Gchil5538.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5538.t1
Unique NameGchil5538.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length378
Homology
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A2V3J9E0_9FLOR (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9E0_9FLOR)

HSP 1 Score: 564 bits (1454), Expect = 2.490e-201
Identity = 274/303 (90.43%), Postives = 289/303 (95.38%), Query Frame = 0
Query:   75 MSSQISVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSPKKLVASGGQDRAVLCWNLKDPSNEPMRFEGHIDSVNSVDWNSAGDNLLTASSDGMACVWDERQNHWQAAVTIPTGLHVYSAVFAASGSVLVMSTEMMDVRAFDLRAETKTLWRQDGYKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELNVAL 377
            M+S+I+VKKRWQLSRYVDAVVSAGGGNAVAATS +TG +WDG VHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNS+VNSVAVSS KKLVASGGQD+AVLCWNL +PSNEPMRFEGHIDSVNSVDWN+ GDNLLTASSDGMACVWDERQNHWQAA+TIPTGL VYSAVFAASG+ +VMSTEMMDV AFDLRAETK LWR+ GY G SHCLR SPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHH+DYVRSVAWDSQAEGRLFSGSWDKSVAELNV+L
Sbjct:    1 MTSKITVKKRWQLSRYVDAVVSAGGGNAVAATSQITGIVWDGCVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSNVNSVAVSSSKKLVASGGQDKAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTTGDNLLTASSDGMACVWDERQNHWQAAITIPTGLDVYSAVFAASGTTMVMSTEMMDVVAFDLRAETKALWRKGGYTGASHCLRASPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVSL 303          
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A7S0ZGB4_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGB4_9RHOD)

HSP 1 Score: 296 bits (759), Expect = 7.110e-96
Identity = 147/296 (49.66%), Postives = 204/296 (68.92%), Query Frame = 0
Query:   79 ISVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSPKKLVASGGQDRAVLCWNLKDPSNEPMRFEGHIDSVNSVDWNSAGDNLLTASSDGMACVWDERQNH-WQAAVTIPTGLHVYSAVFAASGSVLVMSTEMMDVRAFDLRAETKTLWRQDGYKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAEL 373
            +SV++ W++ R VDAVV+AGGGN VAATS LTGSIWDGRV GL G+G +EAEI VE G+ADLC + EGQ++A  DDG VR +HSGG + L GGHNS VNSV+++      A+ G DR +  ++L+  S EP RFE H DSVNSVDW S G+ LL+ASSDG  CVWD R     Q+++ +  G   Y AVF+ +G  +++ TE  ++  +D+R+  + LW + G KG    L+ SPHN   VA  ++ P+V +++V +G +    +HH D+VR+++WD Q  GRL++GSWDK+V EL
Sbjct:    1 MSVQQEWKVKRCVDAVVAAGGGNVVAATSNLTGSIWDGRVFGLTGSGLVEAEILVECGMADLCAIGEGQYLAACDDGMVRAIHSGGAMVLGGGHNSVVNSVSITGTTG--ATAGADRVIQFYDLEKHSTEPTRFEAHADSVNSVDW-SGGNKLLSASSDGTVCVWDARNRPICQSSLAVHVGSVAYVAVFSMNGDRVLIGTEKNELLCYDIRSTMQPLWSEIGLKGPVRNLKQSPHNASQVAAGTDAPSVLIINVESGKIERTMYHHRDFVRALSWDKQVPGRLYTGSWDKTVVEL 293          
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A6T6DDA3_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DDA3_9RHOD)

HSP 1 Score: 243 bits (620), Expect = 1.730e-75
Identity = 118/253 (46.64%), Postives = 165/253 (65.22%), Query Frame = 0
Query:  122 MGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSPKKLVASGGQDRAVLCWNLKDPSNEPMRFEGHIDSVNSVDWNSAGDNLLTASSDGMACVWDERQNHWQAAVTIPTGLHVYSAVFAASGSVLVMSTEMMDVRAFDLRAETKT-LWRQDGYKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNGNVLGKSF-HHSDYVRSVAWDSQAEGRLFSGSWDKSVAE 372
            M  G+IEAEIEV+ G+ADLC L+EGQF+A  DDG+VRV+HSGGVLPLP  H+    +VAVS  +K+VASGG D  +LCW+L +P+N+P R EGH D V +VDW+  G+ LL++S DG  CVWD R   WQ    +  G    +A F  +G  +++ TE +++   DLR +  T +WR+   K     +R  PHN  I A++ + PAV +L V NG+   K    H+D++R ++WD Q  G+L +GSWDK+V E
Sbjct:    1 MATGEIEAEIEVDCGVADLCGLEEGQFVAACDDGTVRVIHSGGVLPLPSCHDDMTITVAVSPERKMVASGGADGVILCWDLHEPANDPYRQEGHKDGVTAVDWS--GNILLSSSKDGRICVWDARNKPWQPVARVKVGSMALTAAFCRNGERILVGTENLEIHGHDLRGQAMTPMWREK-VKAPVRKIRPCPHNSNICAISMDLPAVHILQVDNGDEFDKPILGHTDFIRGLSWDPQYAGKLLTGSWDKTVKE 250          
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A5J4Z1R0_PORPP (Peroxisomal targeting signal 2 receptor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1R0_PORPP)

HSP 1 Score: 243 bits (621), Expect = 5.600e-75
Identity = 139/301 (46.18%), Postives = 183/301 (60.80%), Query Frame = 0
Query:   83 KRWQLSRYVDAVVSAGGG-NAVAATSMLTGSIWDGRVHGL-MGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSPKKLVASGGQDRAVLCWNLKDPSN----EPMRFEGHIDSVNSVDWNSAGDNLLTASSDGMACVWDERQ-NHWQAAVTIPTGLHVYSAVFAASGSVLVMSTEMMDVRAFDLRA-ETKTLWRQDGYKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELNV 375
            K W+LS  VDAV +AG G N V ATS LTGS+W+G+V+G+ +GA Q  AEI +E  +ADLC + EGQF+AG DDG VR+VH G  +PL G HN  V +VA S      AS G DR VL  +L         E  R   H  +VNSVDW+  G  LLTAS DG   VWD R   + +   +   G   Y AVF  +G  +V  TE  ++ AFDLRA  T  LW +DG++G    ++  PHN  +VAVA++ P+V  + +  G V  + F+H D+VR++AWD    GRLFSGSWD++V E+ V
Sbjct:    5 KEWRLSMAVDAVAAAGDGKNIVVATSNLTGSVWEGKVYGIGLGASQPLAEIPIECSLADLCPIREGQFLAGCDDGYVRIVHEGAPIPLLGAHNGPVTAVATSGD--TAASAGTDRMVLLHDLVRLMELNGIEATRLTAHTSAVNSVDWS--GPMLLTASGDGTVRVWDTRNLANAKPTYSAAVGSMAYCAVFCRNGERIVAGTEAHELVAFDLRAGATTALWTEDGFRGPVRKIKACPHNPGLVAVATDTPSVATVLIDTGKVDKQIFNHRDFVRALAWDETTPGRLFSGSWDRTVCEIKV 301          
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A1X6NVM9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVM9_PORUM)

HSP 1 Score: 169 bits (428), Expect = 2.790e-45
Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 0
Query:   85 WQLSRYVDAVVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHN--SSVNSVAVSSPK-------------------------------KLVASGGQDRAVLCWNLKDPSNEPMRFEGHIDSVNSVDWN-------SAGDNLLTASSDGMACVWDER 246
            W+L R+VDAV+ AG GNAVAATS LTG++WDGRV GL+  GQ EA++EVE G++ L  L EGQFIAG DDG VRVVHSGG+LPLPGGH+  SS+   A+SS                                 + VASGG D   L W++  P+  P R  GH  +V +VD+        S G  LLTAS DG A VWD+R
Sbjct:   15 WRLDRHVDAVIYAGDGNAVAATSSLTGAVWDGRVIGLIRGGQTEAQLEVEVGLSSLATLAEGQFIAGGDDGVVRVVHSGGILPLPGGHDGGSSICVAALSSSPLTSPGGDAXXXXXXXXXXXXXXXXXXDAGTVQRVASGGSDGVALVWDVASPAAAPSRIIGHSCAVTAVDFPPPSSLVASRGGGLLTASQDGRAAVWDDR 216          
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A1B6DLS7_9HEMI (Uncharacterized protein n=2 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DLS7_9HEMI)

HSP 1 Score: 76.6 bits (187), Expect = 6.220e-12
Identity = 74/260 (28.46%), Postives = 121/260 (46.54%), Query Frame = 0
Query:  132 EVETGIADLCCLDEGQ-FIAGADDGSVRVV--------HSGGVLP--LPGGHNSSVNSVAVSSPKKLVASGGQDRAVLCWNLKDPSNEPMRFEGHIDSVNSVDWNSAGDNLLTASS--DGMACVWDERQNHWQAAVTIPTGLHVYSAVF--AASGSVLVMSTEMMDVRAFDLRAETKTLWRQDGYKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNG-NVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELNV 375
            + +T ++D   LD  Q  I G D G+V V         HS  ++       H+++V ++AVSS KK VASGG D  +  WN +D   +      H   V ++ +     N   ASS  DG   +WD RQ    A V   T     SA+   +   +VL + + + ++   DLR  +  +  +   + +   L I+ ++  + AVA +     +   S+  N++     H+D+VR +AW  + +  LFS  WDK V + NV
Sbjct:   73 DCKTSVSDGKFLDSKQKIIVGEDSGAVTVYTLTELEDDHSFHLVSESTRNDHDNTVLTIAVSSDKKQVASGGMDLCIKIWNTEDLLIKNNYQLAHCHHVTNLAFRPQDSNYTFASSSLDGTVLLWDSRQFE-PATVLRDTPNEGLSALAWNSVDDNVLAVGSVIGNIDLIDLRTVSNVMESRPFNRAIHKLLYINSNS--LAAVAESHEVKVVQHSSDKLNIVYNDERHNDFVRGLAWHPKMKC-LFSCGWDKQVIKHNV 328          
BLAST of Gchil5538.t1 vs. uniprot
Match: A0A4D6MZ73_VIGUN (Ca2+/calmodulin-dependent protein kinase n=3 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6MZ73_VIGUN)

HSP 1 Score: 61.6 bits (148), Expect = 1.200e-6
Identity = 54/187 (28.88%), Postives = 81/187 (43.32%), Query Frame = 0
Query:  173 NSSVNSVAVSSPKKLVASGGQDRAVLCWNLKDPSNEPMRFEGHIDSVNSVDWNSAGDNLLTASSDGMACVWDERQNHWQAAVTIPTGLHVYSAVFAASGSVLVMSTE-MMDVRAFDLRAETKTLWRQDGYKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAE 358
            NS V     SS  KL+AS G D+ V+ WN++    E    E H  +V  V +      L T+SSD    +WD     +   V I    HV S  F  + + L  S + + ++R +++   +       G+KG S  +R  P    ++A AS    V+L DV     +     HS  V  V WD   +
Sbjct:  388 NSKVVCCHFSSDGKLLASAGNDKKVVVWNMETLQTESTA-EEHSLTVTDVRFRPNSTQLATSSSDSTVRLWDAADPLFSLQVHIGHTSHVASLDFHPTKNDLFCSCDDINEIRFWNINQYSSI----QGFKGGSTQVRFQPRVGHLLAAASGS-FVSLFDVETCMQMHTFQGHSAEVHFVCWDPNGD 568          
The following BLAST results are available for this feature:
BLAST of Gchil5538.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J9E0_9FLOR2.490e-20190.43Katanin p80 WD40 repeat-containing subunit B1 n=1 ... [more]
A0A7S0ZGB4_9RHOD7.110e-9649.66Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6T6DDA3_9RHOD1.730e-7546.64Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4Z1R0_PORPP5.600e-7546.18Peroxisomal targeting signal 2 receptor n=1 Tax=Po... [more]
A0A1X6NVM9_PORUM2.790e-4548.02Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1B6DLS7_9HEMI6.220e-1228.46Uncharacterized protein n=2 Tax=Clastoptera arizon... [more]
A0A4D6MZ73_VIGUN1.200e-628.88Ca2+/calmodulin-dependent protein kinase n=3 Tax=V... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 205..244
e-value: 1.8E-7
score: 40.8
coord: 162..201
e-value: 0.0046
score: 26.2
coord: 291..331
e-value: 270.0
score: 1.6
coord: 124..161
e-value: 25.0
score: 8.2
coord: 335..374
e-value: 0.25
score: 20.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 212..244
e-value: 1.3E-4
score: 22.7
coord: 170..201
e-value: 2.8E-4
score: 21.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 169..210
score: 11.210233
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 212..244
score: 13.248743
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 88..376
e-value: 2.4E-46
score: 160.1
NoneNo IPR availablePANTHERPTHR46853METHYLOSOME PROTEIN 50coord: 78..373
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..377
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..52
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 212..244
score: 10.996502
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 169..203
score: 9.335602
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 137..371

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2354175..2357529 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5538.t1Gchil5538.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2354175..2357529 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5538.t1 ID=Gchil5538.t1|Name=Gchil5538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=378bp
MMKCLYLICEEDPYTFHKRAGLDQYVLLPVEVSDLSVEVAIWIYYWLINQ
LELWKAVVSPGVLSAVIVVAPSVTMSSQISVKKRWQLSRYVDAVVSAGGG
NAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIA
GADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSPKKLVASGGQDRAVLCW
NLKDPSNEPMRFEGHIDSVNSVDWNSAGDNLLTASSDGMACVWDERQNHW
QAAVTIPTGLHVYSAVFAASGSVLVMSTEMMDVRAFDLRAETKTLWRQDG
YKGVSHCLRISPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRS
VAWDSQAEGRLFSGSWDKSVAELNVAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf