Gchil5494.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5494.t1
Unique NameGchil5494.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2129771..2130793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5494Gchil5494Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2129771..2130793 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5494.t1.stop1Gchil5494.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2129771..2129773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5494.t1.CDS1Gchil5494.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2129771..2130793 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5494.t1.exon1Gchil5494.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2129771..2130793 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5494.t1.start1Gchil5494.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2130791..2130793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5494.t1Gchil5494.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2129771..2130793 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5494.t1 ID=Gchil5494.t1|Name=Gchil5494.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=341bp
MKFRSKDDKFSGTSDEDWKYYLAQYQKLCVENRVKAGDRVMYLHHMLQGQ
APQFYYRNIDGRENNWGAVVAMFREVFASPAKMERTSQKLQGLHISQFET
KSRTEAQALYDLARDVERLVPMAHHENRSDRSMRVFLQNAVKGREWARNV
AATSHMEELSYLKYLSLLEQAQTEWEEHDPSPSTGRSDFRKSRWNVNYND
HGRYGRHPHTARQRKSESPPSCSSNCMCFNCGKEDCRVSRCKEQLNFERI
ALNKAAYYESKNKSVNVSEVLVEFVRDLQEALDENHEEISNDEAERPEAE
SFDTNFLSNFNAMTTKSQLAATSNAVLNDVNAVDIKDEPF*
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spliced messenger RNA

>Gchil5494.t1 ID=Gchil5494.t1|Name=Gchil5494.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004418_pilon:2129771..2130793- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCCGAAGCAAGGACGATAAGTTTTCTGGCACATCGGATGAGGA
TTGGAAATACTATCTGGCACAATACCAGAAATTATGCGTAGAGAATCGAG
TGAAAGCGGGGGACCGTGTTATGTACCTCCATCATATGCTTCAAGGACAG
GCCCCACAATTCTATTACCGTAATATTGACGGTAGAGAGAATAACTGGGG
AGCAGTTGTGGCGATGTTCCGAGAAGTTTTTGCCTCTCCTGCCAAGATGG
AACGCACGTCTCAGAAGCTTCAAGGGTTGCACATTTCGCAATTCGAAACG
AAGAGCCGCACAGAAGCCCAAGCTCTGTATGACCTGGCACGTGATGTAGA
ACGTCTCGTCCCTATGGCCCACCATGAGAACCGATCTGACCGTAGCATGC
GTGTATTCCTACAAAACGCAGTCAAAGGTCGCGAATGGGCTCGAAATGTT
GCTGCCACGTCTCACATGGAAGAATTGAGCTATTTAAAATATTTGTCCTT
GCTGGAACAAGCTCAAACGGAATGGGAGGAGCACGACCCTTCGCCTTCTA
CAGGACGTTCTGATTTCCGCAAATCCAGGTGGAACGTGAACTACAATGAT
CATGGACGTTACGGTCGTCATCCTCATACCGCTCGCCAGAGAAAGTCCGA
GTCTCCTCCCTCGTGTTCTTCAAACTGCATGTGCTTCAACTGCGGAAAGG
AGGACTGTCGTGTCTCTCGGTGCAAAGAACAACTCAATTTCGAACGTATC
GCACTGAATAAAGCAGCATACTACGAGTCGAAGAACAAGTCCGTCAACGT
CAGTGAAGTACTTGTCGAATTTGTTCGCGATTTACAGGAGGCACTTGATG
AAAACCATGAGGAAATTTCTAATGACGAGGCAGAACGACCAGAAGCAGAA
TCATTTGATACGAACTTCTTGTCCAATTTCAACGCAATGACAACCAAGTC
CCAACTTGCCGCCACTTCGAACGCAGTTCTCAACGATGTGAACGCCGTGG
ACATCAAAGATGAGCCTTTTTAA
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protein sequence of Gchil5494.t1

>Gchil5494.t1 ID=Gchil5494.t1|Name=Gchil5494.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=341bp
MKFRSKDDKFSGTSDEDWKYYLAQYQKLCVENRVKAGDRVMYLHHMLQGQ
APQFYYRNIDGRENNWGAVVAMFREVFASPAKMERTSQKLQGLHISQFET
KSRTEAQALYDLARDVERLVPMAHHENRSDRSMRVFLQNAVKGREWARNV
AATSHMEELSYLKYLSLLEQAQTEWEEHDPSPSTGRSDFRKSRWNVNYND
HGRYGRHPHTARQRKSESPPSCSSNCMCFNCGKEDCRVSRCKEQLNFERI
ALNKAAYYESKNKSVNVSEVLVEFVRDLQEALDENHEEISNDEAERPEAE
SFDTNFLSNFNAMTTKSQLAATSNAVLNDVNAVDIKDEPF*
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mRNA from alignment at tig00004418_pilon:2129771..2130793-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5494.t1 ID=Gchil5494.t1|Name=Gchil5494.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004418_pilon:2129771..2130793- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTCCGAAGCAAGGACGATAAGTTTTCTGGCACATCGGATGAGGA
TTGGAAATACTATCTGGCACAATACCAGAAATTATGCGTAGAGAATCGAG
TGAAAGCGGGGGACCGTGTTATGTACCTCCATCATATGCTTCAAGGACAG
GCCCCACAATTCTATTACCGTAATATTGACGGTAGAGAGAATAACTGGGG
AGCAGTTGTGGCGATGTTCCGAGAAGTTTTTGCCTCTCCTGCCAAGATGG
AACGCACGTCTCAGAAGCTTCAAGGGTTGCACATTTCGCAATTCGAAACG
AAGAGCCGCACAGAAGCCCAAGCTCTGTATGACCTGGCACGTGATGTAGA
ACGTCTCGTCCCTATGGCCCACCATGAGAACCGATCTGACCGTAGCATGC
GTGTATTCCTACAAAACGCAGTCAAAGGTCGCGAATGGGCTCGAAATGTT
GCTGCCACGTCTCACATGGAAGAATTGAGCTATTTAAAATATTTGTCCTT
GCTGGAACAAGCTCAAACGGAATGGGAGGAGCACGACCCTTCGCCTTCTA
CAGGACGTTCTGATTTCCGCAAATCCAGGTGGAACGTGAACTACAATGAT
CATGGACGTTACGGTCGTCATCCTCATACCGCTCGCCAGAGAAAGTCCGA
GTCTCCTCCCTCGTGTTCTTCAAACTGCATGTGCTTCAACTGCGGAAAGG
AGGACTGTCGTGTCTCTCGGTGCAAAGAACAACTCAATTTCGAACGTATC
GCACTGAATAAAGCAGCATACTACGAGTCGAAGAACAAGTCCGTCAACGT
CAGTGAAGTACTTGTCGAATTTGTTCGCGATTTACAGGAGGCACTTGATG
AAAACCATGAGGAAATTTCTAATGACGAGGCAGAACGACCAGAAGCAGAA
TCATTTGATACGAACTTCTTGTCCAATTTCAACGCAATGACAACCAAGTC
CCAACTTGCCGCCACTTCGAACGCAGTTCTCAACGATGTGAACGCCGTGG
ACATCAAAGATGAGCCTTTTTAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2129771..2130793-

>Gchil5494.t1 ID=Gchil5494.t1|Name=Gchil5494.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00004418_pilon:2129771..2130793- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTCCGAAGCAAGGACGATAAGTTTTCTGGCACATCGGATGAGGA
TTGGAAATACTATCTGGCACAATACCAGAAATTATGCGTAGAGAATCGAG
TGAAAGCGGGGGACCGTGTTATGTACCTCCATCATATGCTTCAAGGACAG
GCCCCACAATTCTATTACCGTAATATTGACGGTAGAGAGAATAACTGGGG
AGCAGTTGTGGCGATGTTCCGAGAAGTTTTTGCCTCTCCTGCCAAGATGG
AACGCACGTCTCAGAAGCTTCAAGGGTTGCACATTTCGCAATTCGAAACG
AAGAGCCGCACAGAAGCCCAAGCTCTGTATGACCTGGCACGTGATGTAGA
ACGTCTCGTCCCTATGGCCCACCATGAGAACCGATCTGACCGTAGCATGC
GTGTATTCCTACAAAACGCAGTCAAAGGTCGCGAATGGGCTCGAAATGTT
GCTGCCACGTCTCACATGGAAGAATTGAGCTATTTAAAATATTTGTCCTT
GCTGGAACAAGCTCAAACGGAATGGGAGGAGCACGACCCTTCGCCTTCTA
CAGGACGTTCTGATTTCCGCAAATCCAGGTGGAACGTGAACTACAATGAT
CATGGACGTTACGGTCGTCATCCTCATACCGCTCGCCAGAGAAAGTCCGA
GTCTCCTCCCTCGTGTTCTTCAAACTGCATGTGCTTCAACTGCGGAAAGG
AGGACTGTCGTGTCTCTCGGTGCAAAGAACAACTCAATTTCGAACGTATC
GCACTGAATAAAGCAGCATACTACGAGTCGAAGAACAAGTCCGTCAACGT
CAGTGAAGTACTTGTCGAATTTGTTCGCGATTTACAGGAGGCACTTGATG
AAAACCATGAGGAAATTTCTAATGACGAGGCAGAACGACCAGAAGCAGAA
TCATTTGATACGAACTTCTTGTCCAATTTCAACGCAATGACAACCAAGTC
CCAACTTGCCGCCACTTCGAACGCAGTTCTCAACGATGTGAACGCCGTGG
ACATCAAAGATGAGCCTTTTTAA
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