Gchil5581.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5581.t1
Unique NameGchil5581.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2520244..2521557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1CDU0
PFAMsMFS_1
Max annot lvl4751|Fungi
Evalue5.35e-28
EggNOG OGsCOG0477@1|root,KOG4686@2759|Eukaryota,38NCS@33154|Opisthokonta,3NYNM@4751|Fungi,1GW31@112252|Fungi incertae sedis
DescriptionMajor Facilitator Superfamily
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5581Gchil5581Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2520244..2521557 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5581.t1.stop1Gchil5581.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2520244..2520246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5581.t1.CDS1Gchil5581.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2520244..2521557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5581.t1.exon1Gchil5581.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2520244..2521557 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5581.t1.start1Gchil5581.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2521555..2521557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5581.t1Gchil5581.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2520244..2521557 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5581.t1 ID=Gchil5581.t1|Name=Gchil5581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp
MTRRSKESYHTISPQDSETSPTDNVYKSSILLFTTSLITIGSHYNKHSLS
ALGPAIIQNLSLERTRYGLLFSSQAIPGIVLPIVSGVALSCFPYPPTAIL
LSSFIMLSTVLCAVAVGHSSYGLLLVGRFLFGLCDGALTTLQGAIIARCF
RSHSGIGFGIMLLISRLASFTGLTLPAIFYDGYGLNFAMWCSVFFCIPPF
LATIAYSRLNTQTISSPGAFSLGLLGSMIGKLTIPFWLISYDWLAVACVV
FTLLHFAPDAFQTSFGWNPLHAGLLSGGLLLFAGITSPLFGAIQDRTGRR
GYILTGCCALLALGAVLCSVSLMKSVGSATLLYIGLATIAIGFGAAPVTL
MSSLALSVDDSVVPVALGVYKAVENTGMSVIHVGVGALRDITGEYIASFL
MLGAVAGTGVVASYALSQSSKFVEHHCELPVDVEAAD*
back to top

spliced messenger RNA

>Gchil5581.t1 ID=Gchil5581.t1|Name=Gchil5581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00004418_pilon:2520244..2521557- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGGCGCTCAAAGGAAAGCTACCATACGATATCACCACAAGATTC
TGAAACTTCACCTACCGATAATGTGTACAAGAGCAGCATATTGCTTTTCA
CAACGTCGCTCATCACAATTGGATCTCATTATAATAAACATTCCCTCTCT
GCCCTGGGTCCAGCAATCATTCAAAACCTTAGTTTGGAACGAACCAGATA
TGGACTTTTGTTCTCTTCACAAGCAATTCCCGGCATTGTTTTGCCAATCG
TATCAGGTGTAGCACTGAGTTGCTTTCCTTATCCACCGACAGCTATTCTT
CTTTCCTCTTTTATCATGCTTTCCACAGTGCTATGTGCGGTTGCAGTTGG
GCATTCTTCGTACGGGCTTCTTTTGGTTGGTCGTTTTTTGTTTGGTTTGT
GCGATGGGGCACTTACAACTCTTCAAGGCGCCATTATCGCGCGATGCTTT
CGATCACACTCTGGAATTGGCTTTGGTATAATGCTTCTCATAAGTAGATT
GGCCTCTTTTACTGGGTTGACCCTTCCAGCTATATTCTATGATGGTTATG
GTCTGAACTTTGCCATGTGGTGTTCGGTGTTTTTCTGCATACCACCATTT
CTCGCAACCATAGCGTATTCCAGATTGAACACGCAAACTATTTCGTCTCC
TGGAGCGTTCTCCCTAGGTCTTTTGGGTTCTATGATAGGAAAGCTTACAA
TTCCATTTTGGCTCATATCGTATGATTGGTTAGCAGTTGCATGCGTCGTG
TTCACTCTGTTACACTTTGCTCCAGATGCTTTTCAAACATCATTTGGATG
GAATCCCTTGCATGCTGGTTTGCTTTCAGGAGGGTTGCTATTGTTCGCCG
GCATTACGTCTCCCTTGTTCGGAGCAATCCAGGACAGGACCGGGCGTCGA
GGGTACATTTTGACCGGCTGTTGTGCTTTGCTTGCCCTTGGCGCTGTCCT
GTGTTCAGTTTCGTTAATGAAATCAGTTGGATCTGCAACCCTTTTGTATA
TAGGATTAGCGACTATAGCAATAGGATTCGGAGCAGCTCCCGTGACCTTA
ATGAGTTCGTTGGCTCTTTCTGTTGACGATAGTGTTGTGCCCGTCGCGCT
TGGCGTATATAAGGCAGTTGAAAACACAGGAATGAGTGTGATACACGTGG
GAGTTGGTGCTTTACGAGATATTACCGGCGAGTACATTGCCTCGTTTCTT
ATGCTGGGCGCGGTTGCTGGGACTGGTGTTGTTGCTTCATACGCTCTCTC
GCAATCGTCAAAGTTTGTTGAGCATCACTGCGAATTGCCTGTTGACGTGG
AAGCTGCGGATTGA
back to top

protein sequence of Gchil5581.t1

>Gchil5581.t1 ID=Gchil5581.t1|Name=Gchil5581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=438bp
MTRRSKESYHTISPQDSETSPTDNVYKSSILLFTTSLITIGSHYNKHSLS
ALGPAIIQNLSLERTRYGLLFSSQAIPGIVLPIVSGVALSCFPYPPTAIL
LSSFIMLSTVLCAVAVGHSSYGLLLVGRFLFGLCDGALTTLQGAIIARCF
RSHSGIGFGIMLLISRLASFTGLTLPAIFYDGYGLNFAMWCSVFFCIPPF
LATIAYSRLNTQTISSPGAFSLGLLGSMIGKLTIPFWLISYDWLAVACVV
FTLLHFAPDAFQTSFGWNPLHAGLLSGGLLLFAGITSPLFGAIQDRTGRR
GYILTGCCALLALGAVLCSVSLMKSVGSATLLYIGLATIAIGFGAAPVTL
MSSLALSVDDSVVPVALGVYKAVENTGMSVIHVGVGALRDITGEYIASFL
MLGAVAGTGVVASYALSQSSKFVEHHCELPVDVEAAD*
back to top

mRNA from alignment at tig00004418_pilon:2520244..2521557-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5581.t1 ID=Gchil5581.t1|Name=Gchil5581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00004418_pilon:2520244..2521557- (Gracilaria chilensis NLEC103_M9 male)
ATGACTAGGCGCTCAAAGGAAAGCTACCATACGATATCACCACAAGATTC
TGAAACTTCACCTACCGATAATGTGTACAAGAGCAGCATATTGCTTTTCA
CAACGTCGCTCATCACAATTGGATCTCATTATAATAAACATTCCCTCTCT
GCCCTGGGTCCAGCAATCATTCAAAACCTTAGTTTGGAACGAACCAGATA
TGGACTTTTGTTCTCTTCACAAGCAATTCCCGGCATTGTTTTGCCAATCG
TATCAGGTGTAGCACTGAGTTGCTTTCCTTATCCACCGACAGCTATTCTT
CTTTCCTCTTTTATCATGCTTTCCACAGTGCTATGTGCGGTTGCAGTTGG
GCATTCTTCGTACGGGCTTCTTTTGGTTGGTCGTTTTTTGTTTGGTTTGT
GCGATGGGGCACTTACAACTCTTCAAGGCGCCATTATCGCGCGATGCTTT
CGATCACACTCTGGAATTGGCTTTGGTATAATGCTTCTCATAAGTAGATT
GGCCTCTTTTACTGGGTTGACCCTTCCAGCTATATTCTATGATGGTTATG
GTCTGAACTTTGCCATGTGGTGTTCGGTGTTTTTCTGCATACCACCATTT
CTCGCAACCATAGCGTATTCCAGATTGAACACGCAAACTATTTCGTCTCC
TGGAGCGTTCTCCCTAGGTCTTTTGGGTTCTATGATAGGAAAGCTTACAA
TTCCATTTTGGCTCATATCGTATGATTGGTTAGCAGTTGCATGCGTCGTG
TTCACTCTGTTACACTTTGCTCCAGATGCTTTTCAAACATCATTTGGATG
GAATCCCTTGCATGCTGGTTTGCTTTCAGGAGGGTTGCTATTGTTCGCCG
GCATTACGTCTCCCTTGTTCGGAGCAATCCAGGACAGGACCGGGCGTCGA
GGGTACATTTTGACCGGCTGTTGTGCTTTGCTTGCCCTTGGCGCTGTCCT
GTGTTCAGTTTCGTTAATGAAATCAGTTGGATCTGCAACCCTTTTGTATA
TAGGATTAGCGACTATAGCAATAGGATTCGGAGCAGCTCCCGTGACCTTA
ATGAGTTCGTTGGCTCTTTCTGTTGACGATAGTGTTGTGCCCGTCGCGCT
TGGCGTATATAAGGCAGTTGAAAACACAGGAATGAGTGTGATACACGTGG
GAGTTGGTGCTTTACGAGATATTACCGGCGAGTACATTGCCTCGTTTCTT
ATGCTGGGCGCGGTTGCTGGGACTGGTGTTGTTGCTTCATACGCTCTCTC
GCAATCGTCAAAGTTTGTTGAGCATCACTGCGAATTGCCTGTTGACGTGG
AAGCTGCGGATTGA
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:2520244..2521557-

>Gchil5581.t1 ID=Gchil5581.t1|Name=Gchil5581.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00004418_pilon:2520244..2521557- (Gracilaria chilensis NLEC103_M9 male)
ATGACTAGGCGCTCAAAGGAAAGCTACCATACGATATCACCACAAGATTC
TGAAACTTCACCTACCGATAATGTGTACAAGAGCAGCATATTGCTTTTCA
CAACGTCGCTCATCACAATTGGATCTCATTATAATAAACATTCCCTCTCT
GCCCTGGGTCCAGCAATCATTCAAAACCTTAGTTTGGAACGAACCAGATA
TGGACTTTTGTTCTCTTCACAAGCAATTCCCGGCATTGTTTTGCCAATCG
TATCAGGTGTAGCACTGAGTTGCTTTCCTTATCCACCGACAGCTATTCTT
CTTTCCTCTTTTATCATGCTTTCCACAGTGCTATGTGCGGTTGCAGTTGG
GCATTCTTCGTACGGGCTTCTTTTGGTTGGTCGTTTTTTGTTTGGTTTGT
GCGATGGGGCACTTACAACTCTTCAAGGCGCCATTATCGCGCGATGCTTT
CGATCACACTCTGGAATTGGCTTTGGTATAATGCTTCTCATAAGTAGATT
GGCCTCTTTTACTGGGTTGACCCTTCCAGCTATATTCTATGATGGTTATG
GTCTGAACTTTGCCATGTGGTGTTCGGTGTTTTTCTGCATACCACCATTT
CTCGCAACCATAGCGTATTCCAGATTGAACACGCAAACTATTTCGTCTCC
TGGAGCGTTCTCCCTAGGTCTTTTGGGTTCTATGATAGGAAAGCTTACAA
TTCCATTTTGGCTCATATCGTATGATTGGTTAGCAGTTGCATGCGTCGTG
TTCACTCTGTTACACTTTGCTCCAGATGCTTTTCAAACATCATTTGGATG
GAATCCCTTGCATGCTGGTTTGCTTTCAGGAGGGTTGCTATTGTTCGCCG
GCATTACGTCTCCCTTGTTCGGAGCAATCCAGGACAGGACCGGGCGTCGA
GGGTACATTTTGACCGGCTGTTGTGCTTTGCTTGCCCTTGGCGCTGTCCT
GTGTTCAGTTTCGTTAATGAAATCAGTTGGATCTGCAACCCTTTTGTATA
TAGGATTAGCGACTATAGCAATAGGATTCGGAGCAGCTCCCGTGACCTTA
ATGAGTTCGTTGGCTCTTTCTGTTGACGATAGTGTTGTGCCCGTCGCGCT
TGGCGTATATAAGGCAGTTGAAAACACAGGAATGAGTGTGATACACGTGG
GAGTTGGTGCTTTACGAGATATTACCGGCGAGTACATTGCCTCGTTTCTT
ATGCTGGGCGCGGTTGCTGGGACTGGTGTTGTTGCTTCATACGCTCTCTC
GCAATCGTCAAAGTTTGTTGAGCATCACTGCGAATTGCCTGTTGACGTGG
AAGCTGCGGATTGA
back to top