Gchil6815.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6815.t1
Unique NameGchil6815.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1347188..1347976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6815Gchil6815Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1347188..1347976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6815.t1Gchil6815.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1347188..1347976 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6815.t1.start1Gchil6815.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1347188..1347190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6815.t1.CDS1Gchil6815.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1347188..1347315 +
Gchil6815.t1.CDS2Gchil6815.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1347385..1347976 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6815.t1.exon1Gchil6815.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1347188..1347315 +
Gchil6815.t1.exon2Gchil6815.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1347385..1347976 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6815.t1.intron1Gchil6815.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1347316..1347384 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6815.t1.stop1Gchil6815.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1347974..1347976 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6815.t1 ID=Gchil6815.t1|Name=Gchil6815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp
MKESKTHEPGNYSASTAQDDVPDLNPNEMQDVVEVIGAWRIKDTIEEEVE
SVGDQNPGVAYPAVVLVDVVVKNVSSGVLDVVFDDPTEGWVANGDRSPYK
TVDVSMSLREIAPGAERTICLTAAVISPGRYNMCRFTMLNQTSSFVPNRR
RQPIAVRPSFMTVEVVENHNFYQEDLLEEQTEIAPLRRSSTRMSVVLDGR
STRQMSTRIEDKTGLETRKSDKEVRAHAVVVNEGDDNVK*
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spliced messenger RNA

>Gchil6815.t1 ID=Gchil6815.t1|Name=Gchil6815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004416_pilon:1347188..1347976+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAGAGCAAGACACATGAACCTGGAAACTACAGTGCGTCAACGGC
ACAGGACGACGTACCCGATTTGAATCCAAACGAAATGCAAGACGTCGTTG
AAGTCATTGGCGCGTGGCGGATCAAGGACACCATTGAGGAAGAAGTTGAA
TCCGTGGGTGACCAGAACCCGGGGGTCGCGTACCCTGCTGTTGTCCTTGT
TGATGTGGTCGTCAAAAATGTTTCTAGCGGAGTCCTGGACGTTGTGTTTG
ATGATCCTACGGAGGGTTGGGTGGCTAACGGGGATCGTAGTCCGTACAAA
ACGGTTGATGTTTCGATGTCCTTGAGAGAAATTGCTCCGGGGGCAGAACG
CACAATATGCTTGACGGCAGCGGTGATCAGCCCGGGTCGATATAATATGT
GTAGGTTTACCATGCTTAACCAGACAAGCAGCTTTGTTCCGAACAGAAGA
AGGCAACCAATTGCTGTCAGACCATCGTTTATGACCGTCGAGGTGGTTGA
AAATCATAATTTCTACCAGGAGGATCTCCTAGAAGAGCAAACAGAGATTG
CTCCGCTTCGACGCAGCTCAACAAGGATGAGTGTTGTGTTAGACGGAAGG
TCAACAAGACAGATGAGTACCCGGATAGAAGACAAAACTGGTTTGGAAAC
AAGGAAATCTGACAAGGAAGTGAGGGCCCACGCAGTGGTTGTAAATGAAG
GAGATGACAACGTTAAATAA
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protein sequence of Gchil6815.t1

>Gchil6815.t1 ID=Gchil6815.t1|Name=Gchil6815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=240bp
MKESKTHEPGNYSASTAQDDVPDLNPNEMQDVVEVIGAWRIKDTIEEEVE
SVGDQNPGVAYPAVVLVDVVVKNVSSGVLDVVFDDPTEGWVANGDRSPYK
TVDVSMSLREIAPGAERTICLTAAVISPGRYNMCRFTMLNQTSSFVPNRR
RQPIAVRPSFMTVEVVENHNFYQEDLLEEQTEIAPLRRSSTRMSVVLDGR
STRQMSTRIEDKTGLETRKSDKEVRAHAVVVNEGDDNVK*
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mRNA from alignment at tig00004416_pilon:1347188..1347976+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6815.t1 ID=Gchil6815.t1|Name=Gchil6815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004416_pilon:1347188..1347976+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAGAGCAAGACACATGAACCTGGAAACTACAGTGCGTCAACGGC
ACAGGACGACGTACCCGATTTGAATCCAAACGAAATGCAAGACGTCGTTG
AAGTCATTGGCGCGTGGCGGATCAAGGAGTACGGAAATGATTTTGTGCAA
GTGCGCCTGTCTCATCCCCTAAAAGTTGAACATGATTTCTTTTGAAGCAC
CATTGAGGAAGAAGTTGAATCCGTGGGTGACCAGAACCCGGGGGTCGCGT
ACCCTGCTGTTGTCCTTGTTGATGTGGTCGTCAAAAATGTTTCTAGCGGA
GTCCTGGACGTTGTGTTTGATGATCCTACGGAGGGTTGGGTGGCTAACGG
GGATCGTAGTCCGTACAAAACGGTTGATGTTTCGATGTCCTTGAGAGAAA
TTGCTCCGGGGGCAGAACGCACAATATGCTTGACGGCAGCGGTGATCAGC
CCGGGTCGATATAATATGTGTAGGTTTACCATGCTTAACCAGACAAGCAG
CTTTGTTCCGAACAGAAGAAGGCAACCAATTGCTGTCAGACCATCGTTTA
TGACCGTCGAGGTGGTTGAAAATCATAATTTCTACCAGGAGGATCTCCTA
GAAGAGCAAACAGAGATTGCTCCGCTTCGACGCAGCTCAACAAGGATGAG
TGTTGTGTTAGACGGAAGGTCAACAAGACAGATGAGTACCCGGATAGAAG
ACAAAACTGGTTTGGAAACAAGGAAATCTGACAAGGAAGTGAGGGCCCAC
GCAGTGGTTGTAAATGAAGGAGATGACAACGTTAAATAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1347188..1347976+

>Gchil6815.t1 ID=Gchil6815.t1|Name=Gchil6815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00004416_pilon:1347188..1347976+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAGAGCAAGACACATGAACCTGGAAACTACAGTGCGTCAACGGC
ACAGGACGACGTACCCGATTTGAATCCAAACGAAATGCAAGACGTCGTTG
AAGTCATTGGCGCGTGGCGGATCAAGGACACCATTGAGGAAGAAGTTGAA
TCCGTGGGTGACCAGAACCCGGGGGTCGCGTACCCTGCTGTTGTCCTTGT
TGATGTGGTCGTCAAAAATGTTTCTAGCGGAGTCCTGGACGTTGTGTTTG
ATGATCCTACGGAGGGTTGGGTGGCTAACGGGGATCGTAGTCCGTACAAA
ACGGTTGATGTTTCGATGTCCTTGAGAGAAATTGCTCCGGGGGCAGAACG
CACAATATGCTTGACGGCAGCGGTGATCAGCCCGGGTCGATATAATATGT
GTAGGTTTACCATGCTTAACCAGACAAGCAGCTTTGTTCCGAACAGAAGA
AGGCAACCAATTGCTGTCAGACCATCGTTTATGACCGTCGAGGTGGTTGA
AAATCATAATTTCTACCAGGAGGATCTCCTAGAAGAGCAAACAGAGATTG
CTCCGCTTCGACGCAGCTCAACAAGGATGAGTGTTGTGTTAGACGGAAGG
TCAACAAGACAGATGAGTACCCGGATAGAAGACAAAACTGGTTTGGAAAC
AAGGAAATCTGACAAGGAAGTGAGGGCCCACGCAGTGGTTGTAAATGAAG
GAGATGACAACGTTAAATAA
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