Gchil5475.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5475.t1
Unique NameGchil5475.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2025359..2026045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1500259.JQLD01000001_gene3533
Preferred nameruvX
PFAMsRuvX
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07447
GOsGO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue7.68e-14
EggNOG OGsCOG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,2U98Y@28211|Alphaproteobacteria,4B8BN@82115|Rhizobiaceae
DescriptionCould be a nuclease involved in processing of the 5'-end of pre-16S rRNA
COG categoryJ
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5475Gchil5475Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2025359..2026045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1Gchil5475.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2025359..2026045 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1.start1Gchil5475.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2025359..2025361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1.CDS1Gchil5475.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2025359..2025793 +
Gchil5475.t1.CDS2Gchil5475.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2025935..2026045 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1.exon1Gchil5475.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2025359..2025793 +
Gchil5475.t1.exon2Gchil5475.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2025935..2026045 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1.intron1Gchil5475.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2025794..2025934 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1.stop1Gchil5475.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2026043..2026045 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5475.t1 ID=Gchil5475.t1|Name=Gchil5475.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRR
RSVLSDVKRLRLLASKSKAECAVVGMPRAPEGADCRALQDFVRVYSQRVL
AESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAAL
ILQDVLDAMKRLLDEEGRKMKGTLANTGCPR*
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spliced messenger RNA

>Gchil5475.t1 ID=Gchil5475.t1|Name=Gchil5475.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004418_pilon:2025359..2026045+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAATCTGAACTACAGCGTTTCTACGCTCACGTAAAGCAAAGCGG
TGGGCCTCTGGTAGGCATGGACGTTGGCACGCGCCACATCGGCTTGGCCT
TATCCGATGATGCGCGTATAATCTCGTTTCCTCACAGTGCTTTCCGCCGA
AGAAGCGTTTTATCCGACGTTAAGCGGCTGCGGCTTTTGGCCTCAAAATC
CAAGGCAGAATGCGCCGTTGTGGGAATGCCGCGCGCTCCGGAGGGGGCCG
ACTGTCGGGCGCTACAAGACTTTGTGCGGGTATATTCTCAGCGCGTTCTG
GCTGAAAGTGGGTTCGGTGCGCTTGCCTACTGGGACGAGAGTTTCACGAC
TGTGTTGGCGAAAGATGGTTTCATGACGACGGCGAAAAAAAGCGAACGGA
ATGACAGAACGTTGCGGAAAAAAAGAGTTGACGCGGGCGCTGCCGCATTG
ATTCTCCAAGACGTGTTGGATGCGATGAAACGACTGTTGGACGAGGAAGG
AAGGAAGATGAAAGGCACCTTAGCGAATACGGGTTGCCCCAGGTAA
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protein sequence of Gchil5475.t1

>Gchil5475.t1 ID=Gchil5475.t1|Name=Gchil5475.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRR
RSVLSDVKRLRLLASKSKAECAVVGMPRAPEGADCRALQDFVRVYSQRVL
AESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAAL
ILQDVLDAMKRLLDEEGRKMKGTLANTGCPR*
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mRNA from alignment at tig00004418_pilon:2025359..2026045+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5475.t1 ID=Gchil5475.t1|Name=Gchil5475.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00004418_pilon:2025359..2026045+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAAATCTGAACTACAGCGTTTCTACGCTCACGTAAAGCAAAGCGG
TGGGCCTCTGGTAGGCATGGACGTTGGCACGCGCCACATCGGCTTGGCCT
TATCCGATGATGCGCGTATAATCTCGTTTCCTCACAGTGCTTTCCGCCGA
AGAAGCGTTTTATCCGACGTTAAGCGGCTGCGGCTTTTGGCCTCAAAATC
CAAGGCAGAATGCGCCGTTGTGGGAATGCCGCGCGCTCCGGAGGGGGCCG
ACTGTCGGGCGCTACAAGACTTTGTGCGGGTATATTCTCAGCGCGTTCTG
GCTGAAAGTGGGTTCGGTGCGCTTGCCTACTGGGACGAGAGTTTCACGAC
TGTGTTGGCGAAAGATGGTTTCATGACGACGGCGAAAAAAAGCGAACGGA
ATGACAGAACGTTGCGGAAAAAAAGAGTTGACGCGGTAAGTGGAACGAAG
GATACAGCGCCCATTTACACTGTCTTAAACAGCAAGCGCGATCTCTCTTA
ATCTGTTTGTGGAAAACAAAACCAAACAAAAAAACTAAACGCAAGTATCT
GACTGTGATGACGCTTCCTTTGACAGGGCGCTGCCGCATTGATTCTCCAA
GACGTGTTGGATGCGATGAAACGACTGTTGGACGAGGAAGGAAGGAAGAT
GAAAGGCACCTTAGCGAATACGGGTTGCCCCAGGTAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2025359..2026045+

>Gchil5475.t1 ID=Gchil5475.t1|Name=Gchil5475.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00004418_pilon:2025359..2026045+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAAATCTGAACTACAGCGTTTCTACGCTCACGTAAAGCAAAGCGG
TGGGCCTCTGGTAGGCATGGACGTTGGCACGCGCCACATCGGCTTGGCCT
TATCCGATGATGCGCGTATAATCTCGTTTCCTCACAGTGCTTTCCGCCGA
AGAAGCGTTTTATCCGACGTTAAGCGGCTGCGGCTTTTGGCCTCAAAATC
CAAGGCAGAATGCGCCGTTGTGGGAATGCCGCGCGCTCCGGAGGGGGCCG
ACTGTCGGGCGCTACAAGACTTTGTGCGGGTATATTCTCAGCGCGTTCTG
GCTGAAAGTGGGTTCGGTGCGCTTGCCTACTGGGACGAGAGTTTCACGAC
TGTGTTGGCGAAAGATGGTTTCATGACGACGGCGAAAAAAAGCGAACGGA
ATGACAGAACGTTGCGGAAAAAAAGAGTTGACGCGGGCGCTGCCGCATTG
ATTCTCCAAGACGTGTTGGATGCGATGAAACGACTGTTGGACGAGGAAGG
AAGGAAGATGAAAGGCACCTTAGCGAATACGGGTTGCCCCAGGTAA
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