Gchil5724.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5724.t1
Unique NameGchil5724.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Homology
BLAST of Gchil5724.t1 vs. uniprot
Match: A0A2V3IFQ2_9FLOR (Transcription initiation factor TFIID subunit 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFQ2_9FLOR)

HSP 1 Score: 199 bits (506), Expect = 1.070e-61
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0
Query:   67 PAPEPE-ADDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVPSTAN 190
            P PE E  DDEDAPLDLMKMREFEFSQVS LTPAQLRRYEQYRRSDLKS KVRKVLTALNPMMQK S+PYVIA+KGLAKLFVGDVVETALEVRKERGE GALTP+QIREAYRRLR AG +P T N
Sbjct:   67 PPPEVEDPDDEDAPLDLMKMREFEFSQVSTLTPAQLRRYEQYRRSDLKSVKVRKVLTALNPMMQKASDPYVIAVKGLAKLFVGDVVETALEVRKERGEVGALTPKQIREAYRRLRNAGAMPCTYN 191          
BLAST of Gchil5724.t1 vs. uniprot
Match: R7Q4E5_CHOCR (TAFII28 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4E5_CHOCR)

HSP 1 Score: 144 bits (363), Expect = 5.890e-40
Identity = 74/117 (63.25%), Postives = 94/117 (80.34%), Query Frame = 0
Query:   72 EADDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVPST 188
            E+ +E+APLDL     +E  +V+ LT  Q RRYEQYRRSDLK+ KV+KVL + NP +QK S+ Y+IA+KGLAKLFVGDVVETAL+V+ + G+ GAL P+ +REAYRRLRR+GVVPST
Sbjct:   85 ESGEEEAPLDLASFARYEHGEVAKLTAVQQRRYEQYRRSDLKNPKVKKVLVSYNPTLQKASDLYIIAVKGLAKLFVGDVVETALDVKNQMGDKGALQPKHLREAYRRLRRSGVVPST 201          
BLAST of Gchil5724.t1 vs. uniprot
Match: A0A7S3ENX1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENX1_9RHOD)

HSP 1 Score: 109 bits (273), Expect = 1.280e-26
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 0
Query:   62 KKKSNPAPEPEADDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALN--PMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVV 185
            KK+    P+   DD+D   DL ++ E +  QVS L P Q+ RYE YR+SDLK  K++K+LT+ N  P+    S+P++IA+KGLAK+FVG+VVE AL+++KE G+ GAL P+ +REAYRR+ R G V
Sbjct:   58 KKQIPVVPDDNYDDKD--FDLQRLMEMQSRQVSQLGPEQMNRYEFYRKSDLKQHKIKKLLTSRNLIPVTIPPSDPFIIAVKGLAKVFVGEVVENALDIQKEWGDAGALHPKHLREAYRRMDRDGNV 181          
BLAST of Gchil5724.t1 vs. uniprot
Match: A0A7S1XG47_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XG47_9RHOD)

HSP 1 Score: 107 bits (266), Expect = 1.380e-25
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 0
Query:   81 DLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKV--SEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRR 181
            DL K ++ E+  V+  + AQ+RRYE Y+RSDLK  K++K+L A+NP       S+P +IAIKGLAKLFVG+VVE ALEV +ER + G L P+ IREAYRR+RR
Sbjct:   76 DLEKAQKHEYEVVNTFSEAQMRRYESYKRSDLKKEKMKKILMAINPAFGTTAPSDPVMIAIKGLAKLFVGEVVEAALEVMRERDQDGPLLPQHIREAYRRIRR 178          
BLAST of Gchil5724.t1 vs. uniprot
Match: A0A1X6NJQ9_PORUM (TAFII28 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJQ9_PORUM)

HSP 1 Score: 94.0 bits (232), Expect = 1.610e-21
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query:  101 LRRYEQYRRSDLKSSKVRKVLTALNPMMQKV--SEPYVIAIKGLAKLFVGDVVETALEV------RKERGETGALTP----RQIREAYRRLRRAGVVPST 188
            +RRYE YRRSDLK  +V+KVLT ++P+  K+  S+ Y+IA+KGLAKLFVGDVVETA  V      RKE G+TG   P    + +REAYRRLRR G  P+T
Sbjct:    1 MRRYEAYRRSDLKKERVKKVLTGISPVFDKMAPSDAYIIAVKGLAKLFVGDVVETAATVAAEWGDRKE-GDTGLNAPPLQTKHLREAYRRLRRDGAFPTT 99          
BLAST of Gchil5724.t1 vs. uniprot
Match: M2XYV0_GALSU (Transcription initiation factor TFIID subunit D9 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYV0_GALSU)

HSP 1 Score: 95.1 bits (235), Expect = 2.800e-21
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0
Query:   74 DDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPM--MQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVP 186
            D+ED  + L K RE E    SNL      R+E YR+ DL  +KV+K+++ +NP   M +   P++IA+KGL KL+ G++VE A+++R ERGE GA+ P  +REAYRR+++AG  P
Sbjct:   46 DEEDEQVRLWKQREREI--FSNLNEDDQERFEYYRQGDLDKNKVKKLVSTVNPALSMMQPDNPFIIAVKGLGKLYAGELVEMAVDIRNERGEQGAVRPVHLREAYRRMQKAGKTP 158          
BLAST of Gchil5724.t1 vs. uniprot
Match: B7QLL3_IXOSC (Transcription initiation factor TFII-D subunit, putative n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7QLL3_IXOSC)

HSP 1 Score: 85.1 bits (209), Expect = 9.970e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   93 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVPS 187
            VSN + AQL RYE YRRS    + V++++ ++      VS+  VIA+ G+AK+FVG+VVE AL+V + +GE G L PR +REA RRLR+ G +P+
Sbjct:   39 VSNFSEAQLNRYEMYRRSAFPKAAVKRLVQSITGC--SVSQNVVIAVSGIAKVFVGEVVEEALDVLERQGEAGPLQPRHLREAVRRLRKGGFIPN 131          
BLAST of Gchil5724.t1 vs. uniprot
Match: UPI0008F9CA38 (transcription initiation factor TFIID subunit 11 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9CA38)

HSP 1 Score: 86.3 bits (212), Expect = 1.640e-17
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 0
Query:   93 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVPST 188
            VSN T  QL RYE YRRS    + +++++  +      VS+  VIA+ G+AK+FVG+VVE AL+V +E+ ETG L P+ +REA RRLR  G++P+T
Sbjct:  102 VSNFTEEQLDRYEMYRRSAFPKAAIKRLMQTITA--NSVSQNVVIAVSGIAKVFVGEVVEQALDVMEEQNETGPLQPKHLREAVRRLRAQGMIPNT 195          
BLAST of Gchil5724.t1 vs. uniprot
Match: A0A6P7WR79_IXOSC (transcription initiation factor TFIID subunit 11 isoform X1 n=3 Tax=Ixodes TaxID=6944 RepID=A0A6P7WR79_IXOSC)

HSP 1 Score: 85.1 bits (209), Expect = 2.870e-17
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   93 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVPS 187
            VSN + AQL RYE YRRS    + V++++ ++      VS+  VIA+ G+AK+FVG+VVE AL+V + +GE G L PR +REA RRLR+ G +P+
Sbjct:   83 VSNFSEAQLNRYEMYRRSAFPKAAVKRLVQSITGC--SVSQNVVIAVSGIAKVFVGEVVEEALDVLERQGEAGPLQPRHLREAVRRLRKGGFIPN 175          
BLAST of Gchil5724.t1 vs. uniprot
Match: UPI00083F0C90 (transcription initiation factor TFIID subunit 11 isoform X2 n=1 Tax=Drosophila arizonae TaxID=7263 RepID=UPI00083F0C90)

HSP 1 Score: 82.8 bits (203), Expect = 3.090e-17
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 0
Query:   93 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGVVP 186
            +SN T  QL RYE YRRS    + V++++  +      VS+  VIA+ G+AK+FVG+VVE AL+V +++GE+GAL P+ IREA RRLRR G +P
Sbjct:    1 MSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFVGEVVEEALDVMEQQGESGALQPKFIREAVRRLRRKGRMP 92          
The following BLAST results are available for this feature:
BLAST of Gchil5724.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFQ2_9FLOR1.070e-6187.20Transcription initiation factor TFIID subunit 11 n... [more]
R7Q4E5_CHOCR5.890e-4063.25TAFII28 domain-containing protein n=1 Tax=Chondrus... [more]
A0A7S3ENX1_9RHOD1.280e-2650.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1XG47_9RHOD1.380e-2556.31Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NJQ9_PORUM1.610e-2157.00TAFII28 domain-containing protein n=1 Tax=Porphyra... [more]
M2XYV0_GALSU2.800e-2145.22Transcription initiation factor TFIID subunit D9 i... [more]
B7QLL3_IXOSC9.970e-1848.42Transcription initiation factor TFII-D subunit, pu... [more]
UPI0008F9CA381.640e-1747.92transcription initiation factor TFIID subunit 11 n... [more]
A0A6P7WR79_IXOSC2.870e-1748.42transcription initiation factor TFIID subunit 11 i... [more]
UPI00083F0C903.090e-1750.00transcription initiation factor TFIID subunit 11 i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006809TAFII28-like protein domainPFAMPF04719TAFII28coord: 93..178
e-value: 8.7E-27
score: 93.0
IPR006809TAFII28-like protein domainCDDcd08048TAF11coord: 96..180
e-value: 1.43206E-30
score: 105.341
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 96..186
e-value: 1.0E-26
score: 94.8
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 97..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..32
NoneNo IPR availablePANTHERPTHR13218:SF8TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11coord: 16..188
IPR045127Transcription initiation factor TFIID subunit 11-likePANTHERPTHR13218TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATEDcoord: 16..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1121893..1122486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5724.t1Gchil5724.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000015_pilon 1121893..1122486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5724.t1 ID=Gchil5724.t1|Name=Gchil5724.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MQSPEIDKTMRPIEDSSMQIEDESDPIEHGSEANEPEAVTTKGNEYKNEA
ESAEPPLKEALKKKSNPAPEPEADDEDAPLDLMKMREFEFSQVSNLTPAQ
LRRYEQYRRSDLKSSKVRKVLTALNPMMQKVSEPYVIAIKGLAKLFVGDV
VETALEVRKERGETGALTPRQIREAYRRLRRAGVVPSTANWSEGSLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006809TAFII28_dom
IPR009072Histone-fold
IPR045127TAF11-like