Gchil6687.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6687.t1
Unique Name	Gchil6687.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	642

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:279170..281095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702898.1
Preferred name	DPH6
PFAMs	Diphthami_syn_2,Ribonuc_L-PSP
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00296,RC00358,RC01015,RC03275,RC03354
KEGG ko	ko:K06927,ko:K09022,ko:K13761,ko:K15067,ko:K19783
KEGG Reaction	R01234,R03613,R03887,R11098,R11099
KEGG Pathway	ko00230,ko00380,map00230,map00380
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016874,GO:0016879,GO:0016880,GO:0017178,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765
Evalue	5.07e-94
EggNOG OGs	COG0251@1\|root,COG2102@1\|root,KOG2316@2759\|Eukaryota,KOG2317@2759\|Eukaryota
EC	3.1.4.35,3.5.99.10,3.5.99.5,3.6.4.12,6.3.1.14
Description	endoribonuclease L-PSP
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03012,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6687	Gchil6687	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 279170..281095 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6687.t1.start1	Gchil6687.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 279170..279172 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6687.t1.CDS1	Gchil6687.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 279170..281095 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6687.t1.exon1	Gchil6687.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 279170..281095 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6687.t1.stop1	Gchil6687.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 281093..281095 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6687.t1	Gchil6687.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 279170..281095 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:279170..281095+
coding sequence from alignment at tig00004416_pilon:279170..281095+

mRNA sequence

>Gchil6687.t1 ID=Gchil6687.t1|Name=Gchil6687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp
MHGHQVIALAHITPTKEEADSYMYQSVGSNAVPFIATALGLPLFTRATRA
HAKQQKLFYTPTDHDEVEDLVALLQTVKRECPQVQAVCSGALWSDYQRLR
VESAASRVNLLSLSYLWRRNQRELLDEMIDAGIDAVMIKVAGIGLKPMHV
GKTLKEMRPTLHQLEEKYGSYVCGEGGEFESLVLWMPGFQKRLVLEDTEI
VLHSDDPYAPVWYLRIHSCRLGELTEDHIQTNPPRSLIAPKVFHPSMNWT
DKIQQCDANTAASESGKFRDDQLLLQVSVGCGDNYLFVSIQAPEDGRKGV
AEAANQLKLVLENHEESLASVIYVTLSLRSVAGSRYKEANAGYNEVFAVP
ECTPPPSRACVAVSPENHATTIEALVRRKRNRNAPGAFTLHVQSLSEWAP
PCIGPYAQIVEEDGVVHVSGILPLYAPTATVPDNFAGRAQVAACVYNLSR
TLEASHSSVRKMGLFVAYTTKDCLIQHVHEELKAELGKCGKEDPVILVLP
ISDLPKGALVEVRAVGVVNETDLQIPENERDIEGIEYCSFQKVVCGMFGY
TVFAGQQEGCIDDFEITLASLLNDSFEKHGKLLSVQLYYSKAFCARDLRE
LLRKYAPEAALTMMKCRAACSDSSIRSIAVYDLSRYEKEVS*

spliced messenger RNA

>Gchil6687.t1 ID=Gchil6687.t1|Name=Gchil6687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00004416_pilon:279170..281095+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGGCCATCAAGTGATCGCACTTGCTCATATCACCCCCACGAAGGA
AGAGGCTGACTCTTACATGTATCAATCCGTTGGTTCAAACGCTGTCCCTT
TCATAGCTACGGCTCTGGGATTGCCGCTTTTTACGAGAGCGACACGAGCG
CACGCCAAACAGCAGAAGTTGTTTTATACCCCAACTGATCATGATGAAGT
TGAAGATCTCGTAGCTCTGCTGCAGACTGTGAAAAGAGAATGTCCTCAAG
TTCAGGCTGTTTGCTCCGGCGCATTATGGTCCGATTACCAGCGCCTGCGT
GTAGAGAGCGCCGCGTCACGGGTGAATCTCCTTTCCTTATCGTATCTTTG
GCGTCGAAATCAACGAGAATTGTTAGATGAAATGATCGATGCTGGAATTG
ACGCTGTGATGATCAAAGTGGCTGGTATCGGATTGAAACCGATGCATGTT
GGGAAAACTTTAAAAGAAATGCGTCCCACCCTGCACCAACTAGAAGAAAA
GTACGGATCGTACGTGTGTGGCGAAGGCGGCGAATTTGAATCTCTTGTTT
TGTGGATGCCCGGCTTTCAAAAACGACTCGTTTTGGAAGATACAGAGATC
GTCCTCCATTCTGATGATCCTTATGCCCCGGTATGGTATCTTAGAATTCA
TTCATGCCGTCTTGGTGAACTCACAGAAGACCATATTCAAACGAACCCTC
CTCGGTCTCTAATTGCACCAAAAGTGTTCCATCCCTCGATGAACTGGACT
GATAAAATTCAGCAATGTGATGCCAACACGGCAGCCTCTGAAAGTGGAAA
ATTCCGAGACGACCAACTACTTCTACAGGTGAGCGTTGGATGCGGTGATA
ATTACCTCTTTGTCTCAATACAAGCTCCGGAAGACGGGAGGAAAGGAGTG
GCCGAAGCGGCAAATCAACTCAAACTTGTCTTGGAGAACCATGAAGAATC
TTTGGCTAGCGTAATTTATGTGACGTTGTCACTGAGATCGGTAGCAGGGT
CGAGATACAAGGAAGCGAATGCTGGGTACAACGAGGTTTTCGCTGTTCCC
GAATGTACCCCTCCTCCTTCGCGAGCATGTGTCGCGGTATCACCCGAAAA
TCATGCAACGACAATAGAAGCGCTAGTGCGAAGAAAACGCAATCGAAACG
CCCCAGGCGCATTCACGCTACATGTACAATCTCTGTCGGAATGGGCGCCA
CCTTGCATTGGGCCCTATGCGCAGATTGTGGAAGAAGACGGAGTTGTGCA
TGTTAGCGGCATCTTGCCGCTTTACGCCCCAACTGCGACTGTTCCAGACA
ATTTCGCTGGACGGGCCCAAGTTGCGGCGTGTGTATATAATCTTTCCAGG
ACATTGGAGGCGAGCCACAGCAGTGTGCGGAAGATGGGGTTATTTGTTGC
GTACACGACTAAAGACTGTCTCATACAACACGTGCATGAGGAACTCAAGG
CGGAGCTTGGAAAGTGCGGGAAAGAAGACCCAGTAATTCTAGTACTACCA
ATTTCAGATTTACCAAAAGGTGCCCTTGTCGAGGTTCGAGCCGTTGGCGT
GGTGAACGAGACTGATTTACAAATTCCCGAGAACGAACGAGACATCGAGG
GTATTGAATACTGTTCGTTTCAGAAGGTAGTTTGCGGGATGTTTGGGTAC
ACCGTTTTCGCCGGACAGCAGGAAGGCTGCATTGATGATTTTGAAATAAC
TTTGGCTTCGTTACTGAACGATTCATTTGAAAAGCACGGGAAGCTACTTT
CGGTTCAGCTTTACTACAGCAAGGCATTCTGCGCACGAGATCTGCGCGAG
CTCTTGCGGAAGTATGCCCCTGAAGCGGCCTTGACAATGATGAAATGCCG
TGCAGCCTGCAGCGACTCATCGATAAGAAGCATAGCCGTATATGATTTAT
CGCGATATGAGAAAGAGGTGTCGTGA

protein sequence of Gchil6687.t1

>Gchil6687.t1 ID=Gchil6687.t1|Name=Gchil6687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=642bp
MHGHQVIALAHITPTKEEADSYMYQSVGSNAVPFIATALGLPLFTRATRA
HAKQQKLFYTPTDHDEVEDLVALLQTVKRECPQVQAVCSGALWSDYQRLR
VESAASRVNLLSLSYLWRRNQRELLDEMIDAGIDAVMIKVAGIGLKPMHV
GKTLKEMRPTLHQLEEKYGSYVCGEGGEFESLVLWMPGFQKRLVLEDTEI
VLHSDDPYAPVWYLRIHSCRLGELTEDHIQTNPPRSLIAPKVFHPSMNWT
DKIQQCDANTAASESGKFRDDQLLLQVSVGCGDNYLFVSIQAPEDGRKGV
AEAANQLKLVLENHEESLASVIYVTLSLRSVAGSRYKEANAGYNEVFAVP
ECTPPPSRACVAVSPENHATTIEALVRRKRNRNAPGAFTLHVQSLSEWAP
PCIGPYAQIVEEDGVVHVSGILPLYAPTATVPDNFAGRAQVAACVYNLSR
TLEASHSSVRKMGLFVAYTTKDCLIQHVHEELKAELGKCGKEDPVILVLP
ISDLPKGALVEVRAVGVVNETDLQIPENERDIEGIEYCSFQKVVCGMFGY
TVFAGQQEGCIDDFEITLASLLNDSFEKHGKLLSVQLYYSKAFCARDLRE
LLRKYAPEAALTMMKCRAACSDSSIRSIAVYDLSRYEKEVS*

mRNA from alignment at tig00004416_pilon:279170..281095+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6687.t1 ID=Gchil6687.t1|Name=Gchil6687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00004416_pilon:279170..281095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATGGCCATCAAGTGATCGCACTTGCTCATATCACCCCCACGAAGGA
AGAGGCTGACTCTTACATGTATCAATCCGTTGGTTCAAACGCTGTCCCTT
TCATAGCTACGGCTCTGGGATTGCCGCTTTTTACGAGAGCGACACGAGCG
CACGCCAAACAGCAGAAGTTGTTTTATACCCCAACTGATCATGATGAAGT
TGAAGATCTCGTAGCTCTGCTGCAGACTGTGAAAAGAGAATGTCCTCAAG
TTCAGGCTGTTTGCTCCGGCGCATTATGGTCCGATTACCAGCGCCTGCGT
GTAGAGAGCGCCGCGTCACGGGTGAATCTCCTTTCCTTATCGTATCTTTG
GCGTCGAAATCAACGAGAATTGTTAGATGAAATGATCGATGCTGGAATTG
ACGCTGTGATGATCAAAGTGGCTGGTATCGGATTGAAACCGATGCATGTT
GGGAAAACTTTAAAAGAAATGCGTCCCACCCTGCACCAACTAGAAGAAAA
GTACGGATCGTACGTGTGTGGCGAAGGCGGCGAATTTGAATCTCTTGTTT
TGTGGATGCCCGGCTTTCAAAAACGACTCGTTTTGGAAGATACAGAGATC
GTCCTCCATTCTGATGATCCTTATGCCCCGGTATGGTATCTTAGAATTCA
TTCATGCCGTCTTGGTGAACTCACAGAAGACCATATTCAAACGAACCCTC
CTCGGTCTCTAATTGCACCAAAAGTGTTCCATCCCTCGATGAACTGGACT
GATAAAATTCAGCAATGTGATGCCAACACGGCAGCCTCTGAAAGTGGAAA
ATTCCGAGACGACCAACTACTTCTACAGGTGAGCGTTGGATGCGGTGATA
ATTACCTCTTTGTCTCAATACAAGCTCCGGAAGACGGGAGGAAAGGAGTG
GCCGAAGCGGCAAATCAACTCAAACTTGTCTTGGAGAACCATGAAGAATC
TTTGGCTAGCGTAATTTATGTGACGTTGTCACTGAGATCGGTAGCAGGGT
CGAGATACAAGGAAGCGAATGCTGGGTACAACGAGGTTTTCGCTGTTCCC
GAATGTACCCCTCCTCCTTCGCGAGCATGTGTCGCGGTATCACCCGAAAA
TCATGCAACGACAATAGAAGCGCTAGTGCGAAGAAAACGCAATCGAAACG
CCCCAGGCGCATTCACGCTACATGTACAATCTCTGTCGGAATGGGCGCCA
CCTTGCATTGGGCCCTATGCGCAGATTGTGGAAGAAGACGGAGTTGTGCA
TGTTAGCGGCATCTTGCCGCTTTACGCCCCAACTGCGACTGTTCCAGACA
ATTTCGCTGGACGGGCCCAAGTTGCGGCGTGTGTATATAATCTTTCCAGG
ACATTGGAGGCGAGCCACAGCAGTGTGCGGAAGATGGGGTTATTTGTTGC
GTACACGACTAAAGACTGTCTCATACAACACGTGCATGAGGAACTCAAGG
CGGAGCTTGGAAAGTGCGGGAAAGAAGACCCAGTAATTCTAGTACTACCA
ATTTCAGATTTACCAAAAGGTGCCCTTGTCGAGGTTCGAGCCGTTGGCGT
GGTGAACGAGACTGATTTACAAATTCCCGAGAACGAACGAGACATCGAGG
GTATTGAATACTGTTCGTTTCAGAAGGTAGTTTGCGGGATGTTTGGGTAC
ACCGTTTTCGCCGGACAGCAGGAAGGCTGCATTGATGATTTTGAAATAAC
TTTGGCTTCGTTACTGAACGATTCATTTGAAAAGCACGGGAAGCTACTTT
CGGTTCAGCTTTACTACAGCAAGGCATTCTGCGCACGAGATCTGCGCGAG
CTCTTGCGGAAGTATGCCCCTGAAGCGGCCTTGACAATGATGAAATGCCG
TGCAGCCTGCAGCGACTCATCGATAAGAAGCATAGCCGTATATGATTTAT
CGCGATATGAGAAAGAGGTGTCGTGA

Coding sequence (CDS) from alignment at tig00004416_pilon:279170..281095+

>Gchil6687.t1 ID=Gchil6687.t1|Name=Gchil6687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1926bp|location=Sequence derived from alignment at tig00004416_pilon:279170..281095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATGGCCATCAAGTGATCGCACTTGCTCATATCACCCCCACGAAGGA
AGAGGCTGACTCTTACATGTATCAATCCGTTGGTTCAAACGCTGTCCCTT
TCATAGCTACGGCTCTGGGATTGCCGCTTTTTACGAGAGCGACACGAGCG
CACGCCAAACAGCAGAAGTTGTTTTATACCCCAACTGATCATGATGAAGT
TGAAGATCTCGTAGCTCTGCTGCAGACTGTGAAAAGAGAATGTCCTCAAG
TTCAGGCTGTTTGCTCCGGCGCATTATGGTCCGATTACCAGCGCCTGCGT
GTAGAGAGCGCCGCGTCACGGGTGAATCTCCTTTCCTTATCGTATCTTTG
GCGTCGAAATCAACGAGAATTGTTAGATGAAATGATCGATGCTGGAATTG
ACGCTGTGATGATCAAAGTGGCTGGTATCGGATTGAAACCGATGCATGTT
GGGAAAACTTTAAAAGAAATGCGTCCCACCCTGCACCAACTAGAAGAAAA
GTACGGATCGTACGTGTGTGGCGAAGGCGGCGAATTTGAATCTCTTGTTT
TGTGGATGCCCGGCTTTCAAAAACGACTCGTTTTGGAAGATACAGAGATC
GTCCTCCATTCTGATGATCCTTATGCCCCGGTATGGTATCTTAGAATTCA
TTCATGCCGTCTTGGTGAACTCACAGAAGACCATATTCAAACGAACCCTC
CTCGGTCTCTAATTGCACCAAAAGTGTTCCATCCCTCGATGAACTGGACT
GATAAAATTCAGCAATGTGATGCCAACACGGCAGCCTCTGAAAGTGGAAA
ATTCCGAGACGACCAACTACTTCTACAGGTGAGCGTTGGATGCGGTGATA
ATTACCTCTTTGTCTCAATACAAGCTCCGGAAGACGGGAGGAAAGGAGTG
GCCGAAGCGGCAAATCAACTCAAACTTGTCTTGGAGAACCATGAAGAATC
TTTGGCTAGCGTAATTTATGTGACGTTGTCACTGAGATCGGTAGCAGGGT
CGAGATACAAGGAAGCGAATGCTGGGTACAACGAGGTTTTCGCTGTTCCC
GAATGTACCCCTCCTCCTTCGCGAGCATGTGTCGCGGTATCACCCGAAAA
TCATGCAACGACAATAGAAGCGCTAGTGCGAAGAAAACGCAATCGAAACG
CCCCAGGCGCATTCACGCTACATGTACAATCTCTGTCGGAATGGGCGCCA
CCTTGCATTGGGCCCTATGCGCAGATTGTGGAAGAAGACGGAGTTGTGCA
TGTTAGCGGCATCTTGCCGCTTTACGCCCCAACTGCGACTGTTCCAGACA
ATTTCGCTGGACGGGCCCAAGTTGCGGCGTGTGTATATAATCTTTCCAGG
ACATTGGAGGCGAGCCACAGCAGTGTGCGGAAGATGGGGTTATTTGTTGC
GTACACGACTAAAGACTGTCTCATACAACACGTGCATGAGGAACTCAAGG
CGGAGCTTGGAAAGTGCGGGAAAGAAGACCCAGTAATTCTAGTACTACCA
ATTTCAGATTTACCAAAAGGTGCCCTTGTCGAGGTTCGAGCCGTTGGCGT
GGTGAACGAGACTGATTTACAAATTCCCGAGAACGAACGAGACATCGAGG
GTATTGAATACTGTTCGTTTCAGAAGGTAGTTTGCGGGATGTTTGGGTAC
ACCGTTTTCGCCGGACAGCAGGAAGGCTGCATTGATGATTTTGAAATAAC
TTTGGCTTCGTTACTGAACGATTCATTTGAAAAGCACGGGAAGCTACTTT
CGGTTCAGCTTTACTACAGCAAGGCATTCTGCGCACGAGATCTGCGCGAG
CTCTTGCGGAAGTATGCCCCTGAAGCGGCCTTGACAATGATGAAATGCCG
TGCAGCCTGCAGCGACTCATCGATAAGAAGCATAGCCGTATATGATTTAT
CGCGATATGAGAAAGAGGTGTCGTGA