Gchil6683.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6683.t1
Unique NameGchil6683.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length133
Homology
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A2V3ILX2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILX2_9FLOR)

HSP 1 Score: 95.1 bits (235), Expect = 1.990e-22
Identity = 61/129 (47.29%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    1 MLAASNNSAFVTAAALPFTSQKAAARCAQRRNA-------PTRSKRV----RGGVRMRDRFDNEGRQYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLALCVDF 118
            M+ ++ + AFV    L + SQ    RC  R          P   KR     R  V MRD+ D  GR+YIRLEQF+KLQ M  TGG+AK++I +GLV VNG  E RRGRKL Q D V V GD + L VDF
Sbjct:    1 MIKSNRSEAFVRPLKLSWKSQHRTRRCTCRPREQHVLTAFPNAGKRSAVSGRSPVFMRDQLDKHGRRYIRLEQFIKLQGMAETGGQAKMLIHEGLVFVNGQTEVRRGRKLVQDDGVRVEGDDMELMVDF 129          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A3A0AVZ5_9CHLR (RNA-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AVZ5_9CHLR)

HSP 1 Score: 68.9 bits (167), Expect = 5.030e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   58 IRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLALCVD 117
            I+L+QFLKL  +  TGGEAK++I  G V+VNG VE RRGRKLR  D V V G++L +  D
Sbjct:    5 IKLDQFLKLAQVVQTGGEAKILIQSGQVIVNGQVETRRGRKLRPGDVVVVDGEELVVATD 64          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A845CJ50_9CHLR (RNA-binding S4 domain-containing protein n=3 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A845CJ50_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 8.940e-13
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   58 IRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLALCVDFV 119
            IRL+QFLK+Q +C TGG AK ++ +GLV VNG VE RRG KLRQ D VS  G    + VDFV
Sbjct:   20 IRLDQFLKVQRLCATGGLAKAVVQRGLVEVNGKVELRRGCKLRQGDVVSYDG--YTVPVDFV 79          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A1V6A8E1_9FIRM (Ribosome-associated protein n=1 Tax=Firmicutes bacterium ADurb.Bin153 TaxID=1852883 RepID=A0A1V6A8E1_9FIRM)

HSP 1 Score: 65.1 bits (157), Expect = 1.830e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   56 QYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLAL 114
            +YI L+Q LK   +  TGGE K+ IA GLV VNG  E RRGRKLR+ DTVS  G ++A+
Sbjct:   11 EYITLDQLLKWAGLVMTGGEGKLAIADGLVKVNGQTETRRGRKLREGDTVSFGGREVAV 69          
BLAST of Gchil6683.t1 vs. uniprot
Match: UPI00068F2CF7 (RNA-binding S4 domain-containing protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00068F2CF7)

HSP 1 Score: 64.7 bits (156), Expect = 2.780e-11
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0
Query:   53 EGRQYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRG 109
            + + +I+L+QFLK QA+  TGGEAK+MI +G V VNG VE RRG+KLR  D V++ G
Sbjct:   12 QSQPHIKLDQFLKWQAITMTGGEAKIMIQQGEVEVNGEVETRRGKKLRTGDRVTIGG 68          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A2T2R6V4_9CYAN (RNA-binding protein n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2R6V4_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 2.910e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0
Query:   58 IRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLALCVDFV 119
            I+L+QFLK Q +  TGGEAK+MI  GLVLVN  VE RRGRKL   D V+V G  +   V+F 
Sbjct:    5 IKLDQFLKFQDLAQTGGEAKIMIWDGLVLVNDEVETRRGRKLVHGDRVTVEG--ITYLVEFA 64          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A428Y3L4_9ACTN (RNA-binding protein n=4 Tax=Actinoplanes TaxID=1865 RepID=A0A428Y3L4_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 4.330e-11
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0
Query:   58 IRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRG 109
            IRL QFLKL  +  TGGE K++IA G V VNG V+ RRGR+LRQ D V+VRG
Sbjct:   11 IRLGQFLKLADLIDTGGEGKILIASGDVTVNGEVDTRRGRQLRQGDVVAVRG 62          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A651DUZ3_9CYAN (RNA-binding S4 domain-containing protein n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A651DUZ3_9CYAN)

HSP 1 Score: 63.9 bits (154), Expect = 4.330e-11
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   58 IRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLALCVD 117
            I+L+QFLKL     TGG+AK+MI  G VLVNG +E RRGRKL   D V V G++  + VD
Sbjct:    9 IKLDQFLKLTGTARTGGQAKLMIQDGRVLVNGTIETRRGRKLVGGDRVVVEGEEFVVVVD 68          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A6P0ZGX1_9CYAN (RNA-binding S4 domain-containing protein n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZGX1_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 7.650e-11
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0
Query:   58 IRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRG 109
            I+L+QFLK   +  TGG+AK+MI  G V VNG VE RRGRKL  HDTV+V G
Sbjct:    2 IKLDQFLKFVGIAPTGGQAKIMITNGEVKVNGVVETRRGRKLSDHDTVTVIG 53          
BLAST of Gchil6683.t1 vs. uniprot
Match: A0A1L3GLH3_9DELT (RNA-binding protein n=1 Tax=Syntrophotalea acetylenivorans TaxID=1842532 RepID=A0A1L3GLH3_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 8.870e-11
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   48 DRFDNEGRQYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLRQHDTVSVRGDQLAL 114
            + FD +GR+++ L   +KL  MC +GG AK+MIA+GLV+V+G VE R+  K+RQ   V   G ++ +
Sbjct:    2 EEFDLQGREFVELNNLMKLTGMCPSGGTAKLMIAEGLVIVDGQVELRKRCKIRQGQVVEYEGRKVTI 68          
The following BLAST results are available for this feature:
BLAST of Gchil6683.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILX2_9FLOR1.990e-2247.29Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A3A0AVZ5_9CHLR5.030e-1356.67RNA-binding protein n=1 Tax=Chloroflexi bacterium ... [more]
A0A845CJ50_9CHLR8.940e-1359.68RNA-binding S4 domain-containing protein n=3 Tax=u... [more]
A0A1V6A8E1_9FIRM1.830e-1155.93Ribosome-associated protein n=1 Tax=Firmicutes bac... [more]
UPI00068F2CF72.780e-1156.14RNA-binding S4 domain-containing protein n=1 Tax=M... [more]
A0A2T2R6V4_9CYAN2.910e-1156.45RNA-binding protein n=1 Tax=Cyanobacteria bacteriu... [more]
A0A428Y3L4_9ACTN4.330e-1163.46RNA-binding protein n=4 Tax=Actinoplanes TaxID=186... [more]
A0A651DUZ3_9CYAN4.330e-1155.00RNA-binding S4 domain-containing protein n=2 Tax=u... [more]
A0A6P0ZGX1_9CYAN7.650e-1161.54RNA-binding S4 domain-containing protein n=2 Tax=u... [more]
A0A1L3GLH3_9DELT8.870e-1143.28RNA-binding protein n=1 Tax=Syntrophotalea acetyle... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 44..115
e-value: 3.8E-21
score: 76.6
NoneNo IPR availablePFAMPF13275S4_2coord: 56..112
e-value: 5.6E-22
score: 77.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..132
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePROSITEPS50889S4coord: 58..121
score: 11.439977
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 53..110
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 58..118
e-value: 1.78742E-7
score: 43.3922

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:210461..210859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6683.t1Gchil6683.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 210461..210859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6683.t1 ID=Gchil6683.t1|Name=Gchil6683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=133bp
MLAASNNSAFVTAAALPFTSQKAAARCAQRRNAPTRSKRVRGGVRMRDRF
DNEGRQYIRLEQFLKLQAMCCTGGEAKVMIAKGLVLVNGHVEHRRGRKLR
QHDTVSVRGDQLALCVDFVPDGDGDGDHGRLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd