Gchil5441.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5441.t1
Unique NameGchil5441.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1742816..1743835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G764
Preferred nameTAB2
PFAMsDUF1092
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009639,GO:0009640,GO:0009657,GO:0009658,GO:0009704,GO:0009791,GO:0009987,GO:0010467,GO:0015979,GO:0016043,GO:0019538,GO:0019684,GO:0022607,GO:0032501,GO:0032502,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0048856,GO:0050896,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue1.72e-79
EggNOG OGs2CDXI@1|root,2QVJR@2759|Eukaryota
Descriptionphotosystem I assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5441Gchil5441Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1742816..1743835 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5441.t1.stop1Gchil5441.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1742816..1742818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5441.t1.CDS1Gchil5441.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1742816..1743835 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5441.t1.exon1Gchil5441.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1742816..1743835 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5441.t1.start1Gchil5441.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1743833..1743835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5441.t1Gchil5441.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1742816..1743835 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5441.t1 ID=Gchil5441.t1|Name=Gchil5441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=340bp
MSTPPSFVASLYVPRRAHTRAAQISRCAAARRKLSRSVASRVHRVAIRSV
LPVPLAPTTSDVWELDFYSRPVVGLDGKKLWELIITDSLASFEHVEAIPN
SLVNSRELRNRVQAVIDSAPTKPTTIRFFRSQMFNMINIALSDIDVQLSP
SRRTYALYQLLKYRQQNVYKNMPGFKQALLTNTSIFTSLDMNVPQPLPDA
LRCDSFAFGNLPLAQLQHFFAHADPDNYFGDACLADPQLPPDVLVPGMII
FSKRARALSAWLSGTELAFIRVVFEKQQILLECGLSTVYTFAQVTKDVKQ
DVRQFQQAKQKTSGIHFLAVQTDQKTDEIEGMWLLSELL*
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spliced messenger RNA

>Gchil5441.t1 ID=Gchil5441.t1|Name=Gchil5441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004418_pilon:1742816..1743835- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGCCGCCGTCATTTGTCGCATCTCTATATGTACCGCGGCGCGC
TCACACACGCGCCGCACAAATCTCGCGCTGCGCTGCCGCGCGTCGAAAAC
TGTCTAGAAGCGTTGCTTCGCGTGTGCATCGCGTCGCGATTCGCAGCGTG
CTTCCGGTGCCGCTGGCGCCAACCACGTCCGACGTGTGGGAGCTTGATTT
CTACTCGCGTCCCGTCGTTGGTTTGGACGGCAAGAAGCTGTGGGAGCTCA
TTATCACCGACTCACTCGCGTCGTTTGAGCATGTGGAGGCCATTCCCAAC
TCGCTGGTCAATTCGCGCGAGTTGCGCAACAGAGTGCAGGCTGTGATTGA
CTCTGCGCCCACCAAGCCCACCACCATTCGTTTCTTCCGCTCGCAGATGT
TCAACATGATCAACATTGCGCTCTCCGACATTGACGTGCAACTGTCGCCG
TCCAGAAGGACGTATGCGCTGTACCAGTTGCTCAAGTACCGCCAGCAAAA
CGTGTACAAAAACATGCCTGGCTTCAAGCAAGCGCTGTTGACAAACACCT
CCATTTTCACCTCGCTTGACATGAACGTACCGCAGCCGCTGCCAGATGCG
CTGCGATGCGACAGTTTTGCGTTTGGAAACTTGCCGCTCGCTCAGCTGCA
GCACTTTTTTGCCCATGCCGACCCGGACAACTACTTTGGCGACGCATGTC
TCGCCGACCCACAACTGCCACCCGACGTGCTGGTGCCCGGCATGATCATA
TTCTCCAAGCGAGCGAGAGCACTGTCGGCATGGTTGAGCGGTACCGAACT
GGCATTTATAAGGGTTGTGTTCGAAAAGCAACAAATCCTATTAGAATGTG
GTCTAAGTACAGTGTACACATTTGCACAAGTCACCAAAGATGTCAAACAA
GACGTTCGCCAATTTCAACAAGCTAAACAAAAAACCAGCGGCATTCACTT
CCTTGCCGTGCAAACCGACCAAAAAACGGACGAGATAGAAGGAATGTGGT
TGCTTTCCGAGTTACTATGA
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protein sequence of Gchil5441.t1

>Gchil5441.t1 ID=Gchil5441.t1|Name=Gchil5441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MSTPPSFVASLYVPRRAHTRAAQISRCAAARRKLSRSVASRVHRVAIRSV
LPVPLAPTTSDVWELDFYSRPVVGLDGKKLWELIITDSLASFEHVEAIPN
SLVNSRELRNRVQAVIDSAPTKPTTIRFFRSQMFNMINIALSDIDVQLSP
SRRTYALYQLLKYRQQNVYKNMPGFKQALLTNTSIFTSLDMNVPQPLPDA
LRCDSFAFGNLPLAQLQHFFAHADPDNYFGDACLADPQLPPDVLVPGMII
FSKRARALSAWLSGTELAFIRVVFEKQQILLECGLSTVYTFAQVTKDVKQ
DVRQFQQAKQKTSGIHFLAVQTDQKTDEIEGMWLLSELL*
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mRNA from alignment at tig00004418_pilon:1742816..1743835-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5441.t1 ID=Gchil5441.t1|Name=Gchil5441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004418_pilon:1742816..1743835- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACGCCGCCGTCATTTGTCGCATCTCTATATGTACCGCGGCGCGC
TCACACACGCGCCGCACAAATCTCGCGCTGCGCTGCCGCGCGTCGAAAAC
TGTCTAGAAGCGTTGCTTCGCGTGTGCATCGCGTCGCGATTCGCAGCGTG
CTTCCGGTGCCGCTGGCGCCAACCACGTCCGACGTGTGGGAGCTTGATTT
CTACTCGCGTCCCGTCGTTGGTTTGGACGGCAAGAAGCTGTGGGAGCTCA
TTATCACCGACTCACTCGCGTCGTTTGAGCATGTGGAGGCCATTCCCAAC
TCGCTGGTCAATTCGCGCGAGTTGCGCAACAGAGTGCAGGCTGTGATTGA
CTCTGCGCCCACCAAGCCCACCACCATTCGTTTCTTCCGCTCGCAGATGT
TCAACATGATCAACATTGCGCTCTCCGACATTGACGTGCAACTGTCGCCG
TCCAGAAGGACGTATGCGCTGTACCAGTTGCTCAAGTACCGCCAGCAAAA
CGTGTACAAAAACATGCCTGGCTTCAAGCAAGCGCTGTTGACAAACACCT
CCATTTTCACCTCGCTTGACATGAACGTACCGCAGCCGCTGCCAGATGCG
CTGCGATGCGACAGTTTTGCGTTTGGAAACTTGCCGCTCGCTCAGCTGCA
GCACTTTTTTGCCCATGCCGACCCGGACAACTACTTTGGCGACGCATGTC
TCGCCGACCCACAACTGCCACCCGACGTGCTGGTGCCCGGCATGATCATA
TTCTCCAAGCGAGCGAGAGCACTGTCGGCATGGTTGAGCGGTACCGAACT
GGCATTTATAAGGGTTGTGTTCGAAAAGCAACAAATCCTATTAGAATGTG
GTCTAAGTACAGTGTACACATTTGCACAAGTCACCAAAGATGTCAAACAA
GACGTTCGCCAATTTCAACAAGCTAAACAAAAAACCAGCGGCATTCACTT
CCTTGCCGTGCAAACCGACCAAAAAACGGACGAGATAGAAGGAATGTGGT
TGCTTTCCGAGTTACTATGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1742816..1743835-

>Gchil5441.t1 ID=Gchil5441.t1|Name=Gchil5441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00004418_pilon:1742816..1743835- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACGCCGCCGTCATTTGTCGCATCTCTATATGTACCGCGGCGCGC
TCACACACGCGCCGCACAAATCTCGCGCTGCGCTGCCGCGCGTCGAAAAC
TGTCTAGAAGCGTTGCTTCGCGTGTGCATCGCGTCGCGATTCGCAGCGTG
CTTCCGGTGCCGCTGGCGCCAACCACGTCCGACGTGTGGGAGCTTGATTT
CTACTCGCGTCCCGTCGTTGGTTTGGACGGCAAGAAGCTGTGGGAGCTCA
TTATCACCGACTCACTCGCGTCGTTTGAGCATGTGGAGGCCATTCCCAAC
TCGCTGGTCAATTCGCGCGAGTTGCGCAACAGAGTGCAGGCTGTGATTGA
CTCTGCGCCCACCAAGCCCACCACCATTCGTTTCTTCCGCTCGCAGATGT
TCAACATGATCAACATTGCGCTCTCCGACATTGACGTGCAACTGTCGCCG
TCCAGAAGGACGTATGCGCTGTACCAGTTGCTCAAGTACCGCCAGCAAAA
CGTGTACAAAAACATGCCTGGCTTCAAGCAAGCGCTGTTGACAAACACCT
CCATTTTCACCTCGCTTGACATGAACGTACCGCAGCCGCTGCCAGATGCG
CTGCGATGCGACAGTTTTGCGTTTGGAAACTTGCCGCTCGCTCAGCTGCA
GCACTTTTTTGCCCATGCCGACCCGGACAACTACTTTGGCGACGCATGTC
TCGCCGACCCACAACTGCCACCCGACGTGCTGGTGCCCGGCATGATCATA
TTCTCCAAGCGAGCGAGAGCACTGTCGGCATGGTTGAGCGGTACCGAACT
GGCATTTATAAGGGTTGTGTTCGAAAAGCAACAAATCCTATTAGAATGTG
GTCTAAGTACAGTGTACACATTTGCACAAGTCACCAAAGATGTCAAACAA
GACGTTCGCCAATTTCAACAAGCTAAACAAAAAACCAGCGGCATTCACTT
CCTTGCCGTGCAAACCGACCAAAAAACGGACGAGATAGAAGGAATGTGGT
TGCTTTCCGAGTTACTATGA
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