Gchil6798.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6798.t1
Unique NameGchil6798.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1207375..1208517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703459.1
PFAMsIso_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00114
KEGG koko:K00030
KEGG ReactionR00709
KEGG Pathwayko00020,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004448,GO:0004449,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009060,GO:0009507,GO:0009536,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017076,GO:0017144,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue8.16e-164
EggNOG OGsCOG0473@1|root,KOG0785@2759|Eukaryota
EC1.1.1.41
Descriptionisocitrate dehydrogenase (NAD ) activity
COG categoryCE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6798Gchil6798Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1207375..1208517 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6798.t1.stop1Gchil6798.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1207375..1207377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6798.t1.CDS1Gchil6798.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1207375..1208517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6798.t1.exon1Gchil6798.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1207375..1208517 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6798.t1.start1Gchil6798.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1208515..1208517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6798.t1Gchil6798.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1207375..1208517 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6798.t1 ID=Gchil6798.t1|Name=Gchil6798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp
MMRYLHNSSAALSRFRSAFHRYSPCSSNCAAAFSTSSESRQYTVTLFPGD
GIGPEISESVKRIFSAADVPITWETHVIDIHSAKPGEDLISKAALDSVRR
NGFGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCISMPGVDTLYKDV
DVVTVRENTEGEYSGLEHTVYPGVVESLKVITRDASMRVCEYAFDYAIKN
NRKRVTAVHKASVMKLSDGLFLKCAREVAEKHKDSGVEFQTLLIDNAASL
LVSNPSLLDVMVMPNLYGDIISDLCAGLIGGLGLTPSGNMGTACMLAEAV
HGTAPDIAGKNMANPTALLMSALMMLRHMDLRTEANLIEQSVHSVLREGS
VRTGDIGGSSSTTAYTDAIIKQMDERRALS*
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spliced messenger RNA

>Gchil6798.t1 ID=Gchil6798.t1|Name=Gchil6798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00004416_pilon:1207375..1208517- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGATACCTCCATAATAGTTCAGCAGCGTTATCTCGTTTCAGATC
TGCTTTTCATCGTTACTCCCCCTGCAGCTCAAACTGCGCTGCTGCTTTTT
CTACCTCTTCTGAATCTCGGCAATATACGGTCACTCTCTTCCCCGGTGAT
GGGATCGGCCCAGAGATCTCAGAGTCTGTCAAACGTATCTTCAGTGCAGC
TGATGTGCCCATCACATGGGAGACTCATGTCATCGATATACATTCCGCCA
AACCGGGTGAGGATCTAATCAGCAAGGCGGCACTTGATTCCGTTCGTCGA
AATGGGTTTGGGCTCAAAGGTCCAATGGCTACCCCCATCGGCAAGGGCCA
TAGAAGTCTCAATCTCACTCTTCGAAAGGAACTTGGCCTCTACGCCAATG
TTCGACCGTGTATTTCAATGCCAGGAGTTGACACCCTTTACAAAGATGTT
GACGTGGTCACTGTTCGGGAAAACACGGAAGGCGAGTACAGTGGACTGGA
GCACACAGTATATCCTGGCGTCGTAGAAAGTCTTAAAGTTATCACTCGAG
ACGCATCCATGCGCGTGTGTGAGTATGCCTTTGATTATGCTATTAAGAAT
AACCGTAAGAGAGTTACTGCTGTCCATAAGGCCTCTGTCATGAAGCTCTC
CGATGGTTTATTCCTTAAATGTGCGCGCGAAGTAGCAGAAAAACACAAAG
ACTCGGGGGTCGAATTCCAGACGCTTCTCATCGACAACGCCGCATCTCTA
CTTGTATCAAACCCATCCCTTCTGGACGTTATGGTCATGCCGAACCTCTA
TGGTGATATAATATCCGACCTTTGCGCTGGTCTTATCGGTGGCCTTGGGC
TCACACCGTCCGGGAACATGGGCACTGCATGCATGCTGGCGGAGGCCGTC
CACGGTACCGCACCAGATATTGCTGGGAAGAATATGGCAAATCCTACGGC
TTTGCTCATGAGCGCTTTGATGATGTTGCGCCACATGGATCTTCGCACTG
AGGCCAATCTGATCGAGCAAAGCGTCCATAGTGTTCTAAGAGAAGGGTCC
GTACGGACGGGTGACATTGGTGGTTCGTCTTCCACTACCGCGTATACTGA
CGCCATCATTAAGCAGATGGATGAGAGAAGGGCTTTGAGCTAA
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protein sequence of Gchil6798.t1

>Gchil6798.t1 ID=Gchil6798.t1|Name=Gchil6798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=381bp
MMRYLHNSSAALSRFRSAFHRYSPCSSNCAAAFSTSSESRQYTVTLFPGD
GIGPEISESVKRIFSAADVPITWETHVIDIHSAKPGEDLISKAALDSVRR
NGFGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCISMPGVDTLYKDV
DVVTVRENTEGEYSGLEHTVYPGVVESLKVITRDASMRVCEYAFDYAIKN
NRKRVTAVHKASVMKLSDGLFLKCAREVAEKHKDSGVEFQTLLIDNAASL
LVSNPSLLDVMVMPNLYGDIISDLCAGLIGGLGLTPSGNMGTACMLAEAV
HGTAPDIAGKNMANPTALLMSALMMLRHMDLRTEANLIEQSVHSVLREGS
VRTGDIGGSSSTTAYTDAIIKQMDERRALS*
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mRNA from alignment at tig00004416_pilon:1207375..1208517-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6798.t1 ID=Gchil6798.t1|Name=Gchil6798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00004416_pilon:1207375..1208517- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCGATACCTCCATAATAGTTCAGCAGCGTTATCTCGTTTCAGATC
TGCTTTTCATCGTTACTCCCCCTGCAGCTCAAACTGCGCTGCTGCTTTTT
CTACCTCTTCTGAATCTCGGCAATATACGGTCACTCTCTTCCCCGGTGAT
GGGATCGGCCCAGAGATCTCAGAGTCTGTCAAACGTATCTTCAGTGCAGC
TGATGTGCCCATCACATGGGAGACTCATGTCATCGATATACATTCCGCCA
AACCGGGTGAGGATCTAATCAGCAAGGCGGCACTTGATTCCGTTCGTCGA
AATGGGTTTGGGCTCAAAGGTCCAATGGCTACCCCCATCGGCAAGGGCCA
TAGAAGTCTCAATCTCACTCTTCGAAAGGAACTTGGCCTCTACGCCAATG
TTCGACCGTGTATTTCAATGCCAGGAGTTGACACCCTTTACAAAGATGTT
GACGTGGTCACTGTTCGGGAAAACACGGAAGGCGAGTACAGTGGACTGGA
GCACACAGTATATCCTGGCGTCGTAGAAAGTCTTAAAGTTATCACTCGAG
ACGCATCCATGCGCGTGTGTGAGTATGCCTTTGATTATGCTATTAAGAAT
AACCGTAAGAGAGTTACTGCTGTCCATAAGGCCTCTGTCATGAAGCTCTC
CGATGGTTTATTCCTTAAATGTGCGCGCGAAGTAGCAGAAAAACACAAAG
ACTCGGGGGTCGAATTCCAGACGCTTCTCATCGACAACGCCGCATCTCTA
CTTGTATCAAACCCATCCCTTCTGGACGTTATGGTCATGCCGAACCTCTA
TGGTGATATAATATCCGACCTTTGCGCTGGTCTTATCGGTGGCCTTGGGC
TCACACCGTCCGGGAACATGGGCACTGCATGCATGCTGGCGGAGGCCGTC
CACGGTACCGCACCAGATATTGCTGGGAAGAATATGGCAAATCCTACGGC
TTTGCTCATGAGCGCTTTGATGATGTTGCGCCACATGGATCTTCGCACTG
AGGCCAATCTGATCGAGCAAAGCGTCCATAGTGTTCTAAGAGAAGGGTCC
GTACGGACGGGTGACATTGGTGGTTCGTCTTCCACTACCGCGTATACTGA
CGCCATCATTAAGCAGATGGATGAGAGAAGGGCTTTGAGCTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1207375..1208517-

>Gchil6798.t1 ID=Gchil6798.t1|Name=Gchil6798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00004416_pilon:1207375..1208517- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCGATACCTCCATAATAGTTCAGCAGCGTTATCTCGTTTCAGATC
TGCTTTTCATCGTTACTCCCCCTGCAGCTCAAACTGCGCTGCTGCTTTTT
CTACCTCTTCTGAATCTCGGCAATATACGGTCACTCTCTTCCCCGGTGAT
GGGATCGGCCCAGAGATCTCAGAGTCTGTCAAACGTATCTTCAGTGCAGC
TGATGTGCCCATCACATGGGAGACTCATGTCATCGATATACATTCCGCCA
AACCGGGTGAGGATCTAATCAGCAAGGCGGCACTTGATTCCGTTCGTCGA
AATGGGTTTGGGCTCAAAGGTCCAATGGCTACCCCCATCGGCAAGGGCCA
TAGAAGTCTCAATCTCACTCTTCGAAAGGAACTTGGCCTCTACGCCAATG
TTCGACCGTGTATTTCAATGCCAGGAGTTGACACCCTTTACAAAGATGTT
GACGTGGTCACTGTTCGGGAAAACACGGAAGGCGAGTACAGTGGACTGGA
GCACACAGTATATCCTGGCGTCGTAGAAAGTCTTAAAGTTATCACTCGAG
ACGCATCCATGCGCGTGTGTGAGTATGCCTTTGATTATGCTATTAAGAAT
AACCGTAAGAGAGTTACTGCTGTCCATAAGGCCTCTGTCATGAAGCTCTC
CGATGGTTTATTCCTTAAATGTGCGCGCGAAGTAGCAGAAAAACACAAAG
ACTCGGGGGTCGAATTCCAGACGCTTCTCATCGACAACGCCGCATCTCTA
CTTGTATCAAACCCATCCCTTCTGGACGTTATGGTCATGCCGAACCTCTA
TGGTGATATAATATCCGACCTTTGCGCTGGTCTTATCGGTGGCCTTGGGC
TCACACCGTCCGGGAACATGGGCACTGCATGCATGCTGGCGGAGGCCGTC
CACGGTACCGCACCAGATATTGCTGGGAAGAATATGGCAAATCCTACGGC
TTTGCTCATGAGCGCTTTGATGATGTTGCGCCACATGGATCTTCGCACTG
AGGCCAATCTGATCGAGCAAAGCGTCCATAGTGTTCTAAGAGAAGGGTCC
GTACGGACGGGTGACATTGGTGGTTCGTCTTCCACTACCGCGTATACTGA
CGCCATCATTAAGCAGATGGATGAGAGAAGGGCTTTGAGCTAA
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