Gchil5446.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5446.t1
Unique Name	Gchil5446.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	214

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1754065..1754706 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706525.1
PFAMs	Ras
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04392
KEGG Pathway	ko04010,ko04013,ko04014,ko04015,ko04024,ko04062,ko04071,ko04145,ko04151,ko04310,ko04360,ko04370,ko04380,ko04510,ko04520,ko04530,ko04620,ko04650,ko04662,ko04664,ko04666,ko04670,ko04722,ko04810,ko04932,ko04933,ko04972,ko05014,ko05100,ko05120,ko05131,ko05132,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05231,ko05416,ko05418,map04010,map04013,map04014,map04015,map04024,map04062,map04071,map04145,map04151,map04310,map04360,map04370,map04380,map04510,map04520,map04530,map04620,map04650,map04662,map04664,map04666,map04670,map04722,map04810,map04932,map04933,map04972,map05014,map05100,map05120,map05131,map05132,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05231,map05416,map05418
Evalue	2.97e-70
EggNOG OGs	COG1100@1\|root,KOG0393@2759\|Eukaryota
Description	small GTPase mediated signal transduction
COG category	B
BRITE	ko00000,ko00001,ko04031,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5446	Gchil5446	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1754065..1754706 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5446.t1.start1	Gchil5446.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1754065..1754067 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5446.t1.CDS1	Gchil5446.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1754065..1754706 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5446.t1.exon1	Gchil5446.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1754065..1754706 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5446.t1.stop1	Gchil5446.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1754704..1754706 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5446.t1	Gchil5446.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1754065..1754706 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1754065..1754706+
coding sequence from alignment at tig00004418_pilon:1754065..1754706+

mRNA sequence

>Gchil5446.t1 ID=Gchil5446.t1|Name=Gchil5446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=214bp
MARGGHTANPHQNDDSLVRVKTVLVGDGSVGKTCMVYSYAENKFPTDYVP
TVFDTFTATVHVDGRPRTLELLDTAGQEDYERLRALSYHETDVFILCYSI
VHRPSLENIERRWAPEIKRVSPGSHMILCGCKMDLRQDPVEIERLRQRGE
APLSSEEGEKVSRSIGADSFFECSALTQEGLKDVFDEALLSAWDPLPKPR
RSAAAPTACCTIA*

spliced messenger RNA

>Gchil5446.t1 ID=Gchil5446.t1|Name=Gchil5446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00004418_pilon:1754065..1754706+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCGGCGGTCACACGGCTAATCCTCATCAAAATGATGACAGCCT
CGTTCGAGTGAAAACTGTTCTCGTTGGTGACGGTTCTGTCGGTAAGACCT
GTATGGTCTACAGCTATGCCGAGAACAAGTTTCCCACCGATTACGTCCCA
ACTGTCTTCGATACCTTCACCGCTACCGTCCACGTTGACGGCCGTCCACG
CACCCTCGAGCTGCTCGACACTGCTGGACAAGAAGACTACGAGCGCCTTC
GGGCTCTCAGCTATCATGAAACCGATGTATTCATTTTGTGTTACTCCATC
GTACATCGTCCCAGTTTAGAGAACATTGAGAGGCGTTGGGCACCGGAAAT
CAAGCGGGTGTCCCCTGGTTCCCACATGATTCTTTGTGGCTGCAAGATGG
ATCTTCGCCAAGACCCTGTGGAGATTGAACGTTTGAGGCAGCGTGGAGAG
GCACCTCTTTCCTCTGAGGAGGGCGAAAAGGTGTCTCGAAGCATCGGAGC
GGACTCGTTTTTCGAGTGTTCGGCACTCACGCAAGAGGGACTGAAAGACG
TTTTTGATGAGGCCCTGTTATCGGCTTGGGACCCGTTGCCCAAGCCGAGG
AGGTCGGCTGCCGCACCTACCGCATGCTGCACTATCGCATGA

protein sequence of Gchil5446.t1

>Gchil5446.t1 ID=Gchil5446.t1|Name=Gchil5446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=214bp
MARGGHTANPHQNDDSLVRVKTVLVGDGSVGKTCMVYSYAENKFPTDYVP
TVFDTFTATVHVDGRPRTLELLDTAGQEDYERLRALSYHETDVFILCYSI
VHRPSLENIERRWAPEIKRVSPGSHMILCGCKMDLRQDPVEIERLRQRGE
APLSSEEGEKVSRSIGADSFFECSALTQEGLKDVFDEALLSAWDPLPKPR
RSAAAPTACCTIA*

mRNA from alignment at tig00004418_pilon:1754065..1754706+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5446.t1 ID=Gchil5446.t1|Name=Gchil5446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00004418_pilon:1754065..1754706+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGCGGCGGTCACACGGCTAATCCTCATCAAAATGATGACAGCCT
CGTTCGAGTGAAAACTGTTCTCGTTGGTGACGGTTCTGTCGGTAAGACCT
GTATGGTCTACAGCTATGCCGAGAACAAGTTTCCCACCGATTACGTCCCA
ACTGTCTTCGATACCTTCACCGCTACCGTCCACGTTGACGGCCGTCCACG
CACCCTCGAGCTGCTCGACACTGCTGGACAAGAAGACTACGAGCGCCTTC
GGGCTCTCAGCTATCATGAAACCGATGTATTCATTTTGTGTTACTCCATC
GTACATCGTCCCAGTTTAGAGAACATTGAGAGGCGTTGGGCACCGGAAAT
CAAGCGGGTGTCCCCTGGTTCCCACATGATTCTTTGTGGCTGCAAGATGG
ATCTTCGCCAAGACCCTGTGGAGATTGAACGTTTGAGGCAGCGTGGAGAG
GCACCTCTTTCCTCTGAGGAGGGCGAAAAGGTGTCTCGAAGCATCGGAGC
GGACTCGTTTTTCGAGTGTTCGGCACTCACGCAAGAGGGACTGAAAGACG
TTTTTGATGAGGCCCTGTTATCGGCTTGGGACCCGTTGCCCAAGCCGAGG
AGGTCGGCTGCCGCACCTACCGCATGCTGCACTATCGCATGA

Coding sequence (CDS) from alignment at tig00004418_pilon:1754065..1754706+

>Gchil5446.t1 ID=Gchil5446.t1|Name=Gchil5446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00004418_pilon:1754065..1754706+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGCGGCGGTCACACGGCTAATCCTCATCAAAATGATGACAGCCT
CGTTCGAGTGAAAACTGTTCTCGTTGGTGACGGTTCTGTCGGTAAGACCT
GTATGGTCTACAGCTATGCCGAGAACAAGTTTCCCACCGATTACGTCCCA
ACTGTCTTCGATACCTTCACCGCTACCGTCCACGTTGACGGCCGTCCACG
CACCCTCGAGCTGCTCGACACTGCTGGACAAGAAGACTACGAGCGCCTTC
GGGCTCTCAGCTATCATGAAACCGATGTATTCATTTTGTGTTACTCCATC
GTACATCGTCCCAGTTTAGAGAACATTGAGAGGCGTTGGGCACCGGAAAT
CAAGCGGGTGTCCCCTGGTTCCCACATGATTCTTTGTGGCTGCAAGATGG
ATCTTCGCCAAGACCCTGTGGAGATTGAACGTTTGAGGCAGCGTGGAGAG
GCACCTCTTTCCTCTGAGGAGGGCGAAAAGGTGTCTCGAAGCATCGGAGC
GGACTCGTTTTTCGAGTGTTCGGCACTCACGCAAGAGGGACTGAAAGACG
TTTTTGATGAGGCCCTGTTATCGGCTTGGGACCCGTTGCCCAAGCCGAGG
AGGTCGGCTGCCGCACCTACCGCATGCTGCACTATCGCATGA