Gchil5583.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5583.t1
Unique NameGchil5583.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length297
Homology
BLAST of Gchil5583.t1 vs. uniprot
Match: A0A2V3J6Q7_9FLOR (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q7_9FLOR)

HSP 1 Score: 518 bits (1333), Expect = 2.120e-184
Identity = 253/296 (85.47%), Postives = 274/296 (92.57%), Query Frame = 0
Query:    1 MPDSMLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRATHTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQAEDW 296
            MPD +LRALQT ILRICQ  P+GLTDGEIVQ+LD DVKPKHRL+SYNELLR GRLKLLKK++GEG  KKDVVVYQWVSLKDAEKFRGLDA ERMVYDMI+RSGQNGVTKRDMKFRTNIQN SELKQIVERLIAR L+KEIKSVQG NKKVYIASEVEPSAAHTGGPWYND++EFDTEFIETIYA +L YM TME+VT++SVTDYVADLKIS+E L KSDIRQLMMTMLYDSVIE+CEGR +GG+Y+RRAT TP VNHL+S+PCGSCPVFHDCSPDGVISPKTCVYMKEWLEQ  DW
Sbjct:    1 MPDPLLRALQTTILRICQTCPEGLTDGEIVQRLDTDVKPKHRLDSYNELLRTGRLKLLKKTVGEGPTKKDVVVYQWVSLKDAEKFRGLDATERMVYDMIERSGQNGVTKRDMKFRTNIQNTSELKQIVERLIARGLVKEIKSVQGANKKVYIASEVEPSAAHTGGPWYNDDKEFDTEFIETIYAHILSYMGTMEFVTIESVTDYVADLKISNEDLTKSDIRQLMMTMLYDSVIEECEGRKDGGDYYRRATSTPGVNHLSSVPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQTTDW 296          
BLAST of Gchil5583.t1 vs. uniprot
Match: R7QCX5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX5_CHOCR)

HSP 1 Score: 359 bits (921), Expect = 4.800e-122
Identity = 171/273 (62.64%), Postives = 213/273 (78.02%), Query Frame = 0
Query:   24 LTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRATHTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQAEDW 296
            +TD E+  +L  D K K R+ +YN+LL  GR++L  +  G G  +K  V+YQWVS +DAEKF+GLDA++RMV D++ + GQNG TK++MKFRTNIQ+ +ELKQI+ERLI+R LIKEIKSVQGTNK++YI + +EPS  HTGGPWYND+QEFDT FIE IY QVL ++    YVTVD VT YVA++K+S+E L  SDI+ LM TMLYD+VIE CEG+ +G EYFR    TPAVNHL SIPCGSCPVFHDC P GVISP+TCVYM +WL+   DW
Sbjct:    1 MTDKEVTAKLHFDTKAKIRIAAYNKLLAKGRIRLAARVTGTGENRKQQVLYQWVSAEDAEKFKGLDASDRMVLDLVVKGGQNGATKKEMKFRTNIQSNTELKQILERLISRNLIKEIKSVQGTNKRIYIKAGLEPSTLHTGGPWYNDDQEFDTVFIEAIYEQVLAFIKKTNYVTVDQVTSYVAEIKLSNEELSHSDIKSLMNTMLYDTVIELCEGKGDGHEYFRHVQPTPAVNHLASIPCGSCPVFHDCVPGGVISPQTCVYMGDWLKSVTDW 273          
BLAST of Gchil5583.t1 vs. uniprot
Match: A0A6T5WUV9_9RHOD (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A6T5WUV9_9RHOD)

HSP 1 Score: 201 bits (511), Expect = 2.040e-59
Identity = 109/303 (35.97%), Postives = 177/303 (58.42%), Query Frame = 0
Query:    8 ALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCE-------------------GRNEGGEYFRRATHTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            AL  ++L   +  P G +D EI +Q+   V PK R+++YN LL+ GRL +LK+   +G     VV+Y+ VS + A K RGL A ER+V+  I++ G  G+  RD++F++ +Q  ++  ++++ L  RRL+K +KSV+  NKK Y+ +++ PS   TGGPWY+D++E+DTEFI  +Y Q+L +  ++ + +V   T ++ +  IS E L +  ++ L+ TML+D  +E  E                   G ++   Y  R +     + L  +PCG CP+  +C P GVISP TC Y+ EWL+
Sbjct:   21 ALLESLLSAARSRPGGASDQEIREQIGPSVTPKMRMDAYNHLLQKGRL-VLKRRESDG-----VVLYEEVSAEAAAKLRGLGAEERLVFAAIEKCGNVGIWTRDLRFKSGLQQ-NQFSKVLKTLETRRLVKAVKSVKARNKKFYMLADLAPSKELTGGPWYSDQKEYDTEFIFALYTQLLRFFRSLPHASVQDATRFIENSGISKEKLEREHVQALIDTMLFDGALEAFEDKGSHESFMADALGQSSATGLSKSPRYCVRPSRVHVQSVLAEMPCGLCPLQRECHPGGVISPSTCKYLDEWLD 316          
BLAST of Gchil5583.t1 vs. uniprot
Match: A0A2P6V1J4_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1J4_9CHLO)

HSP 1 Score: 184 bits (467), Expect = 3.190e-53
Identity = 103/290 (35.52%), Postives = 162/290 (55.86%), Query Frame = 0
Query:    5 MLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRATHTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQAE 294
            M R ++  +L +C+ HP+G+ D  +  +L  DV    R  + N LL + +L++L       +      +Y+  +  D  +F+GL A + +VY  IQ +G  G+  RDMK RTN+Q P   K I++ L  R L+K +KSVQ  ++KVY+  E+EP+   TGGPW+  +  FD+EF+  +    L Y+ +    ++  +  ++ +  IS +AL++ D+ +++ T+ YD  IEQ E  +    Y       P    LTSIPCG CPVF +C   G ISP TC Y ++WLEQ E
Sbjct:    1 MSRKVEEMVLAVCRKHPEGVADTVLESELP-DVSVNDRALAINSLLSSMKLQILVNPADPSSH-----IYKASTTGDTARFKGLTAEDMLVYQCIQAAGNIGIWTRDMKQRTNLQQPKVTK-ILKALEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWFGPDA-FDSEFVAVLQETTLSYIKSKGQPSLADIVRFIKETGISKQALQEDDVERIINTLEYDGKIEQIEEDDGDRHYRMMLMRIPESTPLTSIPCGVCPVFSECVEGGKISPATCTYYQDWLEQME 282          
BLAST of Gchil5583.t1 vs. uniprot
Match: E1Z933_CHLVA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z933_CHLVA)

HSP 1 Score: 182 bits (462), Expect = 1.590e-52
Identity = 103/288 (35.76%), Postives = 167/288 (57.99%), Query Frame = 0
Query:    5 MLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRATHT-PAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            M R ++  IL +C+ HP+G+ D  +  +L   V    R  + N LL + +L++L       +      +Y+  ++ DA +F+GL A + +VY  IQ +G  G+  RDMK RTN+Q P ++ +I++ L  R L+K IKSVQ  ++KVY+  E+EP+   TGGPWY  +  FD+EFI  +    + Y+ T    T+  +  ++ +  IS +AL++ D+ +++ T+  D  IE  EG  +G  ++R    + P     TSIPCG CPVF++C   G ISP+TC+Y  +WL+
Sbjct:    1 MSRKVEELILTVCRKHPEGVQDTALEAELPS-VAVNDRAVAINSLLASLKLQILVNPADPSSH-----IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQP-KINKILKTLEERCLVKSIKSVQNASRKVYMLYELEPAKELTGGPWYGPDA-FDSEFITVLQEATMSYINTKGDATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLPHYRLPLMSIPEATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWLD 280          
BLAST of Gchil5583.t1 vs. uniprot
Match: A0A1Y1IK16_KLENI (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI)

HSP 1 Score: 179 bits (453), Expect = 4.550e-51
Identity = 107/295 (36.27%), Postives = 166/295 (56.27%), Query Frame = 0
Query:    2 PDSMLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCE----GRNEGGEYFRRATHT-PAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            PDS +  L+ AI  +CQ    G+T   +  +L  D+  +   ++ N LL   +L++  ++          + Y+ V+ +D  +FRGL + E +VY +IQ S   G+  RD+K R+N+Q P ++ +I++ L  RRLIK +KSV   N+KVY+  E+EPS   TGG WY  EQEFD EFI  +   V  ++     VT++ +  +V     +   LR  D +Q+  T++YD  +E+        +    ++R +  + P  N  TSIPCG CPV H+CS DG+ISP TCVY +EWL+
Sbjct:    6 PDSAVFRLEEAIANLCQESDGGVTQKMLQDELP-DIPLEELGSALNVLLSRHQLQMYTQA--------STLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQP-QITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYT-EQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEISEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPATCVYYQEWLQ 289          
BLAST of Gchil5583.t1 vs. uniprot
Match: I0Z1U2_COCSC (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1U2_COCSC)

HSP 1 Score: 175 bits (443), Expect = 9.330e-50
Identity = 100/284 (35.21%), Postives = 162/284 (57.04%), Query Frame = 0
Query:    9 LQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRATHT-PAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            ++ +IL +C+ HP+GL +  + Q     +    R  + N LL   RL++L+        + + +VYQ V  ++A K +GL A + +VY  I ++G  G+  +D+K RTN+Q P ++ +I++ L  R L+K +KSV   ++KVYI  E+EP+   TGG WY   Q+FD EFI+ +      Y+      T++ V D+V     S   LR +D+  ++ T+ +D ++E     ++ GE +R A H  P  +  TS+PCG CPV ++CS  GVISP TC Y + WL+
Sbjct:    5 IEESILALCRQHPEGLPEAVLEQY----IPATQRTTAMNNLLAKHRLRILQHP------RDNSLVYQEVIQEEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQP-QITKILKNLDQRSLVKSVKSVINPSRKVYILFELEPARELTGGAWYTG-QDFDAEFIQVLQQACHKYIENEGVATLEEVADFVRTKGFSRVELRDADVLCILRTLEFDGLVES--SLSDDGEVYRPARHVVPKTSPFTSMPCGVCPVINECSDGGVISPSTCTYYQTWLD 274          
BLAST of Gchil5583.t1 vs. uniprot
Match: A0A061SD36_9CHLO (DNA-directed RNA polymerase III subunit C34 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SD36_9CHLO)

HSP 1 Score: 176 bits (447), Expect = 2.480e-49
Identity = 101/284 (35.56%), Postives = 167/284 (58.80%), Query Frame = 0
Query:   10 QTAILRICQGHPDGLTDGEIVQQLDK-DVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRAT-HTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            +  I+ +C+ H +GL++  + ++L   D+  K    + N LL+  RL++ K   G        +VY+ + ++DA KF+GL   E +VY +I+++G  G+  +DMKF++N+Q P ++ +I++ L  R L+K ++SV G NKKVY+  E+EPS   TGG WY  EQ+FD+EFIE +      ++     VT+  V +++         LR+ D+  ++ +++YD  I+  +  ++  E+FR A    P  +  TSIPCG CPVF  C PDG ISP  C+Y  +WL+
Sbjct:   92 EQGIIDLCRKHSEGLSEAVLDKELSGFDISAKAA--AINSLLQQQRLQIFKSPDGS-------LVYKEIKVEDAAKFKGLGPQEMLVYQLIKQTGNKGMWTKDMKFQSNLQQP-QITKILKTLEGRNLVKSVRSVTGGNKKVYMLYELEPSRELTGGAWYT-EQKFDSEFIEALREACSQFIHKQGDVTLGDVVEFIHSRGFVKVDLREEDVLSVINSLVYDGRIDSVDDEDDV-EHFRPAMLKIPRQSAFTSIPCGVCPVFAQCRPDGPISPAKCIYFDKWLD 363          
BLAST of Gchil5583.t1 vs. uniprot
Match: A0A5J4XES7_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XES7_9CHLO)

HSP 1 Score: 167 bits (424), Expect = 7.150e-47
Identity = 100/287 (34.84%), Postives = 163/287 (56.79%), Query Frame = 0
Query:    6 LRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRATHT-PAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            + A  TAIL + +  P+G+    +  +L        R ++ N LL++ +++L        A   +  VY+ V    + + +GL     +VY  I+ +G  GV  +DMKF+TN+Q P ++ +I++ L  R L+K IK V   +KK Y+  ++EP+   TGG WY D Q++D+EFI+ +  Q   ++      T++ V+ ++ D  IS   LR  D+  ++ T+ YD  IE+ +   +G + FR+A    P  +  TSIPCG CPVF++C+PDG ISP TCVY ++WLE
Sbjct:    1 MEAAMTAILDLFKRMPEGIPQHVVPAELAGTPASVQR-DAVNRLLKDKKIQLQM-----SANDSNTFVYKEVEAGKSARLKGLAPEFLLVYQCIEAAGNTGVWTKDMKFKTNLQQP-QITKILKELETRTLVKAIKPVNQPSKKFYMLYDLEPAREITGGAWYTD-QDYDSEFIQVLQTQCFKFIKQEGDPTLEDVSTFIHDKGISRVQLRDEDVMMILNTLEYDGQIEKIDSP-DGEDRFRQALLAIPESSAFTSIPCGVCPVFNECTPDGPISPATCVYFQQWLE 278          
BLAST of Gchil5583.t1 vs. uniprot
Match: UPI001939F246 (DNA-directed RNA polymerase III subunit RPC6-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939F246)

HSP 1 Score: 166 bits (421), Expect = 4.230e-46
Identity = 96/303 (31.68%), Postives = 167/303 (55.12%), Query Frame = 0
Query:    9 LQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELLRNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTME------------------YVTVDSVTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCE-GRNEGGEYFRRATHTPA-VNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLE 291
            L+  IL +C  +P G+ D E +Q+ +  +  K R+ + N+LL  G+++LLK + G        ++Y+      A + +G+D  +++VY +I+ +G  G+  RD++ R N+   +E+ +I++ L  R+LIK +KSV  + KKVY+   +EP ++ TGG WY+  Q+F++EF++ +  Q   ++   E                  Y + + V +++++L IS   L   DI  ++ T++YDS +E    G  +G     +A H+      +T  PC  CPVF  C P GV+SP+ CVYM EW+E
Sbjct:   15 LEDRILAMCAEYPKGIGD-EFIQKKEPQIDSKERVAAINKLLTMGKIELLKGTSG--------LIYRLKCTTGASQIKGIDNQDKLVYQVIESAGNKGIWIRDIRHRCNLML-TEVNKILKNLENRKLIKAVKSVTASKKKVYMLFNLEPDSSITGGAWYSG-QDFESEFVDVLNQQCYKFLQQKEESAASETAISPNARQAASYASSEEVLNFISNLGISKVKLSVEDIETILNTLIYDSKVEMMVVGTKDGTNKLYKAVHSLVEATDMTRAPCAVCPVFDQCRPGGVVSPEKCVYMSEWME 306          
The following BLAST results are available for this feature:
BLAST of Gchil5583.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q7_9FLOR2.120e-18485.47DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
R7QCX5_CHOCR4.800e-12262.64Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6T5WUV9_9RHOD2.040e-5935.97DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A2P6V1J4_9CHLO3.190e-5335.52DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
E1Z933_CHLVA1.590e-5235.76DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A1Y1IK16_KLENI4.550e-5136.27DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
I0Z1U2_COCSC9.330e-5035.21DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A061SD36_9CHLO2.480e-4935.56DNA-directed RNA polymerase III subunit C34 n=3 Ta... [more]
A0A5J4XES7_9CHLO7.150e-4734.84DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
UPI001939F2464.230e-4631.68DNA-directed RNA polymerase III subunit RPC6-like ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 2..194
e-value: 1.3E-37
score: 127.6
coord: 187..294
e-value: 3.3E-21
score: 73.8
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 193..291
e-value: 5.0E-18
score: 65.6
coord: 6..190
e-value: 3.2E-38
score: 131.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 65..147
e-value: 1.8E-19
score: 71.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 7..63
e-value: 6.3E-9
score: 37.4
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 10..290
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 80..154
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 8..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2570801..2571691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5583.t1Gchil5583.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2570801..2571691 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5583.t1 ID=Gchil5583.t1|Name=Gchil5583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MPDSMLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELL
RNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQ
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKV
YIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDS
VTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRAT
HTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQAEDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007832RNA_pol_Rpc34
IPR036388WH-like_DNA-bd_sf
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf