Gchil5372.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil5372.t1
Unique Name	Gchil5372.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	227

Homology

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BLAST of Gchil5372.t1 vs. uniprot
Match: A0A2V3J7N7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7N7_9FLOR)

HSP 1 Score: 154 bits (390), Expect = 4.720e-44
Identity = 105/223 (47.09%), Postives = 121/223 (54.26%), Query Frame = 0

Query:    1 MQPALPSSSARALAQRPSPPLKSRVYVQLFSWFLLLIAVLHLFEGHSVGVYQLCVSLTGIYSSWDDVTSRAPLVCAFAAGCAVSVVLDVLYLTLLLCASSAALRDALTATVASNTFPNVAPALRQLLAALAADVHFFSLFSAVTSVLFDAMAAYWGLSLYRQAVYAAASSPQRAPLLRASPPPSYSPPRVAGFSSLSRAPHSPAPPPALHPFPGRGHRLGAAD 223
            MQP  P S  +   Q   P LKSR+YVQLFSWF LLI+VLHLFEG S+G+  +                  PL                              R AL + + SNTFPN+APA        + DVHFFS+FSAVTSVLFD MAAYW  SL+  A+ A A+S   APLLR  P  SY+ PRVAGF +LSR  H   PP  L PFPGRGHRLGA D
Sbjct:    1 MQPH-PPSPQQPRVQPEQPQLKSRLYVQLFSWFGLLISVLHLFEGRSIGICLI-----------------PPL------------------------------RKALVSLLVSNTFPNLAPAXXXXXXXXSTDVHFFSIFSAVTSVLFDIMAAYWAFSLHADALAAVATSELHAPLLR--PHASYTRPRVAGFGTLSRPGHPTPPPRTLQPFPGRGHRLGAGD 173

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BLAST of Gchil5372.t1 vs. uniprot
Match: R7QP10_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP10_CHOCR)

HSP 1 Score: 118 bits (295), Expect = 4.620e-30
Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 0

Query:   18 SPPLKSRVYVQLFSWFLLLIAVLHLFEGHSVGVYQLCVSLTGIYSSWDDVTSRAPLVCAFAAGCAVSVVLDVLYLTLLLCASSAALRDALTATVASNTFPNVAPALRQLLAALAADVHFFSLFSAVTSVL 147
            SP LKSR YVQLF+WF LLIAVLHLFEG S+G  QL +S+ GI++SW++VTSR   +  + AGC +  V+D  Y+ LL+ +  + L D +   + SNTF N++ +L +L  AL  D  FF LFS  TS+L
Sbjct:   15 SPQLKSRTYVQLFAWFGLLIAVLHLFEGRSLGWLQLFLSILGIFASWENVTSRRSYLAVYVAGCFIWTVIDAFYMLLLIASIWSPLHDFIQGLIVSNTFRNLSGSLDELFTALGKDTGFFELFSVTTSLL 144

The following BLAST results are available for this feature:

BLAST of Gchil5372.t1 vs. uniprot

BLAST of Gchil5372.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J7N7_9FLOR	4.720e-44	47.09	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QP10_CHOCR	4.620e-30	50.00	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..226
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 158..226
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 134..157
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..24
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..97
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 44..70
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 98..133
None	No IPR available	TMHMM	TMhelix		coord: 72..94
None	No IPR available	TMHMM	TMhelix		coord: 136..158
None	No IPR available	TMHMM	TMhelix		coord: 29..51

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1312942..1313819 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5372.t1	Gchil5372.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004418_pilon 1312942..1313819 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil5372.t1 ID=Gchil5372.t1|Name=Gchil5372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=227bp
MQPALPSSSARALAQRPSPPLKSRVYVQLFSWFLLLIAVLHLFEGHSVGV
YQLCVSLTGIYSSWDDVTSRAPLVCAFAAGCAVSVVLDVLYLTLLLCASS
AALRDALTATVASNTFPNVAPALRQLLAALAADVHFFSLFSAVTSVLFDA
MAAYWGLSLYRQAVYAAASSPQRAPLLRASPPPSYSPPRVAGFSSLSRAP
HSPAPPPALHPFPGRGHRLGAADSST*