Gchil5475.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5475.t1
Unique NameGchil5475.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Homology
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A2V3J699_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J699_9FLOR)

HSP 1 Score: 127 bits (320), Expect = 3.550e-35
Identity = 62/87 (71.26%), Postives = 74/87 (85.06%), Query Frame = 0
Query:   76 MPRAPEGADCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMKRL 162
            MP+AP G DC+ALQ F+R+YS+RVL ESGF  LAYWDES+T+V+A + FMT AKKSERN+  LRK+RVDA AA+LILQDVLDAMK L
Sbjct:    1 MPQAPHGGDCKALQTFIRLYSERVLHESGFHGLAYWDESYTSVIATETFMTNAKKSERNNHRLRKRRVDASAASLILQDVLDAMKSL 87          
BLAST of Gchil5475.t1 vs. uniprot
Match: UPI000DD2EA7F (Holliday junction resolvase RuvX n=1 Tax=Oceanibium sediminis TaxID=2026339 RepID=UPI000DD2EA7F)

HSP 1 Score: 80.5 bits (197), Expect = 6.980e-16
Identity = 56/165 (33.94%), Postives = 88/165 (53.33%), Query Frame = 0
Query:    1 MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMPRAPEGADCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMKRLLDE 165
            M+  +   F A +  SG PL+ +D+GT+ IGLALSD  R I+ PH+  +RR    D + L  L ++      V+G+PR  +G++    Q   R ++ R LA  G  A  +WDE  +TV A+   +      +R     R + +D+ AA++ILQ +LD +  L  E
Sbjct:    1 MITDDAAEFAAALPASG-PLLALDLGTKTIGLALSDVRRTIASPHATLKRRKFTLDAEALDKLIAERGVVGIVLGLPRNMDGSEGPRAQS-TRAFA-RNLAARGVPAQLFWDERLSTVAAERALLEADASRKR-----RAEIIDSVAASVILQGLLDRLGHLARE 157          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A2E0ZMQ9_9CHLR (Putative pre-16S rRNA nuclease n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZMQ9_9CHLR)

HSP 1 Score: 77.8 bits (190), Expect = 4.610e-15
Identity = 47/144 (32.64%), Postives = 80/144 (55.56%), Query Frame = 0
Query:   18 GPLVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMPRAPEGADCRA---LQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDA 158
            G ++ +D+G++ IG+A+SD  R I+  +   +R+S   D  R + + ++ K    VVG+P   EG D      ++D++  +SQ+         + +WDESFTTV A++      K+ ++      +++VDA AAA ILQ  LDA
Sbjct:    7 GRVMALDLGSKRIGVAVSDPTRTIAQSYGVVKRKSREEDFARYQQILAEQKVTLLVVGLPTTAEGEDSDTAVWIRDYMAEFSQQCDVP-----IQFWDESFTTVKAEESLRQRGKRGKK-----ARQQVDAVAAAFILQSYLDA 140          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A3M2EJP1_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2EJP1_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 4.870e-15
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = 0
Query:   17 GGPLVGMDVGTRHIGLALSDDARIISFPHSAFRR-RSVLSDVKRLRLLASKSKAECAVVGMPR---APEGADCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMKR 161
            G PL+G+D GTR IG+A+SD  R I+ P +  RR R +  D++ +  LA+   A   V+G+PR     EGA C +++ F R      LA      +  WDE  +TV A      T  +++R     R++ VD  AAA IL D L+A++R
Sbjct:   19 GAPLIGLDHGTRMIGVAVSDSRRSIASPLTTLRRSRRLTPDLQAIEALAAARGAAAFVLGLPRNMDGSEGARCDSVRSFARS-----LARVSPRPILLWDERLSTVAAHAVLDATDARADR-----RRRLVDRLAAAHILADALEALRR 157          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A6C1SLR7_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6C1SLR7_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 2.130e-14
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 0
Query:   17 GGPLVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMPRAPEGADCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMKRL 162
            G  L+G+DVG+R IGLALSD  R I+ P    RR    +D +RL+ L    +    VVG+P   +G +    Q  VR +++ +LA +   A A+WDE  +T   +   +T A  S R     R + +D  AAA ILQ  LDA+ RL
Sbjct:   16 GRRLMGLDVGSRTIGLALSDVGRTIATPWDTIRRSRFRADAERLKDLFEAQEVGGLVVGLPVQMDGREGPRCQS-VRQFTRDLLAVTALPA-AFWDERLSTRGVERMLITEADMSRRR----RAQVIDKLAAAYILQGALDALSRL 155          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A2D6N8I1_9CHLR (Putative pre-16S rRNA nuclease n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2D6N8I1_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 2.380e-14
Identity = 55/145 (37.93%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   21 VGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMPRAPEGA---DCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERND----RTLRKKRVDAGAAALILQDVLDA 158
            + +DVG R IG+A +D   I+  P +   RRS    V  +  LA+   AE  VVGMP  P+G      R +QDF R    R+    G   + YWDE ++T+ A D    T  +  R      R   ++R+DA AAA+ILQD LDA
Sbjct:    4 LALDVGDRRIGVAGADPEGIVVTPITTLTRRSDRQVVAAITDLAADRGAEIIVVGMPYTPQGELGEQARRVQDFAR----RLEKLPGLDVV-YWDERYSTLEASDRLRETGVRHRRRRGRPARIAERERLDAAAAAVILQDFLDA 143          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A365U4R7_9RHOB (Putative pre-16S rRNA nuclease n=1 Tax=Rhodosalinus sp. E84 TaxID=2259333 RepID=A0A365U4R7_9RHOB)

HSP 1 Score: 76.3 bits (186), Expect = 2.860e-14
Identity = 55/171 (32.16%), Postives = 90/171 (52.63%), Query Frame = 0
Query:    1 MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRL-RLLASKSKAECAVVGMPRAPEGAD---CRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMKRLLDEEG 167
            M+  E++ F A + + G  L G+D+GT+ IG+A+SD AR+++ P +  RR    +D   L RLLA +  A   V+G+PR  +G++    ++ + F R   +R         +A+WDE  +TV A+   +      +R         +D  AA+ ILQ  LD M+R+  E G
Sbjct:    1 MIFDEIEAFAAALPRIGA-LAGLDLGTKTIGVAVSDTARMVASPLATIRRTKFTADAAELDRLLAGREIAGL-VLGLPRNMDGSEGPRAQSTRAFARNLDRRAPCP-----IAFWDERLSTVAAERALLEADTTRKRRGEV-----IDHVAASYILQGALDRMRRIAAETG 159          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A1C3RJV4_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Candidatus Terasakiella magnetica TaxID=1867952 RepID=A0A1C3RJV4_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 3.580e-14
Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 0
Query:    1 MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMPRAPEGAD---CRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMK 160
            MV  EL+ F  ++KQ    L+G+D+GT+ IGLALSD  R+++ P     +     DV +L+ L  K +    V+G+PR  +G +   C+A + F    S+ +        +  WDE  +TV  +   +  A  + +     R + VD  AAA ILQ  LDA++
Sbjct:    1 MVIRELEEFAKNLKQYDR-LMGIDLGTKTIGLALSDVMRMVASPLETLAKGKFSKDVAKLKALIEKEEVSAIVLGLPREMDGTEGKRCQATKAFASNLSREIDLP-----ILLWDERLSTVAVERVLINEADMTRKR----RAEVVDRAAAAYILQGALDALE 153          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A2S6QVF1_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteobacteria bacterium MarineAlpha9_Bin7 TaxID=2013102 RepID=A0A2S6QVF1_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 3.830e-14
Identity = 56/164 (34.15%), Postives = 79/164 (48.17%), Query Frame = 0
Query:    1 MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMP---RAPEGADCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMKR 161
            M+  +L RF   + + G  L+G+D+G + IGLALSD +R I+ P    RR     D   LR + S+      V+G+P      EG  C+A +DF R     ++A      +  WDE  +T       +T A  +    R  R K VD  AA  ILQ  LDA+ R
Sbjct:    4 MISEDLNRFSTSLPKKGR-LLGLDLGAKTIGLALSDISRRIATPMDTLRRTKFDRDASHLRKIYSEHSVTGIVLGLPINMNGSEGPRCQATRDFARNIGTHLVAP-----ILLWDERLSTAA-----VTQALIAADLSRNKRAKLVDKMAAGYILQGALDALDR 156          
BLAST of Gchil5475.t1 vs. uniprot
Match: A0A847FLX5_9CHLR (Putative pre-16S rRNA nuclease n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A847FLX5_9CHLR)

HSP 1 Score: 75.5 bits (184), Expect = 4.490e-14
Identity = 47/144 (32.64%), Postives = 79/144 (54.86%), Query Frame = 0
Query:   20 LVGMDVGTRHIGLALSDDARIISFPHSAFRRRSVLSDVKRLRLLASKSKAECAVVGMPRAPEG---ADCRALQDFVRVYSQRVLAESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAALILQDVLDAMK 160
            L+G+DVG R IG+A+SD   +I+ P     R S + D +R+  L  + +A   VVG P   +G   A  + ++ +V   ++ + AE     + +WDE F+T  A++    + ++S +     R+  +DA AAA+ILQD LD  +
Sbjct:    3 LLGLDVGDRRIGVAVSDATGLIATPLEIVHRTSRVQDFRRIASLLREQQAGGLVVGHPLNDDGSASAQAQRIERYVATLAEALRAEGLDVPIIFWDERFSTQRAEEAVALSGRRSRQ-----RRGHIDAVAAAVILQDYLDEQR 141          
The following BLAST results are available for this feature:
BLAST of Gchil5475.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J699_9FLOR3.550e-3571.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
UPI000DD2EA7F6.980e-1633.94Holliday junction resolvase RuvX n=1 Tax=Oceanibiu... [more]
A0A2E0ZMQ9_9CHLR4.610e-1532.64Putative pre-16S rRNA nuclease n=1 Tax=Anaerolinea... [more]
A0A3M2EJP1_9PROT4.870e-1536.91Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteo... [more]
A0A6C1SLR7_9PROT2.130e-1438.36Putative pre-16S rRNA nuclease n=1 Tax=Rhodospiril... [more]
A0A2D6N8I1_9CHLR2.380e-1437.93Putative pre-16S rRNA nuclease n=1 Tax=Dehalococco... [more]
A0A365U4R7_9RHOB2.860e-1432.16Putative pre-16S rRNA nuclease n=1 Tax=Rhodosalinu... [more]
A0A1C3RJV4_9PROT3.580e-1432.52Putative pre-16S rRNA nuclease n=1 Tax=Candidatus ... [more]
A0A2S6QVF1_9PROT3.830e-1434.15Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteo... [more]
A0A847FLX5_9CHLR4.490e-1432.64Putative pre-16S rRNA nuclease n=1 Tax=Anaerolinea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 18..120
e-value: 3.1E-5
score: 33.4
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 20..157
e-value: 9.4E-23
score: 81.1
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMTIGR00250TIGR00250coord: 22..157
e-value: 5.5E-15
score: 53.6
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 10..164
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 18..160
score: 16.582548
IPR005227Putative pre-16S rRNA nucleaseCDDcd16964YqgFcoord: 20..158
e-value: 6.96234E-29
score: 102.181
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 19..166
e-value: 7.2E-26
score: 92.7
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 10..164
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 20..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2025359..2026045 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5475.t1Gchil5475.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2025359..2026045 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5475.t1 ID=Gchil5475.t1|Name=Gchil5475.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MVKSELQRFYAHVKQSGGPLVGMDVGTRHIGLALSDDARIISFPHSAFRR
RSVLSDVKRLRLLASKSKAECAVVGMPRAPEGADCRALQDFVRVYSQRVL
AESGFGALAYWDESFTTVLAKDGFMTTAKKSERNDRTLRKKRVDAGAAAL
ILQDVLDAMKRLLDEEGRKMKGTLANTGCPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR005227YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR012337RNaseH-like_sf