Gchil5539.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5539.t1
Unique NameGchil5539.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Homology
The following BLAST results are available for this feature:
BLAST of Gchil5539.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 292..296
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 163..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 297..314
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 315..333
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..162
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 334..362
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 363..375
NoneNo IPR availableTMHMMTMhelixcoord: 273..295
NoneNo IPR availableTMHMMTMhelixcoord: 341..363
NoneNo IPR availableTMHMMTMhelixcoord: 110..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2360620..2361747 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5539.t1Gchil5539.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2360620..2361747 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5539.t1 ID=Gchil5539.t1|Name=Gchil5539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MQPISSSLHLLHRAPAFVHTSFAERTVRKTSSRSTCGFRIKRYSVVDAFR
VRHFPVQNPILSRAQQVSPQPQSEGVTEQPKPPLSRPSWKDALPNKPLVN
RLLASRRLSLTFIITAALLYVTSACLIASTIANASLHGYQRILLFGLGVL
LPDFRHTLIYYLDAVQDLYQYKPGFRAFAFSSKTKPSTLDRPPISEKKSE
KPVPRPEFAWLKKASQGFHEHLRSGIQEGAEKFDKLVGVHGRELANGLTR
PIRETKTHFQQFTIGTDITLRKNVLIAAVSILLSIAGVFLSTMLDPSVGG
VSVMLASLLSSAVLSPRRHEMLALLNDGRIVISLVGTLSCVMLAFAPIIA
AYCFFLCCVALVTTRFTVDWLKVLK*
back to top