Gchil5372.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5372.t1
Unique NameGchil5372.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1312942..1313819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5372Gchil5372Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1312942..1313819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5372.t1Gchil5372.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1312942..1313819 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5372.t1.start1Gchil5372.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1312942..1312944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5372.t1.CDS1Gchil5372.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1312942..1313045 +
Gchil5372.t1.CDS2Gchil5372.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1313243..1313819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5372.t1.exon1Gchil5372.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1312942..1313045 +
Gchil5372.t1.exon2Gchil5372.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1313243..1313819 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5372.t1.intron1Gchil5372.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1313046..1313242 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5372.t1.stop1Gchil5372.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1313817..1313819 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5372.t1 ID=Gchil5372.t1|Name=Gchil5372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=227bp
MQPALPSSSARALAQRPSPPLKSRVYVQLFSWFLLLIAVLHLFEGHSVGV
YQLCVSLTGIYSSWDDVTSRAPLVCAFAAGCAVSVVLDVLYLTLLLCASS
AALRDALTATVASNTFPNVAPALRQLLAALAADVHFFSLFSAVTSVLFDA
MAAYWGLSLYRQAVYAAASSPQRAPLLRASPPPSYSPPRVAGFSSLSRAP
HSPAPPPALHPFPGRGHRLGAADSST*
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spliced messenger RNA

>Gchil5372.t1 ID=Gchil5372.t1|Name=Gchil5372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00004418_pilon:1312942..1313819+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGCGTTGCCATCGTCGTCAGCGCGCGCGCTCGCGCAGCGCCC
GTCACCGCCGCTCAAGTCGCGCGTATACGTGCAGCTTTTCTCGTGGTTTC
TATTGTTGATAGCCGTGCTGCATCTGTTCGAAGGGCACAGCGTGGGCGTC
TATCAGCTGTGCGTATCTCTCACAGGAATCTATTCGAGCTGGGACGACGT
GACGTCGCGCGCGCCGCTCGTGTGCGCCTTCGCGGCGGGCTGCGCAGTCA
GCGTCGTGCTAGACGTGTTATATCTCACGTTGCTGCTGTGCGCGTCGTCA
GCAGCGCTGCGCGACGCGCTCACGGCCACAGTGGCGTCCAACACCTTCCC
CAACGTGGCGCCGGCGCTGCGTCAATTGCTGGCCGCACTGGCCGCCGACG
TGCACTTCTTCTCGCTGTTCTCGGCCGTCACCAGCGTTCTGTTCGACGCC
ATGGCCGCGTACTGGGGCTTGTCGCTGTACCGCCAAGCCGTGTAcgccgc
tgcgtcctcgccgcagcgcgccccgctgctgcgcgcgtcaccgccgccgt
cttactcgccgccgcgcgtggccggcttctcgtcgctgtctcgcgcgccg
cacagccccgcgccgccaccagcgctgcaccccttccccggccgcggcca
ccgactcggcgccgccgACTCGTCAACGTAG
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protein sequence of Gchil5372.t1

>Gchil5372.t1 ID=Gchil5372.t1|Name=Gchil5372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=227bp
MQPALPSSSARALAQRPSPPLKSRVYVQLFSWFLLLIAVLHLFEGHSVGV
YQLCVSLTGIYSSWDDVTSRAPLVCAFAAGCAVSVVLDVLYLTLLLCASS
AALRDALTATVASNTFPNVAPALRQLLAALAADVHFFSLFSAVTSVLFDA
MAAYWGLSLYRQAVYAAASSPQRAPLLRASPPPSYSPPRVAGFSSLSRAP
HSPAPPPALHPFPGRGHRLGAADSST*
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mRNA from alignment at tig00004418_pilon:1312942..1313819+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5372.t1 ID=Gchil5372.t1|Name=Gchil5372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=878bp|location=Sequence derived from alignment at tig00004418_pilon:1312942..1313819+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCCGCGTTGCCATCGTCGTCAGCGCGCGCGCTCGCGCAGCGCCC
GTCACCGCCGCTCAAGTCGCGCGTATACGTGCAGCTTTTCTCGTGGTTTC
TATTGTAAGCTCATGAGTACATATCCCAAAAAGTCGCCCGCGTTGCTTCA
AACACTTTTCGTCACATCCTATCTTGCCTCCCCCCTCCCCCCTCCCCCAT
CTCCCTTGTCTCTCCTGCCGTCGCCGTCTCGCGTGTCGCTGACCGCCCgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgACCCCCGCGCGCGCCAA
GGTTGATAGCCGTGCTGCATCTGTTCGAAGGGCACAGCGTGGGCGTCTAT
CAGCTGTGCGTATCTCTCACAGGAATCTATTCGAGCTGGGACGACGTGAC
GTCGCGCGCGCCGCTCGTGTGCGCCTTCGCGGCGGGCTGCGCAGTCAGCG
TCGTGCTAGACGTGTTATATCTCACGTTGCTGCTGTGCGCGTCGTCAGCA
GCGCTGCGCGACGCGCTCACGGCCACAGTGGCGTCCAACACCTTCCCCAA
CGTGGCGCCGGCGCTGCGTCAATTGCTGGCCGCACTGGCCGCCGACGTGC
ACTTCTTCTCGCTGTTCTCGGCCGTCACCAGCGTTCTGTTCGACGCCATG
GCCGCGTACTGGGGCTTGTCGCTGTACCGCCAAGCCGTGTAcgccgctgc
gtcctcgccgcagcgcgccccgctgctgcgcgcgtcaccgccgccgtctt
actcgccgccgcgcgtggccggcttctcgtcgctgtctcgcgcgccgcac
agccccgcgccgccaccagcgctgcaccccttccccggccgcggccaccg
actcggcgccgccgACTCGTCAACGTAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:1312942..1313819+

>Gchil5372.t1 ID=Gchil5372.t1|Name=Gchil5372.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00004418_pilon:1312942..1313819+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCCGCGTTGCCATCGTCGTCAGCGCGCGCGCTCGCGCAGCGCCC
GTCACCGCCGCTCAAGTCGCGCGTATACGTGCAGCTTTTCTCGTGGTTTC
TATTGTTGATAGCCGTGCTGCATCTGTTCGAAGGGCACAGCGTGGGCGTC
TATCAGCTGTGCGTATCTCTCACAGGAATCTATTCGAGCTGGGACGACGT
GACGTCGCGCGCGCCGCTCGTGTGCGCCTTCGCGGCGGGCTGCGCAGTCA
GCGTCGTGCTAGACGTGTTATATCTCACGTTGCTGCTGTGCGCGTCGTCA
GCAGCGCTGCGCGACGCGCTCACGGCCACAGTGGCGTCCAACACCTTCCC
CAACGTGGCGCCGGCGCTGCGTCAATTGCTGGCCGCACTGGCCGCCGACG
TGCACTTCTTCTCGCTGTTCTCGGCCGTCACCAGCGTTCTGTTCGACGCC
ATGGCCGCGTACTGGGGCTTGTCGCTGTACCGCCAAGCCGTGTAcgccgc
tgcgtcctcgccgcagcgcgccccgctgctgcgcgcgtcaccgccgccgt
cttactcgccgccgcgcgtggccggcttctcgtcgctgtctcgcgcgccg
cacagccccgcgccgccaccagcgctgcaccccttccccggccgcggcca
ccgactcggcgccgccgACTCGTCAACGTAG
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