAATAGCATCTCGATCACAACCGAGATCGGCAGCAAGCCATGAAGC
GTTAATTTGCTATATGTGCTATGGCCGTCATCATCTGTCTTCAGAATGCA
CCCTTCCTGCAAACGATTTAGTTCGCGTCCTCACGAATTACGAGACTCTC
TCAGAGGAAAGGACCCGAGTACCGGCTGGTACCTACTCGAAGGTCAAAGG
ATACCTTTGCTACCATCCTCGACGTCAATCTGGAGCTCCAGTGACTAAGG
ACATTGGAGAACCACAGGATAATTAG
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protein sequence of Gchil2287.t1

>Gchil2287.t1 ID=Gchil2287.t1|Name=Gchil2287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=492bp
MAIITEEVERLRREQGVLARREEKDPMRAVVGTLREDLNQVMKTHGNAPE
ALPGLTVDVEEILTRVNPRLERLEAVVHAKITVTQVVKDENEFPLREERS
SDDDHRSSHSRKRNKSSCLLRKKGPKYKRLRPLPCTNPLYRKVLDFRYYR
LKRGGKKRSGRETAKVKDHFTRLKIGLNDLVFDGKTHILVIEFFNRFVAE
TDTLEMRRVTSWPVVVQYLLRNYVISNAIRQAILDLRDVTQKRGKGEAEY
SSRLDRMATRCGNVHSTEDKITLLTDGLDPTIKSLVAGFREKHEGTPFLE
LDQFGQAEGEADRAREVTRNNTKLVHSRESSFARHDNQSQHDAIHLKDYW
HSSVPTEDLPHSESQEQESLMAMEDRRPVPPASMQPPERGFNNRKTGWLD
TQIASRSQPRSAASHEALICYMCYGRHHLSSECTLPANDLVRVLTNYETL
SEERTRVPAGTYSKVKGYLCYHPRRQSGAPVTKDIGEPQDN*
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mRNA from alignment at tig00004419_pilon:859696..861474-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2287.t1 ID=Gchil2287.t1|Name=Gchil2287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00004419_pilon:859696..861474- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGATCATTACCGAAGAAGTCGAGCGCTTGCGGCGCGAACAAGGCGT
ACTCGCTCGTCGAGAAGAAAAGGACCCGATGCGTGCGGTTGTGGGAACCC
TGCGAGAGGATTTGAACCAAGTAATGAAAACACATGGTAATGCTCCGGAG
GCTTTACCGGGCCTGACCGTTGACGTTGAGGAAATCCTCACTCGAGTAAA
CCCTCGTCTGGAACGCCTGGAGGCAGTGGTGCATGCGAAGATTACTGTTA
CTCAAGTCGTGAAAGACGAAAATGAATTCCCCTTGAGGGAAGAGCGATCG
AGGTATTCGAAGTCAACACGTCGCAAGTAGAGAAAGTCACAGCCGGACAC
TAGCGATGATTAATCAGGATCTAAGAATGAGGACTCCGGTGCTGACGAAT
CTGACTCGTCGGATATGTCGACTGACGACGCCAGTGATGATGATCATCGT
AGTTCCCATTCTAGGAAGAGGAACAAGTCTTCTTGTCTATTAAGGAAGAA
GGGTCCGAAGTACAAGCGTCTCAGGCCACTTCCTTGTACGAATCCGTTGT
ATCGGAAAGTCCTGGACTTCCGGTATTATCGCCTCAAGAGAGGAGGAAAG
AAGCGATCGGGTCGCGAAACCGCAAAGGTTAAGGACCACTTTACGCGGTT
GAAGATTGGACTGAATGACCTAGTCTTTGATGGCAAAACGCACATTCTTG
TTATCGAGTTCTTTAATCGTTTCGTTGCAGAGACGGACACCTTAGAAATG
AGTGAACCTCAAGCATAGGTTTCAGTACCACATTTCCTAACGGGTTTTGC
GTCCGAGCAATATCGTTCCGTTTGCGGATCCCTGACCGCTGACGAAGGAA
GAGTGACGTCCTGGCCGGTGGTAGTTCAGTACTTACTGCGAAACTATGTC
ATATCGAACGCAATCCGACAGGCTATCCTGGATCTTCGTGATGTAACCCA
GAAACGTGGTAAGGGAGAAGCAGAATACAGCTCGAGGCTTGACAGAATGG
CCACGCGCTGTGGAAACGTTCACTCAACCGAAGACAAGATTACCTTGCTA
ACGGATGGGCTCGATCCCACTATCAAATCTCTAGTGGCTGGATTTCGAGA
AAAGCATGAAGGAACCCCATTTCTGGAGTTGGATCAGTTTGGGCAAGCTG
AAGGTGAAGCGGACAGAGCTCGCGAAGTTACACGGAACAACACAAAGCTT
GGTGCATCCAAAGCAGAGGAAGGACGTAAACAAACTGCCAAACCCACTTG
AAAGGTGTTGCACCTGGAATCTCCAGTTCACTCTCGAGAGTCTTCGTTTG
CTAGACACGATAACCAATCGCAACACGATGCTATTCACCTTAAGGATTAT
TGGCACTCATCGGTGCCCACAGAGGATCTACCTCACTCAGAATCCCAGGA
GCAAGAATCTCTAATGGCTATGGAGGATAGACGCCCAGTACCCCCTGCGT
CCATGCAGCCCCCGGAAAGAGGATTCAATAATAGAAAAACTGGATGGCTG
GACACGCAAATAGCATCTCGATCACAACCGAGATCGGCAGCAAGCCATGA
AGCGTTAATTTGCTATATGTGCTATGGCCGTCATCATCTGTCTTCAGAAT
GCACCCTTCCTGCAAACGATTTAGTTCGCGTCCTCACGAATTACGAGACT
CTCTCAGAGGAAAGGACCCGAGTACCGGCTGGTACCTACTCGAAGGTCAA
AGGATACCTTTGCTACCATCCTCGACGTCAATCTGGAGCTCCAGTGACTA
AGGACATTGGAGAACCACAGGATAATTAG
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Coding sequence (CDS) from alignment at tig00004419_pilon:859696..861474-

>Gchil2287.t1 ID=Gchil2287.t1|Name=Gchil2287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00004419_pilon:859696..861474- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGATCATTACCGAAGAAGTCGAGCGCTTGCGGCGCGAACAAGGCGT
ACTCGCTCGTCGAGAAGAAAAGGACCCGATGCGTGCGGTTGTGGGAACCC
TGCGAGAGGATTTGAACCAAGTAATGAAAACACATGGTAATGCTCCGGAG
GCTTTACCGGGCCTGACCGTTGACGTTGAGGAAATCCTCACTCGAGTAAA
CCCTCGTCTGGAACGCCTGGAGGCAGTGGTGCATGCGAAGATTACTGTTA
CTCAAGTCGTGAAAGACGAAAATGAATTCCCCTTGAGGGAAGAGCGATCG
AGTGATGATGATCATCGTAGTTCCCATTCTAGGAAGAGGAACAAGTCTTC
TTGTCTATTAAGGAAGAAGGGTCCGAAGTACAAGCGTCTCAGGCCACTTC
CTTGTACGAATCCGTTGTATCGGAAAGTCCTGGACTTCCGGTATTATCGC
CTCAAGAGAGGAGGAAAGAAGCGATCGGGTCGCGAAACCGCAAAGGTTAA
GGACCACTTTACGCGGTTGAAGATTGGACTGAATGACCTAGTCTTTGATG
GCAAAACGCACATTCTTGTTATCGAGTTCTTTAATCGTTTCGTTGCAGAG
ACGGACACCTTAGAAATGAGAAGAGTGACGTCCTGGCCGGTGGTAGTTCA
GTACTTACTGCGAAACTATGTCATATCGAACGCAATCCGACAGGCTATCC
TGGATCTTCGTGATGTAACCCAGAAACGTGGTAAGGGAGAAGCAGAATAC
AGCTCGAGGCTTGACAGAATGGCCACGCGCTGTGGAAACGTTCACTCAAC
CGAAGACAAGATTACCTTGCTAACGGATGGGCTCGATCCCACTATCAAAT
CTCTAGTGGCTGGATTTCGAGAAAAGCATGAAGGAACCCCATTTCTGGAG
TTGGATCAGTTTGGGCAAGCTGAAGGTGAAGCGGACAGAGCTCGCGAAGT
TACACGGAACAACACAAAGCTTGTTCACTCTCGAGAGTCTTCGTTTGCTA
GACACGATAACCAATCGCAACACGATGCTATTCACCTTAAGGATTATTGG
CACTCATCGGTGCCCACAGAGGATCTACCTCACTCAGAATCCCAGGAGCA
AGAATCTCTAATGGCTATGGAGGATAGACGCCCAGTACCCCCTGCGTCCA
TGCAGCCCCCGGAAAGAGGATTCAATAATAGAAAAACTGGATGGCTGGAC
ACGCAAATAGCATCTCGATCACAACCGAGATCGGCAGCAAGCCATGAAGC
GTTAATTTGCTATATGTGCTATGGCCGTCATCATCTGTCTTCAGAATGCA
CCCTTCCTGCAAACGATTTAGTTCGCGTCCTCACGAATTACGAGACTCTC
TCAGAGGAAAGGACCCGAGTACCGGCTGGTACCTACTCGAAGGTCAAAGG
ATACCTTTGCTACCATCCTCGACGTCAATCTGGAGCTCCAGTGACTAAGG
ACATTGGAGAACCACAGGATAATTAG
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