Gchil5539.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5539.t1
Unique NameGchil5539.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2360620..2361747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5539Gchil5539Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2360620..2361747 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5539.t1.start1Gchil5539.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2360620..2360622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5539.t1.CDS1Gchil5539.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2360620..2361747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5539.t1.exon1Gchil5539.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2360620..2361747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5539.t1.stop1Gchil5539.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2361745..2361747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5539.t1Gchil5539.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2360620..2361747 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5539.t1 ID=Gchil5539.t1|Name=Gchil5539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=376bp
MQPISSSLHLLHRAPAFVHTSFAERTVRKTSSRSTCGFRIKRYSVVDAFR
VRHFPVQNPILSRAQQVSPQPQSEGVTEQPKPPLSRPSWKDALPNKPLVN
RLLASRRLSLTFIITAALLYVTSACLIASTIANASLHGYQRILLFGLGVL
LPDFRHTLIYYLDAVQDLYQYKPGFRAFAFSSKTKPSTLDRPPISEKKSE
KPVPRPEFAWLKKASQGFHEHLRSGIQEGAEKFDKLVGVHGRELANGLTR
PIRETKTHFQQFTIGTDITLRKNVLIAAVSILLSIAGVFLSTMLDPSVGG
VSVMLASLLSSAVLSPRRHEMLALLNDGRIVISLVGTLSCVMLAFAPIIA
AYCFFLCCVALVTTRFTVDWLKVLK*
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spliced messenger RNA

>Gchil5539.t1 ID=Gchil5539.t1|Name=Gchil5539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00004418_pilon:2360620..2361747+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCATCTCAAGCTCACTTCACCTCCTGCACAGAGCTCCTGCTTT
CGTTCACACCTCTTTTGCCGAGCGAACGGTGCGAAAAACATCCTCACGCT
CTACATGTGGCTTTCGAATCAAGCGTTATTCAGTTGTCGATGCGTTCCGC
GTTCGCCATTTTCCCGTTCAGAATCCAATCCTCTCGCGTGCACAACAAGT
CTCGCCTCAACCGCAAAGTGAAGGCGTAACAGAACAACCGAAGCCACCAC
TTTCTCGCCCATCATGGAAAGATGCTCTACCAAACAAACCTCTTGTCAAC
CGCTTACTCGCTTCGAGGCGTCTTTCGCTAACATTTATAATAACTGCTGC
TCTTCTTTATGTTACGTCTGCTTGCCTCATTGCCTCTACCATTGCTAACG
CTTCTCTACATGGCTATCAAAGAATACTACTTTTTGGTTTGGGTGTACTA
CTACCGGACTTTAGGCATACCCTTATCTACTACTTAGACGCCGTCCAAGA
TCTCTACCAGTACAAGCCTGGGTTTCGTGCGTTTGCTTTTTCGTCGAAAA
CGAAGCCTAGCACTTTGGACCGGCCCCCGATCTCAGAAAAAAAGTCCGAA
AAACCAGTACCGAGACCAGAATTTGCTTGGTTGAAGAAAGCTTCGCAAGG
TTTTCACGAGCATCTGCGAAGCGGTATTCAGGAAGGAGCGGAAAAATTTG
ACAAGCTTGTTGGTGTTCACGGTCGAGAATTGGCGAACGGTTTAACACGC
CCAATCCGAGAGACAAAAACCCATTTTCAACAATTCACCATCGGAACAGA
TATTACTCTCAGAAAGAACGTGCTTATAGCTGCAGTTTCTATACTTCTTT
CAATCGCAGGGGTTTTTCTCAGCACTATGCTCGACCCGAGTGTGGGGGGT
GTTTCCGTGATGCTTGCGAGTCTGCTGTCGAGTGCTGTTTTGTCTCCGAG
ACGACACGAAATGCTTGCTCTTCTCAATGACGGGCGCATCGTGATATCGC
TTGTTGGCACTCTCTCTTGCGTTATGCTAGCCTTTGCACCAATTATCGCT
GCGTATTGTTTCTTTTTATGTTGCGTGGCTCTCGTTACGACGAGGTTCAC
TGTAGATTGGCTAAAAGTGCTCAAGTGA
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protein sequence of Gchil5539.t1

>Gchil5539.t1 ID=Gchil5539.t1|Name=Gchil5539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MQPISSSLHLLHRAPAFVHTSFAERTVRKTSSRSTCGFRIKRYSVVDAFR
VRHFPVQNPILSRAQQVSPQPQSEGVTEQPKPPLSRPSWKDALPNKPLVN
RLLASRRLSLTFIITAALLYVTSACLIASTIANASLHGYQRILLFGLGVL
LPDFRHTLIYYLDAVQDLYQYKPGFRAFAFSSKTKPSTLDRPPISEKKSE
KPVPRPEFAWLKKASQGFHEHLRSGIQEGAEKFDKLVGVHGRELANGLTR
PIRETKTHFQQFTIGTDITLRKNVLIAAVSILLSIAGVFLSTMLDPSVGG
VSVMLASLLSSAVLSPRRHEMLALLNDGRIVISLVGTLSCVMLAFAPIIA
AYCFFLCCVALVTTRFTVDWLKVLK*
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mRNA from alignment at tig00004418_pilon:2360620..2361747+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5539.t1 ID=Gchil5539.t1|Name=Gchil5539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00004418_pilon:2360620..2361747+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCCATCTCAAGCTCACTTCACCTCCTGCACAGAGCTCCTGCTTT
CGTTCACACCTCTTTTGCCGAGCGAACGGTGCGAAAAACATCCTCACGCT
CTACATGTGGCTTTCGAATCAAGCGTTATTCAGTTGTCGATGCGTTCCGC
GTTCGCCATTTTCCCGTTCAGAATCCAATCCTCTCGCGTGCACAACAAGT
CTCGCCTCAACCGCAAAGTGAAGGCGTAACAGAACAACCGAAGCCACCAC
TTTCTCGCCCATCATGGAAAGATGCTCTACCAAACAAACCTCTTGTCAAC
CGCTTACTCGCTTCGAGGCGTCTTTCGCTAACATTTATAATAACTGCTGC
TCTTCTTTATGTTACGTCTGCTTGCCTCATTGCCTCTACCATTGCTAACG
CTTCTCTACATGGCTATCAAAGAATACTACTTTTTGGTTTGGGTGTACTA
CTACCGGACTTTAGGCATACCCTTATCTACTACTTAGACGCCGTCCAAGA
TCTCTACCAGTACAAGCCTGGGTTTCGTGCGTTTGCTTTTTCGTCGAAAA
CGAAGCCTAGCACTTTGGACCGGCCCCCGATCTCAGAAAAAAAGTCCGAA
AAACCAGTACCGAGACCAGAATTTGCTTGGTTGAAGAAAGCTTCGCAAGG
TTTTCACGAGCATCTGCGAAGCGGTATTCAGGAAGGAGCGGAAAAATTTG
ACAAGCTTGTTGGTGTTCACGGTCGAGAATTGGCGAACGGTTTAACACGC
CCAATCCGAGAGACAAAAACCCATTTTCAACAATTCACCATCGGAACAGA
TATTACTCTCAGAAAGAACGTGCTTATAGCTGCAGTTTCTATACTTCTTT
CAATCGCAGGGGTTTTTCTCAGCACTATGCTCGACCCGAGTGTGGGGGGT
GTTTCCGTGATGCTTGCGAGTCTGCTGTCGAGTGCTGTTTTGTCTCCGAG
ACGACACGAAATGCTTGCTCTTCTCAATGACGGGCGCATCGTGATATCGC
TTGTTGGCACTCTCTCTTGCGTTATGCTAGCCTTTGCACCAATTATCGCT
GCGTATTGTTTCTTTTTATGTTGCGTGGCTCTCGTTACGACGAGGTTCAC
TGTAGATTGGCTAAAAGTGCTCAAGTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2360620..2361747+

>Gchil5539.t1 ID=Gchil5539.t1|Name=Gchil5539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00004418_pilon:2360620..2361747+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCCATCTCAAGCTCACTTCACCTCCTGCACAGAGCTCCTGCTTT
CGTTCACACCTCTTTTGCCGAGCGAACGGTGCGAAAAACATCCTCACGCT
CTACATGTGGCTTTCGAATCAAGCGTTATTCAGTTGTCGATGCGTTCCGC
GTTCGCCATTTTCCCGTTCAGAATCCAATCCTCTCGCGTGCACAACAAGT
CTCGCCTCAACCGCAAAGTGAAGGCGTAACAGAACAACCGAAGCCACCAC
TTTCTCGCCCATCATGGAAAGATGCTCTACCAAACAAACCTCTTGTCAAC
CGCTTACTCGCTTCGAGGCGTCTTTCGCTAACATTTATAATAACTGCTGC
TCTTCTTTATGTTACGTCTGCTTGCCTCATTGCCTCTACCATTGCTAACG
CTTCTCTACATGGCTATCAAAGAATACTACTTTTTGGTTTGGGTGTACTA
CTACCGGACTTTAGGCATACCCTTATCTACTACTTAGACGCCGTCCAAGA
TCTCTACCAGTACAAGCCTGGGTTTCGTGCGTTTGCTTTTTCGTCGAAAA
CGAAGCCTAGCACTTTGGACCGGCCCCCGATCTCAGAAAAAAAGTCCGAA
AAACCAGTACCGAGACCAGAATTTGCTTGGTTGAAGAAAGCTTCGCAAGG
TTTTCACGAGCATCTGCGAAGCGGTATTCAGGAAGGAGCGGAAAAATTTG
ACAAGCTTGTTGGTGTTCACGGTCGAGAATTGGCGAACGGTTTAACACGC
CCAATCCGAGAGACAAAAACCCATTTTCAACAATTCACCATCGGAACAGA
TATTACTCTCAGAAAGAACGTGCTTATAGCTGCAGTTTCTATACTTCTTT
CAATCGCAGGGGTTTTTCTCAGCACTATGCTCGACCCGAGTGTGGGGGGT
GTTTCCGTGATGCTTGCGAGTCTGCTGTCGAGTGCTGTTTTGTCTCCGAG
ACGACACGAAATGCTTGCTCTTCTCAATGACGGGCGCATCGTGATATCGC
TTGTTGGCACTCTCTCTTGCGTTATGCTAGCCTTTGCACCAATTATCGCT
GCGTATTGTTTCTTTTTATGTTGCGTGGCTCTCGTTACGACGAGGTTCAC
TGTAGATTGGCTAAAAGTGCTCAAGTGA
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