Gchil5482.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5482.t1
Unique NameGchil5482.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2041593..2042756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5482Gchil5482Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2041593..2042756 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5482.t1.stop1Gchil5482.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2041593..2041595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5482.t1.CDS1Gchil5482.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2041593..2042756 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5482.t1.exon1Gchil5482.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2041593..2042756 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5482.t1.start1Gchil5482.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2042754..2042756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5482.t1Gchil5482.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2041593..2042756 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5482.t1 ID=Gchil5482.t1|Name=Gchil5482.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=388bp
MTSPQPATRNDEETLRQLLRDRIAQLESREEEPPKSADEQAAYEAFHVAS
TAARALVADREISPEEKLRVLQLMYKDCISNVRDLEYDLGMEEKRLSVAE
LDYSELGEELRKIEASAEKLKAQSKDLSKENKIRLEESAKKSAAEREKRE
EICKKFDDAMKEINAQLNHDDGGENEADDPTGELESQLDQLQTAYEKRET
FYEKTLEQPAKDEKKHFERLQRAEREFEEDRLNIMKERKRLEELRKRSAN
TKKEVEKFLMKRDEIGKCRQEREDALNRQAADLKRLQQSTAGLRKAMSKL
DKETEELKNKSKETIAQVKACEDELEFWKSKTKSELDKRETLERVCRTLT
EQRTIMRKEVQGMKEDWRELENEIENLRMEINEPEAL*
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spliced messenger RNA

>Gchil5482.t1 ID=Gchil5482.t1|Name=Gchil5482.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004418_pilon:2041593..2042756- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCACCGCAGCCAGCGACAAGGAATGATGAAGAAACACTACGCCA
GCTGTTGCGCGACCGTATCGCTCAGTTGGAAAGCAGAGAAGAAGAACCCC
CGAAGTCAGCAGATGAACAAGCCGCATACGAAGCATTTCATGTTGCGTCT
ACTGCTGCTAGAGCACTTGTGGCTGATCGAGAAATATCACCAGAAGAGAA
ACTACGAGTACTGCAGCTGATGTACAAAGATTGCATCTCAAATGTACGCG
ACTTGGAATACGACTTAGGGATGGAAGAAAAGAGATTAAGCGTTGCAGAA
TTGGACTACAGCGAACTTGGTGAAGAACTACGCAAAATTGAAGCATCGGC
GGAGAAGTTGAAGGCCCAATCGAAGGATCTTTCCAAAGAAAACAAAATTC
GACTCGAAGAATCAGCAAAAAAGAGCGCAGCAGAACGCGAAAAGCGAGAA
GAAATTTGCAAGAAGTTTGATGACGCCATGAAAGAAATTAACGCTCAACT
AAATCATGATGATGGGGGAGAAAACGAAGCAGATGATCCAACCGGAGAAT
TAGAGTCTCAACTAGACCAGCTTCAGACTGCATATGAAAAGAGAGAAACA
TTCTATGAGAAAACCTTAGAACAACCCGCAAAAGATGAAAAGAAGCATTT
CGAACGTTTACAGAGGGCGGAACGCGAGTTTGAAGAAGACCGATTAAATA
TTATGAAAGAGAGGAAACGTCTAGAAGAACTACGGAAACGCAGCGCGAAC
ACTAAGAAAGAAGTTGAAAAGTTTCTTATGAAACGAGATGAGATCGGAAA
GTGCAGACAAGAACGCGAAGACGCTCTCAACAGGCAGGCTGCCGACCTGA
AACGGCTTCAGCAGAGTACAGCCGGTTTACGAAAAGCAATGAGCAAACTG
GACAAAGAGACAGAGGAACTAAAAAACAAGTCGAAAGAAACTATTGCGCA
AGTAAAAGCTTGCGAAGATGAGCTAGAATTTTGGAAATCAAAGACGAAGA
GCGAATTGGACAAGAGGGAAACTCTCGAAAGGGTTTGTCGAACACTAACA
GAACAAAGAACAATAATGAGGAAAGAGGTTCAGGGTATGAAAGAGGATTG
GAGAGAGCTTGAGAATGAAATTGAAAACTTAAGAATGGAAATCAATGAAC
CTGAGGCTCTGTGA
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protein sequence of Gchil5482.t1

>Gchil5482.t1 ID=Gchil5482.t1|Name=Gchil5482.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=388bp
MTSPQPATRNDEETLRQLLRDRIAQLESREEEPPKSADEQAAYEAFHVAS
TAARALVADREISPEEKLRVLQLMYKDCISNVRDLEYDLGMEEKRLSVAE
LDYSELGEELRKIEASAEKLKAQSKDLSKENKIRLEESAKKSAAEREKRE
EICKKFDDAMKEINAQLNHDDGGENEADDPTGELESQLDQLQTAYEKRET
FYEKTLEQPAKDEKKHFERLQRAEREFEEDRLNIMKERKRLEELRKRSAN
TKKEVEKFLMKRDEIGKCRQEREDALNRQAADLKRLQQSTAGLRKAMSKL
DKETEELKNKSKETIAQVKACEDELEFWKSKTKSELDKRETLERVCRTLT
EQRTIMRKEVQGMKEDWRELENEIENLRMEINEPEAL*
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mRNA from alignment at tig00004418_pilon:2041593..2042756-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5482.t1 ID=Gchil5482.t1|Name=Gchil5482.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004418_pilon:2041593..2042756- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCACCGCAGCCAGCGACAAGGAATGATGAAGAAACACTACGCCA
GCTGTTGCGCGACCGTATCGCTCAGTTGGAAAGCAGAGAAGAAGAACCCC
CGAAGTCAGCAGATGAACAAGCCGCATACGAAGCATTTCATGTTGCGTCT
ACTGCTGCTAGAGCACTTGTGGCTGATCGAGAAATATCACCAGAAGAGAA
ACTACGAGTACTGCAGCTGATGTACAAAGATTGCATCTCAAATGTACGCG
ACTTGGAATACGACTTAGGGATGGAAGAAAAGAGATTAAGCGTTGCAGAA
TTGGACTACAGCGAACTTGGTGAAGAACTACGCAAAATTGAAGCATCGGC
GGAGAAGTTGAAGGCCCAATCGAAGGATCTTTCCAAAGAAAACAAAATTC
GACTCGAAGAATCAGCAAAAAAGAGCGCAGCAGAACGCGAAAAGCGAGAA
GAAATTTGCAAGAAGTTTGATGACGCCATGAAAGAAATTAACGCTCAACT
AAATCATGATGATGGGGGAGAAAACGAAGCAGATGATCCAACCGGAGAAT
TAGAGTCTCAACTAGACCAGCTTCAGACTGCATATGAAAAGAGAGAAACA
TTCTATGAGAAAACCTTAGAACAACCCGCAAAAGATGAAAAGAAGCATTT
CGAACGTTTACAGAGGGCGGAACGCGAGTTTGAAGAAGACCGATTAAATA
TTATGAAAGAGAGGAAACGTCTAGAAGAACTACGGAAACGCAGCGCGAAC
ACTAAGAAAGAAGTTGAAAAGTTTCTTATGAAACGAGATGAGATCGGAAA
GTGCAGACAAGAACGCGAAGACGCTCTCAACAGGCAGGCTGCCGACCTGA
AACGGCTTCAGCAGAGTACAGCCGGTTTACGAAAAGCAATGAGCAAACTG
GACAAAGAGACAGAGGAACTAAAAAACAAGTCGAAAGAAACTATTGCGCA
AGTAAAAGCTTGCGAAGATGAGCTAGAATTTTGGAAATCAAAGACGAAGA
GCGAATTGGACAAGAGGGAAACTCTCGAAAGGGTTTGTCGAACACTAACA
GAACAAAGAACAATAATGAGGAAAGAGGTTCAGGGTATGAAAGAGGATTG
GAGAGAGCTTGAGAATGAAATTGAAAACTTAAGAATGGAAATCAATGAAC
CTGAGGCTCTGTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2041593..2042756-

>Gchil5482.t1 ID=Gchil5482.t1|Name=Gchil5482.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00004418_pilon:2041593..2042756- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCACCGCAGCCAGCGACAAGGAATGATGAAGAAACACTACGCCA
GCTGTTGCGCGACCGTATCGCTCAGTTGGAAAGCAGAGAAGAAGAACCCC
CGAAGTCAGCAGATGAACAAGCCGCATACGAAGCATTTCATGTTGCGTCT
ACTGCTGCTAGAGCACTTGTGGCTGATCGAGAAATATCACCAGAAGAGAA
ACTACGAGTACTGCAGCTGATGTACAAAGATTGCATCTCAAATGTACGCG
ACTTGGAATACGACTTAGGGATGGAAGAAAAGAGATTAAGCGTTGCAGAA
TTGGACTACAGCGAACTTGGTGAAGAACTACGCAAAATTGAAGCATCGGC
GGAGAAGTTGAAGGCCCAATCGAAGGATCTTTCCAAAGAAAACAAAATTC
GACTCGAAGAATCAGCAAAAAAGAGCGCAGCAGAACGCGAAAAGCGAGAA
GAAATTTGCAAGAAGTTTGATGACGCCATGAAAGAAATTAACGCTCAACT
AAATCATGATGATGGGGGAGAAAACGAAGCAGATGATCCAACCGGAGAAT
TAGAGTCTCAACTAGACCAGCTTCAGACTGCATATGAAAAGAGAGAAACA
TTCTATGAGAAAACCTTAGAACAACCCGCAAAAGATGAAAAGAAGCATTT
CGAACGTTTACAGAGGGCGGAACGCGAGTTTGAAGAAGACCGATTAAATA
TTATGAAAGAGAGGAAACGTCTAGAAGAACTACGGAAACGCAGCGCGAAC
ACTAAGAAAGAAGTTGAAAAGTTTCTTATGAAACGAGATGAGATCGGAAA
GTGCAGACAAGAACGCGAAGACGCTCTCAACAGGCAGGCTGCCGACCTGA
AACGGCTTCAGCAGAGTACAGCCGGTTTACGAAAAGCAATGAGCAAACTG
GACAAAGAGACAGAGGAACTAAAAAACAAGTCGAAAGAAACTATTGCGCA
AGTAAAAGCTTGCGAAGATGAGCTAGAATTTTGGAAATCAAAGACGAAGA
GCGAATTGGACAAGAGGGAAACTCTCGAAAGGGTTTGTCGAACACTAACA
GAACAAAGAACAATAATGAGGAAAGAGGTTCAGGGTATGAAAGAGGATTG
GAGAGAGCTTGAGAATGAAATTGAAAACTTAAGAATGGAAATCAATGAAC
CTGAGGCTCTGTGA
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