Gchil6683.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6683.t1
Unique NameGchil6683.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:210461..210859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1301100.HG529418_gene3045
Preferred nameyaaA
PFAMsS4_2
Max annot lvl186801|Clostridia
KEGG koko:K14761
Evalue1.65e-13
EggNOG OGsCOG2501@1|root,COG2501@2|Bacteria,1VYQT@1239|Firmicutes,24QZU@186801|Clostridia,36MKH@31979|Clostridiaceae
DescriptionS4 domain protein
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6683Gchil6683Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 210461..210859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6683.t1.stop1Gchil6683.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 210461..210463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6683.t1.CDS1Gchil6683.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 210461..210859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6683.t1.exon1Gchil6683.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 210461..210859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6683.t1.start1Gchil6683.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 210857..210859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6683.t1Gchil6683.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 210461..210859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6683.t1 ID=Gchil6683.t1|Name=Gchil6683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=133bp
MLAASNNSAFVTAAALPFTSQKAAARCAQRRNAPTRSKRVRGGVRMRDRF
DNEGRQYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLR
QHDTVSVRGDQLALCVDFVPDGDGDGDHGRLG*
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spliced messenger RNA

>Gchil6683.t1 ID=Gchil6683.t1|Name=Gchil6683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00004416_pilon:210461..210859- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGCAGCGTCAAACAACAGCGCCTTCGTAACGGCGGCGGCGCTGCC
GTTCACTTCCCAAAAGGCTGCTGCGAGATGCGCGCAGCGCCGAAACGCGC
CCACACGCAGCAAGCGCGTGCGCGGAGGAGTACGCATGAGAGACCGATTC
GATAACGAAGGGCGTCAATACATCCGCTTGGAACAGTTCCTAAAGCTGCA
AGCCATGTGCTGCACGGGTGGCGAGGCAAAGGTCATGATCGCCAAGGGCC
TAGTCCTCGTCAACGGGCATGTGGAGCATCGACGCGGCCGCAAGCTGAGG
CAACACGATACGGTATCGGTGCGTGGGGACCAGCTGGCGCTGTGCGTTGA
CTTCGTGCCCGACGGCGATGGCGATGGCGACCATGGGCGCCTTGGCTAG
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protein sequence of Gchil6683.t1

>Gchil6683.t1 ID=Gchil6683.t1|Name=Gchil6683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=133bp
MLAASNNSAFVTAAALPFTSQKAAARCAQRRNAPTRSKRVRGGVRMRDRF
DNEGRQYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLR
QHDTVSVRGDQLALCVDFVPDGDGDGDHGRLG*
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mRNA from alignment at tig00004416_pilon:210461..210859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6683.t1 ID=Gchil6683.t1|Name=Gchil6683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00004416_pilon:210461..210859- (Gracilaria chilensis NLEC103_M9 male)
ATGCTAGCAGCGTCAAACAACAGCGCCTTCGTAACGGCGGCGGCGCTGCC
GTTCACTTCCCAAAAGGCTGCTGCGAGATGCGCGCAGCGCCGAAACGCGC
CCACACGCAGCAAGCGCGTGCGCGGAGGAGTACGCATGAGAGACCGATTC
GATAACGAAGGGCGTCAATACATCCGCTTGGAACAGTTCCTAAAGCTGCA
AGCCATGTGCTGCACGGGTGGCGAGGCAAAGGTCATGATCGCCAAGGGCC
TAGTCCTCGTCAACGGGCATGTGGAGCATCGACGCGGCCGCAAGCTGAGG
CAACACGATACGGTATCGGTGCGTGGGGACCAGCTGGCGCTGTGCGTTGA
CTTCGTGCCCGACGGCGATGGCGATGGCGACCATGGGCGCCTTGGCTAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:210461..210859-

>Gchil6683.t1 ID=Gchil6683.t1|Name=Gchil6683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00004416_pilon:210461..210859- (Gracilaria chilensis NLEC103_M9 male)
ATGCTAGCAGCGTCAAACAACAGCGCCTTCGTAACGGCGGCGGCGCTGCC
GTTCACTTCCCAAAAGGCTGCTGCGAGATGCGCGCAGCGCCGAAACGCGC
CCACACGCAGCAAGCGCGTGCGCGGAGGAGTACGCATGAGAGACCGATTC
GATAACGAAGGGCGTCAATACATCCGCTTGGAACAGTTCCTAAAGCTGCA
AGCCATGTGCTGCACGGGTGGCGAGGCAAAGGTCATGATCGCCAAGGGCC
TAGTCCTCGTCAACGGGCATGTGGAGCATCGACGCGGCCGCAAGCTGAGG
CAACACGATACGGTATCGGTGCGTGGGGACCAGCTGGCGCTGTGCGTTGA
CTTCGTGCCCGACGGCGATGGCGATGGCGACCATGGGCGCCTTGGCTAG
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