Gchil5583.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5583.t1
Unique NameGchil5583.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2570801..2571691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002503679.1
PFAMsRNA_pol_Rpc34
Max annot lvl3041|Chlorophyta
KEGG rclassRC02795
KEGG koko:K03025
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Evalue3.72e-57
EggNOG OGsCOG5111@1|root,KOG3233@2759|Eukaryota,37THT@33090|Viridiplantae,34IYH@3041|Chlorophyta
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5583Gchil5583Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2570801..2571691 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5583.t1.stop1Gchil5583.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2570801..2570803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5583.t1.CDS1Gchil5583.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2570801..2571691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5583.t1.exon1Gchil5583.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2570801..2571691 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5583.t1.start1Gchil5583.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2571689..2571691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5583.t1Gchil5583.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2570801..2571691 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5583.t1 ID=Gchil5583.t1|Name=Gchil5583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp
MPDSMLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELL
RNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQ
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKV
YIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDS
VTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRAT
HTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQAEDW*
back to top

spliced messenger RNA

>Gchil5583.t1 ID=Gchil5583.t1|Name=Gchil5583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004418_pilon:2570801..2571691- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGACTCCATGTTACGTGCTTTACAAACAGCGATACTTCGGATCTG
CCAAGGCCACCCTGACGGCTTGACAGATGGTGAAATAGTTCAGCAACTAG
ACAAAGATGTCAAACCAAAACACCGTCTCAACTCGTACAATGAATTGCTC
CGAAACGGAAGGCTGAAGCTCTTGAAAAAATCCATTGGCGAAGGGGCAGA
AAAGAAAGACGTCGTCGTTTACCAATGGGTAAGTCTCAAGGACGCGGAGA
AGTTCCGCGGACTTGATGCTGCTGAGAGAATGGTGTACGATATGATTCAG
CGATCTGGTCAAAATGGTGTTACAAAGCGAGACATGAAGTTCCGGACAAA
CATTCAAAACCCGTCGGAGTTGAAGCAAATTGTGGAAAGGTTGATCGCAC
GGAGACTGATAAAGGAGATAAAGTCTGTTCAAGGAACAAACAAAAAAGTT
TACATTGCATCAGAGGTGGAACCATCAGCAGCTCACACTGGCGGTCCTTG
GTACAATGACGAGCAAGAGTTTGATACAGAGTTCATTGAAACTATTTACG
CTCAGGTTCTTGGATACATGATGACAATGGAGTATGTCACAGTGGATAGC
GTCACAGATTACGTGGCGGACTTGAAAATATCACACGAAGCTCTTAGGAA
AAGTGATATAAGACAGCTTATGATGACCATGTTGTATGATTCAGTTATTG
AACAATGCGAGGGAAGGAATGAAGGAGGAGAATATTTTAGAAGAGCTACA
CATACGCCGGCTGTCAACCATCTAACCTCTATCCCATGCGGATCTTGTCC
AGTGTTTCATGACTGTAGCCCCGATGGTGTAATTTCCCCGAAGACGTGTG
TGTACATGAAAGAATGGCTTGAACAAGCAGAAGACTGGTAA
back to top

protein sequence of Gchil5583.t1

>Gchil5583.t1 ID=Gchil5583.t1|Name=Gchil5583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MPDSMLRALQTAILRICQGHPDGLTDGEIVQQLDKDVKPKHRLNSYNELL
RNGRLKLLKKSIGEGAEKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIQ
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARRLIKEIKSVQGTNKKV
YIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYAQVLGYMMTMEYVTVDS
VTDYVADLKISHEALRKSDIRQLMMTMLYDSVIEQCEGRNEGGEYFRRAT
HTPAVNHLTSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQAEDW*
back to top

mRNA from alignment at tig00004418_pilon:2570801..2571691-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5583.t1 ID=Gchil5583.t1|Name=Gchil5583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004418_pilon:2570801..2571691- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGACTCCATGTTACGTGCTTTACAAACAGCGATACTTCGGATCTG
CCAAGGCCACCCTGACGGCTTGACAGATGGTGAAATAGTTCAGCAACTAG
ACAAAGATGTCAAACCAAAACACCGTCTCAACTCGTACAATGAATTGCTC
CGAAACGGAAGGCTGAAGCTCTTGAAAAAATCCATTGGCGAAGGGGCAGA
AAAGAAAGACGTCGTCGTTTACCAATGGGTAAGTCTCAAGGACGCGGAGA
AGTTCCGCGGACTTGATGCTGCTGAGAGAATGGTGTACGATATGATTCAG
CGATCTGGTCAAAATGGTGTTACAAAGCGAGACATGAAGTTCCGGACAAA
CATTCAAAACCCGTCGGAGTTGAAGCAAATTGTGGAAAGGTTGATCGCAC
GGAGACTGATAAAGGAGATAAAGTCTGTTCAAGGAACAAACAAAAAAGTT
TACATTGCATCAGAGGTGGAACCATCAGCAGCTCACACTGGCGGTCCTTG
GTACAATGACGAGCAAGAGTTTGATACAGAGTTCATTGAAACTATTTACG
CTCAGGTTCTTGGATACATGATGACAATGGAGTATGTCACAGTGGATAGC
GTCACAGATTACGTGGCGGACTTGAAAATATCACACGAAGCTCTTAGGAA
AAGTGATATAAGACAGCTTATGATGACCATGTTGTATGATTCAGTTATTG
AACAATGCGAGGGAAGGAATGAAGGAGGAGAATATTTTAGAAGAGCTACA
CATACGCCGGCTGTCAACCATCTAACCTCTATCCCATGCGGATCTTGTCC
AGTGTTTCATGACTGTAGCCCCGATGGTGTAATTTCCCCGAAGACGTGTG
TGTACATGAAAGAATGGCTTGAACAAGCAGAAGACTGGTAA
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:2570801..2571691-

>Gchil5583.t1 ID=Gchil5583.t1|Name=Gchil5583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00004418_pilon:2570801..2571691- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGACTCCATGTTACGTGCTTTACAAACAGCGATACTTCGGATCTG
CCAAGGCCACCCTGACGGCTTGACAGATGGTGAAATAGTTCAGCAACTAG
ACAAAGATGTCAAACCAAAACACCGTCTCAACTCGTACAATGAATTGCTC
CGAAACGGAAGGCTGAAGCTCTTGAAAAAATCCATTGGCGAAGGGGCAGA
AAAGAAAGACGTCGTCGTTTACCAATGGGTAAGTCTCAAGGACGCGGAGA
AGTTCCGCGGACTTGATGCTGCTGAGAGAATGGTGTACGATATGATTCAG
CGATCTGGTCAAAATGGTGTTACAAAGCGAGACATGAAGTTCCGGACAAA
CATTCAAAACCCGTCGGAGTTGAAGCAAATTGTGGAAAGGTTGATCGCAC
GGAGACTGATAAAGGAGATAAAGTCTGTTCAAGGAACAAACAAAAAAGTT
TACATTGCATCAGAGGTGGAACCATCAGCAGCTCACACTGGCGGTCCTTG
GTACAATGACGAGCAAGAGTTTGATACAGAGTTCATTGAAACTATTTACG
CTCAGGTTCTTGGATACATGATGACAATGGAGTATGTCACAGTGGATAGC
GTCACAGATTACGTGGCGGACTTGAAAATATCACACGAAGCTCTTAGGAA
AAGTGATATAAGACAGCTTATGATGACCATGTTGTATGATTCAGTTATTG
AACAATGCGAGGGAAGGAATGAAGGAGGAGAATATTTTAGAAGAGCTACA
CATACGCCGGCTGTCAACCATCTAACCTCTATCCCATGCGGATCTTGTCC
AGTGTTTCATGACTGTAGCCCCGATGGTGTAATTTCCCCGAAGACGTGTG
TGTACATGAAAGAATGGCTTGAACAAGCAGAAGACTGGTAA
back to top